Wall clock time and date at job start Tue Mar 31 2020 05:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 109.47182 * 2 1 4 4 N 1.46500 * 109.47126 * 240.00573 * 2 1 3 5 5 C 1.34774 * 120.00067 * 84.99905 * 4 2 1 6 6 O 1.21277 * 120.00154 * 0.02562 * 5 4 2 7 7 C 1.50704 * 119.99984 * 180.02562 * 5 4 2 8 8 S 1.81404 * 109.47040 * 179.97438 * 7 5 4 9 9 C 1.81405 * 101.92008 * 179.97438 * 8 7 5 10 10 O 1.42100 * 108.58017 * 65.51383 * 8 7 5 11 11 O 1.42097 * 108.58012 * 294.48473 * 8 7 5 12 12 C 1.53005 * 109.47414 * 120.00519 * 2 1 3 13 13 H 1.08999 * 109.49897 * 179.97438 * 12 2 1 14 14 C 1.53043 * 109.49258 * 300.06483 * 12 2 1 15 15 C 1.53044 * 109.53410 * 181.31565 * 14 12 2 16 16 C 1.53194 * 109.31071 * 298.63293 * 15 14 12 17 17 N 1.46931 * 108.77544 * 54.63526 * 16 15 14 18 18 C 1.36942 * 120.62909 * 126.38639 * 17 16 15 19 19 H 1.08005 * 119.99639 * 332.53871 * 18 17 16 20 20 C 1.38805 * 119.99854 * 152.53317 * 18 17 16 21 21 N 1.31620 * 120.00000 * 159.35135 * 20 18 17 22 22 Si 1.86801 * 120.00062 * 339.35598 * 20 18 17 23 23 H 1.48496 * 109.47123 * 92.97421 * 22 20 18 24 24 H 1.48504 * 109.46971 * 212.97327 * 22 20 18 25 25 H 1.48501 * 109.47153 * 332.97154 * 22 20 18 26 26 C 1.46926 * 118.76547 * 306.41574 * 17 16 15 27 27 H 1.09000 * 109.47184 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47105 * 299.99446 * 1 2 3 29 29 H 1.09000 * 109.47284 * 59.99107 * 1 2 3 30 30 H 0.96995 * 119.99833 * 264.99892 * 4 2 1 31 31 H 1.08993 * 109.47198 * 59.99813 * 7 5 4 32 32 H 1.08996 * 109.47072 * 299.99688 * 7 5 4 33 33 H 1.08996 * 109.46837 * 60.00107 * 9 8 7 34 34 H 1.08998 * 109.47020 * 299.99786 * 9 8 7 35 35 H 1.09003 * 109.47119 * 180.02562 * 9 8 7 36 36 H 1.09001 * 109.46246 * 301.33397 * 14 12 2 37 37 H 1.08999 * 109.46437 * 61.30834 * 14 12 2 38 38 H 1.08999 * 109.49777 * 58.58707 * 15 14 12 39 39 H 1.08997 * 109.49318 * 178.65266 * 15 14 12 40 40 H 1.09004 * 109.58447 * 174.42290 * 16 15 14 41 41 H 1.08995 * 109.58657 * 294.70336 * 16 15 14 42 42 H 0.97001 * 119.99866 * 180.02562 * 21 20 18 43 43 H 1.09001 * 109.55730 * 293.77896 * 26 17 16 44 44 H 1.08999 * 109.61521 * 173.35828 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1470 -0.0181 -2.3571 6 8 1.8590 1.1588 -2.4114 7 6 2.6488 -0.7285 -3.5878 8 16 2.7092 0.4371 -4.9765 9 6 3.3284 -0.6127 -6.3201 10 8 3.6851 1.4300 -4.6921 11 8 1.3823 0.8379 -5.2892 12 6 2.0400 -0.7214 1.2492 13 1 3.1300 -0.7220 1.2494 14 6 1.5289 -0.0014 2.4992 15 6 2.0654 -0.7028 3.7492 16 6 1.5533 -2.1463 3.7792 17 7 1.9161 -2.8032 2.5160 18 6 2.6034 -3.9876 2.5178 19 1 3.2559 -4.2320 3.3430 20 6 2.4613 -4.8741 1.4591 21 7 3.3816 -5.7888 1.2386 22 14 0.9639 -4.7687 0.3473 23 1 1.2752 -3.9081 -0.8221 24 1 0.5996 -6.1296 -0.1226 25 1 -0.1735 -4.1849 1.1028 26 6 1.5284 -2.1652 1.2505 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5140 -0.8899 30 1 2.2490 -1.6316 -1.1527 31 1 1.9759 -1.5503 -3.8327 32 1 3.6479 -1.1210 -3.3987 33 1 2.6360 -1.4383 -6.4846 34 1 4.3078 -1.0079 -6.0506 35 1 3.4137 -0.0224 -7.2325 36 1 1.8716 1.0333 2.4881 37 1 0.4391 -0.0228 2.5106 38 1 3.1551 -0.7037 3.7263 39 1 1.7205 -0.1753 4.6385 40 1 2.0110 -2.6791 4.6128 41 1 0.4696 -2.1472 3.8959 42 1 3.2825 -6.4080 0.4986 43 1 0.4423 -2.1682 1.1581 44 1 1.9696 -2.7100 0.4158 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690495196.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:20 Heat of formation + Delta-G solvation = -83.041004 kcal Electronic energy + Delta-G solvation = -26149.175719 eV Core-core repulsion = 22422.840016 eV Total energy + Delta-G solvation = -3726.335702 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -40.15121 -38.40127 -37.13071 -36.14697 -35.40977 -33.28228 -32.06789 -30.83891 -30.34188 -29.56564 -28.37443 -25.40525 -24.27361 -22.69961 -21.04580 -20.35179 -19.18411 -18.94714 -17.73495 -16.98774 -16.84864 -16.50778 -16.01738 -15.79569 -15.23252 -15.19812 -14.53093 -14.16101 -13.91076 -13.70915 -13.59048 -13.54459 -13.38537 -13.27512 -12.92968 -12.53687 -12.23172 -12.21862 -12.18702 -12.12131 -11.85484 -11.53567 -11.35971 -11.10605 -11.04515 -10.83784 -10.66016 -10.56679 -10.20983 -10.19759 -9.88826 -9.77016 -9.57310 -9.10797 -8.73578 -7.06574 -6.06911 -3.42080 -0.35007 2.36698 2.48535 2.88617 3.08084 3.34863 3.37836 3.62413 3.76342 4.35164 4.38016 4.39619 4.45099 4.71921 4.78128 4.91833 5.03554 5.14083 5.17932 5.28752 5.33663 5.46661 5.50276 5.62428 5.76061 5.90836 5.98294 5.99913 6.09434 6.21600 6.28575 6.34914 6.42180 6.50010 6.51734 6.63479 6.66067 6.91126 7.33846 7.85080 7.98268 8.21988 8.83075 9.59912 9.98888 11.09132 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.015300 B = 0.004219 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.636362 B = 6635.179059 C = 7759.967147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.144 3.856 3 H 0.091 0.909 4 N -0.709 5.709 5 C 0.542 3.458 6 O -0.535 6.535 7 C -0.664 4.664 8 S 2.458 3.542 9 C -0.663 4.663 10 O -0.922 6.922 11 O -0.923 6.923 12 C -0.115 4.115 13 H 0.080 0.920 14 C -0.103 4.103 15 C -0.135 4.135 16 C 0.147 3.853 17 N -0.605 5.605 18 C -0.257 4.257 19 H 0.087 0.913 20 C 0.021 3.979 21 N -0.907 5.907 22 Si 0.881 3.119 23 H -0.293 1.293 24 H -0.302 1.302 25 H -0.270 1.270 26 C 0.130 3.870 27 H 0.062 0.938 28 H 0.072 0.928 29 H 0.059 0.941 30 H 0.408 0.592 31 H 0.160 0.840 32 H 0.162 0.838 33 H 0.129 0.871 34 H 0.130 0.870 35 H 0.132 0.868 36 H 0.055 0.945 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.056 0.944 40 H 0.062 0.938 41 H 0.023 0.977 42 H 0.262 0.738 43 H 0.032 0.968 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.683 9.019 -9.741 13.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.040 3.960 3 H 0.109 0.891 4 N -0.361 5.361 5 C 0.326 3.674 6 O -0.413 6.413 7 C -0.791 4.791 8 S 2.634 3.366 9 C -0.812 4.812 10 O -0.919 6.919 11 O -0.920 6.920 12 C -0.136 4.136 13 H 0.099 0.901 14 C -0.141 4.141 15 C -0.174 4.174 16 C 0.021 3.979 17 N -0.328 5.328 18 C -0.385 4.385 19 H 0.104 0.896 20 C -0.177 4.177 21 N -0.550 5.550 22 Si 0.712 3.288 23 H -0.221 1.221 24 H -0.231 1.231 25 H -0.195 1.195 26 C 0.005 3.995 27 H 0.081 0.919 28 H 0.091 0.909 29 H 0.078 0.922 30 H 0.244 0.756 31 H 0.178 0.822 32 H 0.180 0.820 33 H 0.148 0.852 34 H 0.149 0.851 35 H 0.151 0.849 36 H 0.073 0.927 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.075 0.925 40 H 0.081 0.919 41 H 0.041 0.959 42 H 0.072 0.928 43 H 0.050 0.950 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.055 10.538 -9.820 14.550 hybrid contribution -0.382 -1.735 -0.746 1.927 sum -2.438 8.803 -10.566 13.967 Atomic orbital electron populations 1.22307 0.95240 1.02667 1.02544 1.21164 0.94388 0.97140 0.83328 0.89136 1.46156 1.65843 1.14737 1.09347 1.19067 0.77862 0.86621 0.83824 1.90835 1.50757 1.15053 1.84699 1.30931 1.12625 1.19820 1.15768 1.07078 0.75887 0.76577 0.77038 1.30397 1.13548 1.17363 1.19933 1.93593 1.62277 1.52676 1.83393 1.93590 1.36732 1.79002 1.82713 1.21994 1.01502 0.97445 0.92645 0.90132 1.21445 1.00428 0.98013 0.94175 1.21997 1.01156 0.97834 0.96441 1.20960 0.96631 0.91197 0.89131 1.44332 1.66089 1.23037 0.99391 1.18979 1.18633 0.92795 1.08086 0.89577 1.25293 0.97793 0.96321 0.98318 1.69842 1.32777 1.21454 1.30941 0.87016 0.86060 0.75646 0.80104 1.22147 1.23050 1.19516 1.21452 0.97141 0.90762 0.90181 0.91931 0.90938 0.92242 0.75554 0.82249 0.82024 0.85192 0.85106 0.84941 0.92674 0.91943 0.91956 0.92515 0.91916 0.95940 0.92772 0.94996 0.91596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.41 8.79 37.15 0.33 -2.09 16 2 C 0.14 2.17 2.41 -67.93 -0.16 2.01 16 3 H 0.09 1.38 7.58 -51.93 -0.39 0.98 16 4 N -0.71 -10.53 5.00 -53.81 -0.27 -10.80 16 5 C 0.54 7.97 7.81 -10.98 -0.09 7.89 16 6 O -0.54 -9.61 15.29 2.57 0.04 -9.57 16 7 C -0.66 -6.27 6.29 36.01 0.23 -6.04 16 8 S 2.46 25.08 4.60 -107.50 -0.49 24.58 16 9 C -0.66 -3.32 10.62 101.05 1.07 -2.25 16 10 O -0.92 -13.13 17.94 -59.53 -1.07 -14.20 16 11 O -0.92 -13.11 17.95 -59.52 -1.07 -14.18 16 12 C -0.12 -1.87 2.33 -90.50 -0.21 -2.08 16 13 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 14 C -0.10 -1.48 4.77 -26.69 -0.13 -1.61 16 15 C -0.14 -2.07 6.08 -26.61 -0.16 -2.23 16 16 C 0.15 2.72 6.52 -3.71 -0.02 2.70 16 17 N -0.61 -13.47 2.77 -172.32 -0.48 -13.95 16 18 C -0.26 -6.80 10.03 -15.06 -0.15 -6.95 16 19 H 0.09 2.46 8.06 -52.48 -0.42 2.04 16 20 C 0.02 0.58 5.23 -17.43 -0.09 0.49 16 21 N -0.91 -26.33 13.97 55.49 0.78 -25.55 16 22 Si 0.88 20.78 24.35 -169.99 -4.14 16.64 16 23 H -0.29 -6.21 6.62 56.52 0.37 -5.84 16 24 H -0.30 -7.38 7.11 56.52 0.40 -6.98 16 25 H -0.27 -6.39 6.64 56.52 0.38 -6.02 16 26 C 0.13 2.57 2.98 -3.71 -0.01 2.56 16 27 H 0.06 0.93 6.32 -51.93 -0.33 0.60 16 28 H 0.07 0.91 6.46 -51.93 -0.34 0.58 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.41 5.94 6.97 -40.82 -0.28 5.66 16 31 H 0.16 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.16 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.13 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.13 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.13 0.57 8.14 -51.92 -0.42 0.15 16 36 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.86 6.50 -51.93 -0.34 0.53 16 38 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 41 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 43 H 0.03 0.64 5.11 -51.93 -0.27 0.37 16 44 H 0.07 1.39 3.10 -51.93 -0.16 1.22 16 LS Contribution 351.99 15.07 5.30 5.30 Total: -1.00 -37.12 351.99 -7.58 -44.69 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -6.78 Total: 4.63 kcal Atomic # 6 Polarization: -8.20 SS G_CDS: 0.60 Total: -7.60 kcal Atomic # 7 Polarization: -50.33 SS G_CDS: 0.03 Total: -50.30 kcal Atomic # 8 Polarization: -35.85 SS G_CDS: -2.10 Total: -37.95 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -4.14 Total: 16.64 kcal Atomic # 16 Polarization: 25.08 SS G_CDS: -0.49 Total: 24.58 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -37.12 -7.58 -44.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690495196.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.348 kcal (2) G-P(sol) polarization free energy of solvation -37.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds