Wall clock time and date at job start Tue Mar 31 2020 05:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 S 1.81396 * 109.47550 * 180.02562 * 3 2 1 5 5 O 1.42102 * 108.57651 * 294.48977 * 4 3 2 6 6 O 1.42095 * 108.57983 * 65.51412 * 4 3 2 7 7 C 1.81403 * 101.92266 * 180.02562 * 4 3 2 8 8 C 1.50699 * 109.46930 * 180.02562 * 7 4 3 9 9 O 1.21280 * 120.00240 * 359.97438 * 8 7 4 10 10 N 1.34783 * 119.99734 * 179.97438 * 8 7 4 11 11 C 1.46504 * 119.99545 * 179.97438 * 10 8 7 12 12 H 1.08998 * 110.64429 * 325.69741 * 11 10 8 13 13 C 1.55152 * 110.71753 * 88.84403 * 11 10 8 14 14 C 1.54912 * 101.57996 * 153.86276 * 13 11 10 15 15 N 1.47422 * 104.83450 * 322.98641 * 14 13 11 16 16 C 1.36937 * 125.65386 * 204.09097 * 15 14 13 17 17 H 1.07995 * 120.00067 * 180.02562 * 16 15 14 18 18 C 1.38809 * 119.99855 * 0.02812 * 16 15 14 19 19 N 1.31626 * 120.00086 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00243 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46927 * 59.99706 * 20 18 16 22 22 H 1.48494 * 109.47439 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47027 * 299.99718 * 20 18 16 24 24 C 1.47328 * 108.73371 * 24.28526 * 15 14 13 25 25 H 1.08998 * 109.85085 * 239.39011 * 24 15 14 26 26 C 1.52997 * 110.06191 * 118.12596 * 24 15 14 27 27 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 30 30 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 31 31 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 32 32 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 33 33 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 34 34 H 1.09002 * 109.46957 * 299.99365 * 7 4 3 35 35 H 1.08997 * 109.47294 * 60.00137 * 7 4 3 36 36 H 0.96992 * 119.99968 * 0.02562 * 10 8 7 37 37 H 1.08999 * 111.00155 * 271.92913 * 13 11 10 38 38 H 1.08998 * 111.01015 * 35.78853 * 13 11 10 39 39 H 1.08997 * 110.36922 * 81.82494 * 14 13 11 40 40 H 1.08996 * 110.36708 * 204.04088 * 14 13 11 41 41 H 0.96995 * 120.00414 * 180.02562 * 19 18 16 42 42 H 1.09000 * 109.47651 * 302.27175 * 26 24 15 43 43 H 1.08999 * 109.46959 * 62.27184 * 26 24 15 44 44 H 1.09003 * 109.47159 * 182.26652 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 3.8540 1.4425 -0.0008 5 8 4.3072 0.8840 1.2248 6 8 4.3062 0.8845 -1.2268 7 6 4.2287 3.2175 0.0001 8 6 5.7226 3.4154 -0.0010 9 8 6.4618 2.4539 -0.0018 10 7 6.2373 4.6611 -0.0011 11 6 7.6896 4.8535 -0.0017 12 1 8.1815 4.0687 0.5729 13 6 8.2370 4.8967 -1.4528 14 6 9.5211 5.7449 -1.2756 15 7 9.1662 6.7612 -0.2684 16 6 9.7710 7.9804 -0.1171 17 1 9.4364 8.6571 0.6551 18 6 10.8143 8.3464 -0.9564 19 7 11.2226 7.5214 -1.8973 20 14 11.6391 10.0098 -0.7506 21 1 12.2229 10.1076 0.6114 22 1 12.7162 10.1568 -1.7621 23 1 10.6341 11.0870 -0.9369 24 6 8.0559 6.2467 0.5521 25 1 7.1977 6.9141 0.4738 26 6 8.4944 6.1272 2.0129 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.6766 1.9564 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 3.8007 3.6796 -0.8895 35 1 3.8014 3.6786 0.8906 36 1 5.6461 5.4301 -0.0001 37 1 8.4767 3.8951 -1.8098 38 1 7.5321 5.3901 -2.1218 39 1 10.3399 5.1228 -0.9145 40 1 9.7942 6.2210 -2.2173 41 1 11.9518 7.7770 -2.4835 42 1 9.3644 5.4739 2.0790 43 1 8.7514 7.1143 2.3971 44 1 7.6797 5.7083 2.6037 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689336493.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:06 Heat of formation + Delta-G solvation = -84.973195 kcal Electronic energy + Delta-G solvation = -25103.502377 eV Core-core repulsion = 21377.082888 eV Total energy + Delta-G solvation = -3726.419489 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -39.91582 -37.67694 -37.12661 -36.17312 -35.29101 -34.20522 -32.26130 -30.79458 -30.33097 -28.51047 -28.08643 -24.73858 -24.02533 -22.47182 -20.98418 -20.27026 -19.78473 -19.00363 -17.63839 -16.93085 -16.75108 -16.66995 -16.25377 -15.69264 -15.50116 -14.90881 -14.71038 -14.03898 -13.98526 -13.89816 -13.49780 -13.06765 -13.02552 -13.00054 -12.79157 -12.17709 -12.17498 -12.11459 -12.00812 -11.93143 -11.62218 -11.39416 -11.31143 -11.18437 -10.89472 -10.87812 -10.74493 -10.63331 -10.54066 -10.15704 -10.04960 -9.80168 -9.60431 -8.81765 -8.67641 -6.91813 -5.68428 -3.11867 -0.38917 2.42076 2.48762 2.91091 3.37636 3.42023 3.43711 3.57924 3.71869 4.10356 4.20583 4.35545 4.47185 4.57958 4.63521 4.82723 4.87467 5.04549 5.14868 5.20753 5.37891 5.47682 5.47972 5.49466 5.57189 5.67415 5.75866 6.06017 6.16718 6.23915 6.28772 6.46403 6.52293 6.67487 6.79886 7.00892 7.41461 7.51036 7.57977 7.81999 8.07232 8.31506 9.16979 9.77539 10.41262 11.34805 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.039973 B = 0.002477 C = 0.002445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.310761 B =11299.109783 C =11450.774425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.118 4.118 3 C -0.621 4.621 4 S 2.451 3.549 5 O -0.919 6.919 6 O -0.918 6.918 7 C -0.661 4.661 8 C 0.538 3.462 9 O -0.531 6.531 10 N -0.702 5.702 11 C 0.130 3.870 12 H 0.097 0.903 13 C -0.154 4.154 14 C 0.153 3.847 15 N -0.595 5.595 16 C -0.222 4.222 17 H 0.077 0.923 18 C -0.010 4.010 19 N -0.921 5.921 20 Si 0.915 3.085 21 H -0.285 1.285 22 H -0.290 1.290 23 H -0.285 1.285 24 C 0.155 3.845 25 H 0.037 0.963 26 C -0.156 4.156 27 H 0.058 0.942 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.133 0.867 33 H 0.133 0.867 34 H 0.159 0.841 35 H 0.158 0.842 36 H 0.401 0.599 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.016 0.984 40 H 0.110 0.890 41 H 0.254 0.746 42 H 0.053 0.947 43 H 0.055 0.945 44 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.743 -9.556 3.681 24.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.156 4.156 3 C -0.749 4.749 4 S 2.629 3.371 5 O -0.916 6.916 6 O -0.915 6.915 7 C -0.789 4.789 8 C 0.321 3.679 9 O -0.408 6.408 10 N -0.351 5.351 11 C 0.026 3.974 12 H 0.115 0.885 13 C -0.194 4.194 14 C 0.028 3.972 15 N -0.321 5.321 16 C -0.350 4.350 17 H 0.095 0.905 18 C -0.206 4.206 19 N -0.568 5.568 20 Si 0.746 3.254 21 H -0.212 1.212 22 H -0.216 1.216 23 H -0.212 1.212 24 C 0.047 3.953 25 H 0.054 0.946 26 C -0.216 4.216 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.152 0.848 33 H 0.151 0.849 34 H 0.176 0.824 35 H 0.176 0.824 36 H 0.236 0.764 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.034 0.966 40 H 0.128 0.872 41 H 0.064 0.936 42 H 0.072 0.928 43 H 0.074 0.926 44 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -21.401 -10.767 3.568 24.221 hybrid contribution -0.504 2.198 0.190 2.263 sum -21.905 -8.569 3.758 23.820 Atomic orbital electron populations 1.21731 0.93885 1.02437 1.02330 1.21275 0.98373 0.91785 1.04197 1.30503 1.26212 1.06562 1.11650 1.07463 0.77305 0.76486 0.75889 1.93586 1.78513 1.73711 1.45837 1.93591 1.78491 1.73678 1.45738 1.30883 1.03710 1.30985 1.13274 1.19034 0.87180 0.84514 0.77123 1.90866 1.60514 1.39505 1.49917 1.45942 1.08914 1.06900 1.73383 1.22324 0.77722 0.98709 0.98671 0.88470 1.23426 1.00619 1.00745 0.94608 1.21961 0.90145 0.88472 0.96652 1.44562 1.37097 1.15716 1.34676 1.18964 1.11724 0.90916 1.13443 0.90504 1.24802 0.98824 0.98600 0.98350 1.69780 1.30255 1.35188 1.21625 0.86146 0.78908 0.83163 0.77202 1.21211 1.21567 1.21197 1.21044 0.92364 0.90913 0.90975 0.94569 1.22246 1.00277 1.01730 0.97331 0.92254 0.91844 0.92239 0.90011 0.89989 0.84845 0.84870 0.82351 0.82400 0.76385 0.91645 0.91876 0.96621 0.87198 0.93571 0.92760 0.92608 0.94268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.67 9.91 37.16 0.37 -0.30 16 2 C -0.12 -0.72 5.94 -26.73 -0.16 -0.88 16 3 C -0.62 -3.08 5.81 37.16 0.22 -2.87 16 4 S 2.45 24.73 3.96 -107.50 -0.43 24.30 16 5 O -0.92 -12.95 17.95 -59.52 -1.07 -14.02 16 6 O -0.92 -13.12 17.95 -59.53 -1.07 -14.19 16 7 C -0.66 -5.29 6.29 36.01 0.23 -5.07 16 8 C 0.54 7.74 7.85 -10.98 -0.09 7.66 16 9 O -0.53 -10.12 15.31 2.55 0.04 -10.08 16 10 N -0.70 -9.82 5.19 -52.03 -0.27 -10.09 16 11 C 0.13 2.34 2.79 -66.09 -0.18 2.16 16 12 H 0.10 1.89 7.33 -51.93 -0.38 1.51 16 13 C -0.15 -3.06 6.77 -24.58 -0.17 -3.22 16 14 C 0.15 3.70 5.89 -2.53 -0.01 3.69 16 15 N -0.60 -14.62 3.14 -162.35 -0.51 -15.13 16 16 C -0.22 -5.96 9.91 -15.06 -0.15 -6.11 16 17 H 0.08 1.98 7.83 -52.49 -0.41 1.57 16 18 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 19 N -0.92 -26.44 10.09 55.49 0.56 -25.88 16 20 Si 0.92 21.68 29.55 -169.99 -5.02 16.65 16 21 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 24 C 0.16 3.04 3.49 -66.78 -0.23 2.81 16 25 H 0.04 0.68 7.70 -51.93 -0.40 0.28 16 26 C -0.16 -2.85 9.15 37.16 0.34 -2.51 16 27 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 30 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.13 0.34 8.14 -51.92 -0.42 -0.09 16 33 H 0.13 0.32 8.14 -51.92 -0.42 -0.10 16 34 H 0.16 0.68 8.14 -51.92 -0.42 0.25 16 35 H 0.16 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.40 4.28 8.34 -40.82 -0.34 3.94 16 37 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 39 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.11 2.97 5.88 -51.93 -0.31 2.67 16 41 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 42 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.05 1.04 8.06 -51.93 -0.42 0.62 16 44 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 371.16 15.07 5.59 5.59 Total: -1.00 -37.85 371.16 -9.42 -47.27 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -7.31 Total: 0.59 kcal Atomic # 6 Polarization: -5.08 SS G_CDS: 0.06 Total: -5.02 kcal Atomic # 7 Polarization: -50.88 SS G_CDS: -0.22 Total: -51.10 kcal Atomic # 8 Polarization: -36.19 SS G_CDS: -2.10 Total: -38.29 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: 24.73 SS G_CDS: -0.43 Total: 24.30 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -37.85 -9.42 -47.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689336493.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.701 kcal (2) G-P(sol) polarization free energy of solvation -37.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds