Wall clock time and date at job start Tue Mar 31 2020 05:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46567 * 2 1 4 4 C 1.52997 * 109.47248 * 119.99712 * 2 1 3 5 5 C 1.52992 * 109.47482 * 185.00368 * 4 2 1 6 6 C 1.52997 * 109.47482 * 179.97438 * 5 4 2 7 7 N 1.46505 * 109.47212 * 179.97438 * 6 5 4 8 8 C 1.36936 * 119.99992 * 179.97438 * 7 6 5 9 9 H 1.08006 * 119.99834 * 0.02562 * 8 7 6 10 10 C 1.38801 * 120.00093 * 180.02562 * 8 7 6 11 11 N 1.31619 * 120.00176 * 0.02562 * 10 8 7 12 12 Si 1.86804 * 120.00265 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.46968 * 0.02562 * 12 10 8 14 14 H 1.48497 * 109.47299 * 119.99957 * 12 10 8 15 15 H 1.48495 * 109.47075 * 240.00117 * 12 10 8 16 16 N 1.46502 * 109.47350 * 239.99785 * 2 1 3 17 17 C 1.34779 * 119.99830 * 84.99913 * 16 2 1 18 18 O 1.21282 * 120.00222 * 0.02562 * 17 16 2 19 19 C 1.50700 * 119.99859 * 180.02562 * 17 16 2 20 20 H 1.09003 * 110.27938 * 325.69847 * 19 17 16 21 21 C 1.54161 * 110.32189 * 87.81310 * 19 17 16 22 22 C 1.54013 * 108.63075 * 146.72945 * 21 19 17 23 23 C 1.55046 * 106.70006 * 312.95011 * 22 21 19 24 24 S 1.82917 * 110.31699 * 203.58616 * 19 17 16 25 25 O 1.42101 * 109.35660 * 352.36975 * 24 19 17 26 26 O 1.42098 * 109.35439 * 125.43964 * 24 19 17 27 27 H 1.09000 * 109.47144 * 60.00430 * 1 2 3 28 28 H 1.09003 * 109.47011 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47183 * 300.00196 * 1 2 3 30 30 H 1.09002 * 109.47153 * 65.00152 * 4 2 1 31 31 H 1.09001 * 109.46832 * 305.00343 * 4 2 1 32 32 H 1.09002 * 109.47103 * 59.99753 * 5 4 2 33 33 H 1.08998 * 109.46862 * 300.00565 * 5 4 2 34 34 H 1.09002 * 109.47153 * 59.99783 * 6 5 4 35 35 H 1.09001 * 109.46832 * 299.99974 * 6 5 4 36 36 H 0.96996 * 119.99606 * 0.02562 * 7 6 5 37 37 H 0.97001 * 120.00803 * 179.97438 * 11 10 8 38 38 H 0.96997 * 120.00251 * 265.00437 * 16 2 1 39 39 H 1.08996 * 109.64763 * 266.66554 * 21 19 17 40 40 H 1.09003 * 109.64728 * 26.96335 * 21 19 17 41 41 H 1.09003 * 110.03392 * 193.61279 * 22 21 19 42 42 H 1.08996 * 109.99524 * 72.26660 * 22 21 19 43 43 H 1.08998 * 110.79337 * 284.11645 * 23 22 21 44 44 H 1.09005 * 110.95351 * 160.72818 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.6132 1.3138 6 6 4.0748 -1.3338 2.5634 7 7 5.5349 -1.2308 2.6248 8 6 6.2186 -1.8042 3.6635 9 1 5.6814 -2.3327 4.4373 10 6 7.6019 -1.7062 3.7220 11 7 8.2565 -1.0618 2.7794 12 14 8.5347 -2.4890 5.1386 13 1 7.5743 -3.1498 6.0586 14 1 9.4853 -3.4987 4.6075 15 1 9.2860 -1.4413 5.8755 16 7 2.0184 -0.6907 -1.1961 17 6 2.1471 -0.0183 -2.3571 18 8 1.8591 1.1586 -2.4115 19 6 2.6490 -0.7289 -3.5877 20 1 3.3853 -1.4845 -3.3138 21 6 1.4748 -1.3765 -4.3482 22 6 1.7833 -1.3357 -5.8566 23 6 2.2671 0.1028 -6.1736 24 16 3.3763 0.4707 -4.7615 25 8 3.1283 1.7914 -4.2995 26 8 4.7014 0.0706 -5.0832 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.7517 -1.7715 1.2056 31 1 1.6054 -0.2616 2.1369 32 1 3.8531 0.4371 1.3574 33 1 3.9994 -1.0726 0.4261 34 1 3.7864 -2.3841 2.5202 35 1 3.6400 -0.8738 3.4508 36 1 6.0172 -0.7559 1.9301 37 1 9.2232 -0.9930 2.8203 38 1 2.2491 -1.6318 -1.1526 39 1 1.3544 -2.4104 -4.0248 40 1 0.5578 -0.8225 -4.1472 41 1 0.8829 -1.5611 -6.4281 42 1 2.5668 -2.0544 -6.0964 43 1 1.4273 0.7972 -6.1970 44 1 2.8166 0.1308 -7.1146 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676022046.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:21 Heat of formation + Delta-G solvation = -105.798735 kcal Electronic energy + Delta-G solvation = -25008.050767 eV Core-core repulsion = 21280.728216 eV Total energy + Delta-G solvation = -3727.322552 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.22244 -37.28156 -37.10586 -36.43434 -35.97365 -34.85924 -32.70470 -31.56622 -30.24285 -29.32704 -26.21495 -25.65926 -23.15238 -22.28343 -21.55813 -20.82885 -20.66443 -19.00573 -17.92647 -17.28778 -17.00847 -16.56978 -16.23177 -15.50370 -15.35792 -14.78221 -14.67275 -14.38976 -14.29695 -14.12388 -13.73624 -13.52750 -13.19280 -12.98133 -12.84175 -12.60391 -12.33614 -12.27039 -12.21897 -12.14250 -12.06326 -11.63283 -11.33145 -11.20071 -11.03919 -10.86608 -10.81679 -10.64145 -10.47833 -10.42233 -10.03197 -9.97477 -9.68510 -9.20713 -8.86053 -6.90279 -5.74294 -3.03501 -0.30908 2.20800 2.31043 2.78729 3.34663 3.44429 3.49418 3.52247 3.71879 3.93941 4.08401 4.18583 4.28639 4.46566 4.56189 4.65595 4.74320 4.95875 5.00662 5.05217 5.11214 5.21284 5.29077 5.38090 5.38530 5.51609 5.58505 5.58828 5.74805 5.91344 6.01580 6.07916 6.18040 6.34470 6.37986 6.40100 6.85646 6.88989 7.24257 7.71439 7.95209 8.44477 9.55248 10.14134 10.48321 11.48641 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.015447 B = 0.002842 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.256413 B = 9849.379513 C =10985.889138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.138 3.862 3 H 0.093 0.907 4 C -0.122 4.122 5 C -0.128 4.128 6 C 0.153 3.847 7 N -0.735 5.735 8 C -0.240 4.240 9 H 0.070 0.930 10 C -0.015 4.015 11 N -0.933 5.933 12 Si 0.907 3.093 13 H -0.281 1.281 14 H -0.291 1.291 15 H -0.291 1.291 16 N -0.711 5.711 17 C 0.534 3.466 18 O -0.501 6.501 19 C -0.604 4.604 20 H 0.161 0.839 21 C -0.099 4.099 22 C -0.119 4.119 23 C -0.593 4.593 24 S 2.407 3.593 25 O -0.892 6.892 26 O -0.929 6.929 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.016 0.984 35 H 0.017 0.983 36 H 0.384 0.616 37 H 0.255 0.745 38 H 0.403 0.597 39 H 0.099 0.901 40 H 0.088 0.912 41 H 0.100 0.900 42 H 0.090 0.910 43 H 0.140 0.860 44 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.271 -2.011 -19.197 27.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.034 3.966 3 H 0.111 0.889 4 C -0.161 4.161 5 C -0.166 4.166 6 C 0.026 3.974 7 N -0.379 5.379 8 C -0.371 4.371 9 H 0.088 0.912 10 C -0.211 4.211 11 N -0.581 5.581 12 Si 0.738 3.262 13 H -0.206 1.206 14 H -0.219 1.219 15 H -0.218 1.218 16 N -0.363 5.363 17 C 0.316 3.684 18 O -0.375 6.375 19 C -0.713 4.713 20 H 0.179 0.821 21 C -0.138 4.138 22 C -0.158 4.158 23 C -0.722 4.722 24 S 2.585 3.415 25 O -0.889 6.889 26 O -0.926 6.926 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.099 0.901 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.034 0.966 35 H 0.035 0.965 36 H 0.217 0.783 37 H 0.065 0.935 38 H 0.237 0.763 39 H 0.117 0.883 40 H 0.107 0.893 41 H 0.119 0.881 42 H 0.109 0.891 43 H 0.158 0.842 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -19.706 -0.609 -18.936 27.336 hybrid contribution 0.325 -1.495 0.513 1.613 sum -19.381 -2.103 -18.423 26.822 Atomic orbital electron populations 1.22170 0.95249 1.01996 1.02597 1.21149 0.93760 0.98055 0.83620 0.88914 1.21853 0.96937 1.00750 0.96549 1.21761 0.93609 1.01659 0.99585 1.20638 0.86238 0.96374 0.94163 1.42400 1.00191 1.66306 1.29038 1.19274 0.89451 1.27160 1.01255 0.91181 1.24764 0.96475 1.01224 0.98658 1.69673 1.07178 1.46945 1.34331 0.86112 0.79888 0.78495 0.81659 1.20585 1.21860 1.21835 1.46033 1.66834 1.14155 1.09282 1.19108 0.79025 0.86823 0.83441 1.90956 1.48318 1.14036 1.84189 1.30831 1.11283 1.18721 1.10418 0.82148 1.21897 0.95817 1.03349 0.92717 1.22225 1.04517 0.93669 0.95363 1.30708 1.16768 1.06053 1.18679 1.08987 0.76830 0.76844 0.78879 1.93715 1.85519 1.31501 1.78164 1.93653 1.32071 1.84060 1.82799 0.92249 0.92517 0.91363 0.91378 0.90089 0.91781 0.92091 0.96621 0.96483 0.78301 0.93519 0.76272 0.88293 0.89318 0.88127 0.89136 0.84177 0.84338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.47 9.48 37.16 0.35 -1.12 16 2 C 0.14 1.51 2.57 -67.93 -0.17 1.34 16 3 H 0.09 1.23 7.58 -51.93 -0.39 0.83 16 4 C -0.12 -1.39 4.75 -26.74 -0.13 -1.52 16 5 C -0.13 -2.02 5.22 -26.74 -0.14 -2.15 16 6 C 0.15 3.07 6.26 -4.04 -0.03 3.05 16 7 N -0.74 -19.17 5.60 -59.91 -0.34 -19.51 16 8 C -0.24 -6.88 9.99 -15.06 -0.15 -7.03 16 9 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 10 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 11 N -0.93 -28.92 13.06 55.49 0.72 -28.19 16 12 Si 0.91 22.74 29.55 -169.99 -5.02 17.72 16 13 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 14 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 15 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 16 N -0.71 -7.17 4.53 -53.80 -0.24 -7.41 16 17 C 0.53 6.15 6.83 -10.98 -0.08 6.08 16 18 O -0.50 -7.77 14.00 -18.01 -0.25 -8.02 16 19 C -0.60 -4.81 3.60 -27.28 -0.10 -4.91 16 20 H 0.16 0.96 8.14 -51.93 -0.42 0.54 16 21 C -0.10 -0.45 5.95 -25.60 -0.15 -0.60 16 22 C -0.12 -0.42 6.48 -25.12 -0.16 -0.58 16 23 C -0.59 -3.05 7.31 38.24 0.28 -2.77 16 24 S 2.41 24.22 5.91 -107.50 -0.64 23.58 16 25 O -0.89 -13.27 15.48 -66.98 -1.04 -14.31 16 26 O -0.93 -12.34 18.15 -57.73 -1.05 -13.39 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 33 H 0.06 0.96 7.75 -51.93 -0.40 0.56 16 34 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.38 10.57 7.67 -40.82 -0.31 10.25 16 37 H 0.25 7.61 8.31 -40.82 -0.34 7.27 16 38 H 0.40 3.14 8.60 -40.82 -0.35 2.79 16 39 H 0.10 0.27 8.14 -51.93 -0.42 -0.16 16 40 H 0.09 0.42 7.85 -51.93 -0.41 0.01 16 41 H 0.10 0.19 8.14 -51.93 -0.42 -0.23 16 42 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 43 H 0.14 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.14 0.51 8.14 -51.93 -0.42 0.08 16 LS Contribution 371.13 15.07 5.59 5.59 Total: -1.00 -39.77 371.13 -10.16 -49.93 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -7.33 Total: 4.78 kcal Atomic # 6 Polarization: -10.20 SS G_CDS: -0.57 Total: -10.77 kcal Atomic # 7 Polarization: -55.26 SS G_CDS: 0.15 Total: -55.11 kcal Atomic # 8 Polarization: -33.38 SS G_CDS: -2.34 Total: -35.71 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.02 Total: 17.72 kcal Atomic # 16 Polarization: 24.22 SS G_CDS: -0.64 Total: 23.58 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -39.77 -10.16 -49.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676022046.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.871 kcal (2) G-P(sol) polarization free energy of solvation -39.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds