Wall clock time and date at job start Tue Mar 31 2020 05:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.46799 * 2 1 4 4 C 1.52996 * 109.47100 * 120.00278 * 2 1 3 5 5 C 1.53002 * 109.46935 * 185.00401 * 4 2 1 6 6 C 1.53004 * 109.47126 * 180.02562 * 5 4 2 7 7 N 1.46498 * 109.46870 * 179.97438 * 6 5 4 8 8 C 1.36942 * 119.99480 * 179.97438 * 7 6 5 9 9 H 1.08001 * 120.00525 * 0.02562 * 8 7 6 10 10 C 1.38813 * 119.99609 * 180.02562 * 8 7 6 11 11 N 1.31621 * 120.00259 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 119.99864 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47072 * 59.99880 * 12 10 8 14 14 H 1.48498 * 109.47140 * 180.02562 * 12 10 8 15 15 H 1.48506 * 109.47239 * 299.99888 * 12 10 8 16 16 N 1.46501 * 109.47367 * 240.00437 * 2 1 3 17 17 C 1.34775 * 119.99838 * 84.99434 * 16 2 1 18 18 O 1.21283 * 120.00382 * 0.02562 * 17 16 2 19 19 C 1.50702 * 119.99847 * 180.02562 * 17 16 2 20 20 H 1.09002 * 110.28173 * 39.30239 * 19 17 16 21 21 C 1.54164 * 110.31924 * 277.18738 * 19 17 16 22 22 C 1.54137 * 108.56968 * 213.12206 * 21 19 17 23 23 C 1.55046 * 106.64580 * 47.19397 * 22 21 19 24 24 S 1.82915 * 110.31798 * 161.41728 * 19 17 16 25 25 O 1.42100 * 109.35365 * 234.52609 * 24 19 17 26 26 O 1.42100 * 109.35426 * 7.59670 * 24 19 17 27 27 H 1.08994 * 109.47339 * 299.99495 * 1 2 3 28 28 H 1.08998 * 109.47041 * 60.00023 * 1 2 3 29 29 H 1.09005 * 109.46520 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47093 * 304.99960 * 4 2 1 31 31 H 1.08997 * 109.47189 * 65.00571 * 4 2 1 32 32 H 1.09004 * 109.46949 * 299.99834 * 5 4 2 33 33 H 1.08996 * 109.47757 * 59.99884 * 5 4 2 34 34 H 1.08991 * 109.47166 * 300.00092 * 6 5 4 35 35 H 1.09007 * 109.47080 * 60.00041 * 6 5 4 36 36 H 0.96997 * 120.00345 * 0.02562 * 7 6 5 37 37 H 0.97001 * 119.99820 * 180.02562 * 11 10 8 38 38 H 0.97001 * 120.00223 * 265.00066 * 16 2 1 39 39 H 1.08995 * 109.64612 * 332.93730 * 21 19 17 40 40 H 1.08993 * 109.64660 * 93.23870 * 21 19 17 41 41 H 1.08998 * 110.04073 * 287.88243 * 22 21 19 42 42 H 1.09005 * 109.99589 * 166.47540 * 22 21 19 43 43 H 1.09000 * 110.78851 * 199.27213 * 23 22 21 44 44 H 1.08998 * 110.79357 * 75.80201 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.6132 1.3136 6 6 4.0749 -1.3351 2.5625 7 7 5.5350 -1.2321 2.6239 8 6 6.2188 -1.8065 3.6621 9 1 5.6818 -2.3357 4.4353 10 6 7.6023 -1.7085 3.7205 11 7 8.2567 -1.0631 2.7784 12 14 8.5351 -2.4926 5.1362 13 1 8.2782 -3.9551 5.1486 14 1 9.9898 -2.2464 4.9672 15 1 8.0789 -1.8990 6.4188 16 7 2.0184 -0.6905 -1.1962 17 6 2.1470 -0.0181 -2.3571 18 8 1.8589 1.1588 -2.4115 19 6 2.6489 -0.7285 -3.5878 20 1 2.2313 -1.7340 -3.6403 21 6 4.1894 -0.7883 -3.5806 22 6 4.6904 -0.7089 -5.0361 23 6 3.9229 0.4593 -5.7070 24 16 2.2135 0.2194 -5.0903 25 8 1.5027 -0.6218 -5.9883 26 8 1.6656 1.4750 -4.7127 27 1 -0.3634 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 1.6054 -0.2618 2.1369 31 1 1.7517 -1.7715 1.2054 32 1 3.9995 -1.0727 0.4259 33 1 3.8532 0.4370 1.3573 34 1 3.6403 -0.8761 3.4504 35 1 3.7867 -2.3854 2.5183 36 1 6.0173 -0.7565 1.9296 37 1 9.2235 -0.9949 2.8191 38 1 2.2491 -1.6317 -1.1528 39 1 4.5860 0.0510 -3.0095 40 1 4.5177 -1.7243 -3.1288 41 1 4.4774 -1.6429 -5.5560 42 1 5.7619 -0.5089 -5.0511 43 1 3.9582 0.3723 -6.7929 44 1 4.3201 1.4207 -5.3816 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676022045.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:19 Heat of formation + Delta-G solvation = -106.639833 kcal Electronic energy + Delta-G solvation = -25072.642242 eV Core-core repulsion = 21345.283217 eV Total energy + Delta-G solvation = -3727.359024 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.21397 -37.31504 -37.06732 -36.44808 -35.97277 -34.89032 -32.71894 -31.56976 -30.22846 -29.32255 -26.16043 -25.66195 -23.17411 -22.21216 -21.54097 -20.85684 -20.67351 -19.03189 -17.90364 -17.26992 -17.05204 -16.53591 -16.26364 -15.57508 -15.19836 -14.76433 -14.74271 -14.41892 -14.22847 -14.16179 -13.77649 -13.51204 -13.07936 -13.00292 -12.81516 -12.57146 -12.30701 -12.26238 -12.23306 -12.15211 -12.09296 -11.54353 -11.35191 -11.21012 -11.02088 -10.87912 -10.84535 -10.61916 -10.52251 -10.45435 -10.07854 -9.98426 -9.71922 -9.21032 -8.89571 -6.95199 -5.79571 -3.08271 -0.31223 2.19516 2.30315 2.79658 3.32932 3.41443 3.45817 3.46901 3.74208 3.98525 4.15277 4.25256 4.32403 4.53309 4.54290 4.65991 4.73582 4.99261 5.04703 5.10578 5.13898 5.37743 5.38448 5.43713 5.51700 5.54204 5.55106 5.59657 5.74008 5.90315 6.03875 6.06048 6.15932 6.31025 6.36069 6.38354 6.81890 6.85453 7.24343 7.66302 7.95602 8.39670 9.50489 10.09058 10.43428 11.43331 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.016503 B = 0.002836 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.259664 B = 9870.203750 C =11179.809803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.139 3.861 3 H 0.092 0.908 4 C -0.123 4.123 5 C -0.126 4.126 6 C 0.153 3.847 7 N -0.735 5.735 8 C -0.241 4.241 9 H 0.069 0.931 10 C -0.014 4.014 11 N -0.934 5.934 12 Si 0.908 3.092 13 H -0.286 1.286 14 H -0.291 1.291 15 H -0.286 1.286 16 N -0.711 5.711 17 C 0.533 3.467 18 O -0.500 6.500 19 C -0.601 4.601 20 H 0.158 0.842 21 C -0.104 4.104 22 C -0.119 4.119 23 C -0.590 4.590 24 S 2.406 3.594 25 O -0.937 6.937 26 O -0.893 6.893 27 H 0.068 0.932 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.017 0.983 35 H 0.016 0.984 36 H 0.383 0.617 37 H 0.255 0.745 38 H 0.402 0.598 39 H 0.093 0.907 40 H 0.102 0.898 41 H 0.089 0.911 42 H 0.103 0.897 43 H 0.138 0.862 44 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.568 -0.346 -17.017 21.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.035 3.965 3 H 0.110 0.890 4 C -0.161 4.161 5 C -0.164 4.164 6 C 0.025 3.975 7 N -0.379 5.379 8 C -0.372 4.372 9 H 0.087 0.913 10 C -0.210 4.210 11 N -0.583 5.583 12 Si 0.739 3.261 13 H -0.213 1.213 14 H -0.217 1.217 15 H -0.213 1.213 16 N -0.363 5.363 17 C 0.315 3.685 18 O -0.374 6.374 19 C -0.710 4.710 20 H 0.176 0.824 21 C -0.143 4.143 22 C -0.158 4.158 23 C -0.720 4.720 24 S 2.584 3.416 25 O -0.934 6.934 26 O -0.890 6.890 27 H 0.087 0.913 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.099 0.901 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.035 0.965 35 H 0.034 0.966 36 H 0.216 0.784 37 H 0.065 0.935 38 H 0.237 0.763 39 H 0.111 0.889 40 H 0.121 0.879 41 H 0.108 0.892 42 H 0.122 0.878 43 H 0.156 0.844 44 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -13.622 0.713 -17.222 21.969 hybrid contribution 1.683 -1.217 0.934 2.277 sum -11.939 -0.504 -16.288 20.201 Atomic orbital electron populations 1.22198 0.95263 1.02120 1.02735 1.21134 0.93789 0.97955 0.83587 0.88969 1.21856 0.96904 1.00799 0.96574 1.21741 0.93621 1.01497 0.99511 1.20647 0.86193 0.96417 0.94236 1.42368 1.00178 1.66240 1.29069 1.19200 0.89451 1.27195 1.01356 0.91277 1.24747 0.96441 1.01184 0.98661 1.69650 1.07263 1.46936 1.34466 0.86258 0.78969 0.78956 0.81938 1.21271 1.21653 1.21252 1.46032 1.66769 1.14239 1.09272 1.19147 0.78544 0.87039 0.83754 1.90980 1.48373 1.14123 1.83948 1.30810 1.07425 1.16088 1.16657 0.82394 1.21981 0.87602 1.06643 0.98024 1.22261 1.03073 0.96728 0.93706 1.30689 1.22458 1.07821 1.11011 1.08957 0.78861 0.76636 0.77099 1.93621 1.69516 1.69259 1.60996 1.93715 1.75178 1.38823 1.81267 0.91308 0.92108 0.92459 0.90107 0.91372 0.92091 0.91888 0.96483 0.96599 0.78362 0.93472 0.76284 0.88882 0.87900 0.89232 0.87807 0.84378 0.84028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 9.48 37.16 0.35 -1.26 16 2 C 0.14 1.52 2.57 -67.93 -0.17 1.34 16 3 H 0.09 1.18 7.58 -51.93 -0.39 0.79 16 4 C -0.12 -1.36 4.75 -26.73 -0.13 -1.49 16 5 C -0.13 -1.87 5.22 -26.73 -0.14 -2.01 16 6 C 0.15 2.96 6.26 -4.04 -0.03 2.93 16 7 N -0.73 -18.49 5.60 -59.91 -0.34 -18.83 16 8 C -0.24 -6.73 9.99 -15.06 -0.15 -6.88 16 9 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 10 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 11 N -0.93 -28.03 13.06 55.49 0.72 -27.30 16 12 Si 0.91 22.22 29.55 -169.99 -5.02 17.19 16 13 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 14 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 15 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 16 N -0.71 -7.11 4.53 -53.80 -0.24 -7.36 16 17 C 0.53 6.13 6.89 -10.98 -0.08 6.05 16 18 O -0.50 -7.79 13.85 -18.28 -0.25 -8.04 16 19 C -0.60 -4.77 3.60 -27.27 -0.10 -4.87 16 20 H 0.16 0.79 8.14 -51.93 -0.42 0.37 16 21 C -0.10 -0.67 5.95 -25.53 -0.15 -0.83 16 22 C -0.12 -0.60 6.48 -25.06 -0.16 -0.76 16 23 C -0.59 -3.45 7.31 38.24 0.28 -3.17 16 24 S 2.41 22.80 5.92 -107.50 -0.64 22.16 16 25 O -0.94 -11.09 18.15 -57.73 -1.05 -12.13 16 26 O -0.89 -12.67 15.38 -67.08 -1.03 -13.70 16 27 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.89 7.75 -51.93 -0.40 0.49 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.02 0.31 8.14 -51.92 -0.42 -0.11 16 36 H 0.38 10.10 7.67 -40.82 -0.31 9.79 16 37 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 38 H 0.40 3.10 8.60 -40.82 -0.35 2.75 16 39 H 0.09 0.71 7.85 -51.93 -0.41 0.30 16 40 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 42 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.14 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.14 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 370.94 15.07 5.59 5.59 Total: -1.00 -38.28 370.94 -10.16 -48.44 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -7.33 Total: 5.43 kcal Atomic # 6 Polarization: -10.88 SS G_CDS: -0.57 Total: -11.45 kcal Atomic # 7 Polarization: -53.63 SS G_CDS: 0.15 Total: -53.49 kcal Atomic # 8 Polarization: -31.55 SS G_CDS: -2.33 Total: -33.88 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.19 kcal Atomic # 16 Polarization: 22.80 SS G_CDS: -0.64 Total: 22.16 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -38.28 -10.16 -48.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676022045.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.204 kcal (2) G-P(sol) polarization free energy of solvation -38.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds