Wall clock time and date at job start Tue Mar 31 2020 05:22:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.47315 * 2 1 4 4 C 1.53005 * 109.46715 * 240.00258 * 2 1 3 5 5 C 1.53003 * 109.46696 * 175.00077 * 4 2 1 6 6 C 1.53005 * 109.46696 * 179.97438 * 5 4 2 7 7 N 1.46505 * 109.46904 * 180.02562 * 6 5 4 8 8 C 1.36931 * 119.99788 * 180.02562 * 7 6 5 9 9 H 1.08002 * 120.00438 * 0.02562 * 8 7 6 10 10 C 1.38817 * 119.99680 * 179.72358 * 8 7 6 11 11 N 1.31617 * 119.99873 * 180.27450 * 10 8 7 12 12 Si 1.86800 * 120.00209 * 0.27770 * 10 8 7 13 13 H 1.48498 * 109.47118 * 89.99559 * 12 10 8 14 14 H 1.48499 * 109.47134 * 210.00079 * 12 10 8 15 15 H 1.48507 * 109.46904 * 329.99901 * 12 10 8 16 16 N 1.46496 * 109.47201 * 120.00556 * 2 1 3 17 17 C 1.34780 * 120.00143 * 274.99940 * 16 2 1 18 18 O 1.21285 * 119.99300 * 359.97438 * 17 16 2 19 19 C 1.50695 * 120.00107 * 179.97438 * 17 16 2 20 20 H 1.09003 * 110.28595 * 37.88334 * 19 17 16 21 21 C 1.54163 * 110.31849 * 275.65787 * 19 17 16 22 22 C 1.53883 * 108.70405 * 213.19147 * 21 19 17 23 23 C 1.55042 * 106.62237 * 47.18352 * 22 21 19 24 24 S 1.82926 * 110.31725 * 159.99920 * 19 17 16 25 25 O 1.42102 * 109.34997 * 234.42387 * 24 19 17 26 26 O 1.42094 * 109.35357 * 7.49054 * 24 19 17 27 27 H 1.08993 * 109.47315 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46761 * 299.99542 * 1 2 3 29 29 H 1.08993 * 109.47012 * 59.99372 * 1 2 3 30 30 H 1.08995 * 109.47418 * 55.00423 * 4 2 1 31 31 H 1.09001 * 109.47199 * 294.99964 * 4 2 1 32 32 H 1.09003 * 109.47221 * 60.00555 * 5 4 2 33 33 H 1.08993 * 109.47355 * 300.00167 * 5 4 2 34 34 H 1.09003 * 109.46946 * 60.00823 * 6 5 4 35 35 H 1.08993 * 109.47679 * 300.00366 * 6 5 4 36 36 H 0.97000 * 119.99792 * 0.02562 * 7 6 5 37 37 H 0.97000 * 120.00553 * 180.02562 * 11 10 8 38 38 H 0.97003 * 120.00182 * 94.99221 * 16 2 1 39 39 H 1.09001 * 109.64667 * 333.04174 * 21 19 17 40 40 H 1.08994 * 109.64571 * 93.33980 * 21 19 17 41 41 H 1.09005 * 110.02611 * 287.89032 * 22 21 19 42 42 H 1.09001 * 110.02620 * 166.47587 * 22 21 19 43 43 H 1.09008 * 110.79000 * 199.30209 * 23 22 21 44 44 H 1.08994 * 110.79294 * 75.83216 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6133 -1.3138 6 6 4.0748 -1.3351 -2.5628 7 7 5.5349 -1.2322 -2.6242 8 6 6.2186 -1.8065 -3.6624 9 1 5.6815 -2.3349 -4.4362 10 6 7.6017 -1.7042 -3.7236 11 7 8.2584 -2.2515 -4.7243 12 14 8.5307 -0.7897 -2.3857 13 1 8.8971 -1.7364 -1.3019 14 1 9.7635 -0.1923 -2.9589 15 1 7.6700 0.2867 -1.8326 16 7 2.0184 -0.6907 1.1961 17 6 2.1471 -0.0185 2.3571 18 8 1.8591 1.1584 2.4115 19 6 2.6489 -0.7291 3.5876 20 1 3.4306 -1.4404 3.3209 21 6 1.4874 -1.4494 4.3009 22 6 1.7501 -1.4278 5.8170 23 6 2.1502 0.0262 6.1771 24 16 3.2795 0.4802 4.8067 25 8 4.6123 0.1390 5.1622 26 8 2.9803 1.7963 4.3625 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.6054 -0.2617 -2.1370 31 1 1.7516 -1.7715 -1.2057 32 1 3.9995 -1.0729 -0.4261 33 1 3.8532 0.4369 -1.3573 34 1 3.6402 -0.8758 -3.4507 35 1 3.7864 -2.3852 -2.5188 36 1 6.0173 -0.7574 -1.9294 37 1 9.2248 -2.1804 -4.7670 38 1 2.2490 -1.6319 1.1525 39 1 0.5501 -0.9371 4.0840 40 1 1.4277 -2.4809 3.9540 41 1 2.5625 -2.1109 6.0649 42 1 0.8462 -1.7108 6.3565 43 1 2.6709 0.0584 7.1342 44 1 1.2755 0.6765 6.1891 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676022044.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:16 Heat of formation + Delta-G solvation = -101.572651 kcal Electronic energy + Delta-G solvation = -25104.576143 eV Core-core repulsion = 21377.436848 eV Total energy + Delta-G solvation = -3727.139295 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.30799 -37.36833 -37.19575 -36.53385 -36.05806 -35.05384 -32.75650 -31.66451 -30.47006 -29.63919 -26.29715 -25.90945 -22.95702 -22.28752 -21.53956 -21.00137 -20.73518 -19.08305 -18.00431 -17.51188 -17.36349 -16.63413 -16.30960 -15.57901 -15.44925 -14.87501 -14.67841 -14.49233 -14.38977 -14.12431 -13.94444 -13.71066 -13.21485 -13.05344 -12.81779 -12.60042 -12.39825 -12.36080 -12.29077 -12.24968 -12.15221 -11.73716 -11.69842 -11.33219 -11.11865 -11.01225 -10.91284 -10.71365 -10.56307 -10.43364 -10.11741 -10.08045 -9.58765 -9.29707 -8.88733 -7.22799 -5.76535 -3.12052 -0.38424 2.13501 2.21819 2.70557 3.26634 3.39478 3.43412 3.47380 3.64523 3.86433 4.01607 4.11977 4.21209 4.39534 4.54235 4.60376 4.62276 4.87418 4.92619 4.98360 5.02040 5.15544 5.22908 5.29587 5.32062 5.37247 5.48615 5.53210 5.64044 5.79609 5.88301 5.94838 6.04767 6.07387 6.25331 6.29632 6.72480 6.76001 7.15589 7.86789 7.99689 8.42780 9.21995 9.94690 10.14507 11.41918 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.014168 B = 0.003210 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.851093 B = 8721.356277 C = 9990.628744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.138 3.862 3 H 0.092 0.908 4 C -0.122 4.122 5 C -0.132 4.132 6 C 0.157 3.843 7 N -0.758 5.758 8 C -0.246 4.246 9 H 0.090 0.910 10 C 0.004 3.996 11 N -0.935 5.935 12 Si 0.884 3.116 13 H -0.284 1.284 14 H -0.290 1.290 15 H -0.277 1.277 16 N -0.711 5.711 17 C 0.533 3.467 18 O -0.500 6.500 19 C -0.604 4.604 20 H 0.161 0.839 21 C -0.100 4.100 22 C -0.119 4.119 23 C -0.592 4.592 24 S 2.406 3.594 25 O -0.931 6.931 26 O -0.891 6.891 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.083 0.917 31 H 0.070 0.930 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.026 0.974 35 H 0.025 0.975 36 H 0.361 0.639 37 H 0.260 0.740 38 H 0.403 0.597 39 H 0.088 0.912 40 H 0.099 0.901 41 H 0.090 0.910 42 H 0.101 0.899 43 H 0.139 0.861 44 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.509 0.490 23.538 31.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.034 3.966 3 H 0.111 0.889 4 C -0.161 4.161 5 C -0.170 4.170 6 C 0.030 3.970 7 N -0.404 5.404 8 C -0.375 4.375 9 H 0.107 0.893 10 C -0.192 4.192 11 N -0.583 5.583 12 Si 0.715 3.285 13 H -0.210 1.210 14 H -0.216 1.216 15 H -0.203 1.203 16 N -0.364 5.364 17 C 0.315 3.685 18 O -0.374 6.374 19 C -0.713 4.713 20 H 0.179 0.821 21 C -0.139 4.139 22 C -0.158 4.158 23 C -0.722 4.722 24 S 2.584 3.416 25 O -0.928 6.928 26 O -0.888 6.888 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.101 0.899 31 H 0.088 0.912 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.044 0.956 35 H 0.043 0.957 36 H 0.193 0.807 37 H 0.070 0.930 38 H 0.237 0.763 39 H 0.107 0.893 40 H 0.118 0.882 41 H 0.109 0.891 42 H 0.119 0.881 43 H 0.157 0.843 44 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -19.959 1.902 23.249 30.700 hybrid contribution 0.403 -0.655 0.852 1.148 sum -19.556 1.247 24.101 31.062 Atomic orbital electron populations 1.22167 0.95126 1.02080 1.02659 1.21152 0.93898 0.97986 0.83569 0.88947 1.21846 0.96570 1.00982 0.96689 1.21817 0.94139 1.01552 0.99520 1.20620 0.84913 0.97024 0.94423 1.42744 1.01733 1.66997 1.28920 1.19068 0.89928 1.27380 1.01160 0.89259 1.24682 0.96211 1.00506 0.97802 1.69701 1.07378 1.49488 1.31725 0.86548 0.79792 0.80031 0.82170 1.21027 1.21622 1.20303 1.46047 1.66872 1.14173 1.09291 1.19133 0.79028 0.86856 0.83471 1.90977 1.48261 1.13994 1.84132 1.30831 1.10683 1.18643 1.11133 0.82127 1.21883 0.96030 1.02758 0.93201 1.22212 1.05032 0.93526 0.95018 1.30712 1.17111 1.06322 1.18043 1.08996 0.76893 0.76890 0.78796 1.93648 1.31930 1.85113 1.82069 1.93718 1.84876 1.31590 1.78610 0.92447 0.92217 0.91311 0.89885 0.91164 0.92156 0.91823 0.95634 0.95714 0.80684 0.93040 0.76258 0.89293 0.88243 0.89109 0.88061 0.84315 0.84162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.38 9.48 37.16 0.35 -1.02 16 2 C 0.14 1.40 2.57 -67.93 -0.17 1.22 16 3 H 0.09 1.14 7.58 -51.93 -0.39 0.75 16 4 C -0.12 -1.28 4.75 -26.73 -0.13 -1.40 16 5 C -0.13 -1.91 5.22 -26.73 -0.14 -2.05 16 6 C 0.16 2.97 6.26 -4.04 -0.03 2.95 16 7 N -0.76 -18.43 5.41 -59.90 -0.32 -18.75 16 8 C -0.25 -7.10 10.47 -15.06 -0.16 -7.26 16 9 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 10 C 0.00 0.11 5.50 -17.43 -0.10 0.02 16 11 N -0.93 -29.81 13.97 55.49 0.78 -29.04 16 12 Si 0.88 22.69 27.74 -169.99 -4.72 17.98 16 13 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 14 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 15 H -0.28 -6.77 6.51 56.52 0.37 -6.40 16 16 N -0.71 -6.56 4.53 -53.81 -0.24 -6.80 16 17 C 0.53 5.72 6.87 -10.99 -0.08 5.64 16 18 O -0.50 -7.39 13.89 -18.21 -0.25 -7.64 16 19 C -0.60 -4.37 3.61 -27.28 -0.10 -4.47 16 20 H 0.16 0.84 8.14 -51.93 -0.42 0.42 16 21 C -0.10 -0.39 5.93 -25.66 -0.15 -0.55 16 22 C -0.12 -0.36 6.48 -25.19 -0.16 -0.52 16 23 C -0.59 -2.71 7.31 38.24 0.28 -2.44 16 24 S 2.41 22.48 5.92 -107.50 -0.64 21.84 16 25 O -0.93 -11.65 18.15 -57.73 -1.05 -12.70 16 26 O -0.89 -12.59 15.41 -67.05 -1.03 -13.62 16 27 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.85 7.75 -51.93 -0.40 0.44 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.36 8.61 5.53 -40.82 -0.23 8.39 16 37 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 38 H 0.40 2.77 8.60 -40.82 -0.35 2.42 16 39 H 0.09 0.36 7.85 -51.93 -0.41 -0.05 16 40 H 0.10 0.21 8.14 -51.93 -0.42 -0.21 16 41 H 0.09 0.19 8.14 -51.93 -0.42 -0.24 16 42 H 0.10 0.15 8.14 -51.93 -0.42 -0.28 16 43 H 0.14 0.44 8.14 -51.92 -0.42 0.01 16 44 H 0.14 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 367.85 15.07 5.54 5.54 Total: -1.00 -40.40 367.85 -9.80 -50.20 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -7.29 Total: 2.86 kcal Atomic # 6 Polarization: -9.29 SS G_CDS: -0.58 Total: -9.87 kcal Atomic # 7 Polarization: -54.79 SS G_CDS: 0.21 Total: -54.59 kcal Atomic # 8 Polarization: -31.63 SS G_CDS: -2.33 Total: -33.96 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -4.72 Total: 17.98 kcal Atomic # 16 Polarization: 22.48 SS G_CDS: -0.64 Total: 21.84 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -40.40 -9.80 -50.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676022044.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.374 kcal (2) G-P(sol) polarization free energy of solvation -40.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds