Wall clock time and date at job start Tue Mar 31 2020 05:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47033 * 2 1 4 4 N 1.46501 * 109.47014 * 240.00317 * 2 1 3 5 5 C 1.34768 * 120.00029 * 84.99543 * 4 2 1 6 6 O 1.21280 * 120.00183 * 0.02562 * 5 4 2 7 7 C 1.50703 * 119.99791 * 179.97438 * 5 4 2 8 8 S 1.81408 * 109.47020 * 180.02562 * 7 5 4 9 9 C 1.81391 * 101.92098 * 180.02562 * 8 7 5 10 10 O 1.42094 * 108.57688 * 294.49071 * 8 7 5 11 11 O 1.42102 * 108.57651 * 65.51600 * 8 7 5 12 12 C 1.52998 * 109.47170 * 120.00313 * 2 1 3 13 13 H 1.09002 * 109.50166 * 59.93458 * 12 2 1 14 14 C 1.53051 * 109.49562 * 299.83618 * 12 2 1 15 15 C 1.53040 * 109.53536 * 178.68712 * 14 12 2 16 16 C 1.52759 * 109.38545 * 61.23641 * 15 14 12 17 17 N 1.46923 * 109.01237 * 305.59084 * 16 15 14 18 18 C 1.36935 * 120.62889 * 233.58434 * 17 16 15 19 19 H 1.07998 * 119.99964 * 152.10883 * 18 17 16 20 20 C 1.38806 * 119.99901 * 332.09815 * 18 17 16 21 21 N 1.31623 * 120.00510 * 335.27507 * 20 18 17 22 22 Si 1.86803 * 120.00033 * 154.99824 * 20 18 17 23 23 H 1.48499 * 109.47244 * 89.99976 * 22 20 18 24 24 H 1.48497 * 109.47129 * 210.00254 * 22 20 18 25 25 H 1.48505 * 109.46806 * 330.00107 * 22 20 18 26 26 C 1.46923 * 118.73676 * 53.30433 * 17 16 15 27 27 H 1.08997 * 109.47152 * 299.99256 * 1 2 3 28 28 H 1.08994 * 109.47229 * 60.00129 * 1 2 3 29 29 H 1.09010 * 109.46915 * 180.02562 * 1 2 3 30 30 H 0.96998 * 119.99853 * 264.99813 * 4 2 1 31 31 H 1.08996 * 109.47182 * 300.00154 * 7 5 4 32 32 H 1.08996 * 109.47196 * 60.00626 * 7 5 4 33 33 H 1.09001 * 109.47261 * 59.99927 * 9 8 7 34 34 H 1.09001 * 109.47611 * 179.97438 * 9 8 7 35 35 H 1.09003 * 109.47718 * 300.00183 * 9 8 7 36 36 H 1.08990 * 109.45897 * 298.70490 * 14 12 2 37 37 H 1.09000 * 109.45851 * 58.66599 * 14 12 2 38 38 H 1.08998 * 109.49326 * 181.31985 * 15 14 12 39 39 H 1.09008 * 109.49676 * 301.38061 * 15 14 12 40 40 H 1.09000 * 109.50763 * 185.70096 * 16 15 14 41 41 H 1.09006 * 109.42391 * 65.42647 * 16 15 14 42 42 H 0.97000 * 119.99468 * 353.97254 * 21 20 18 43 43 H 1.09006 * 109.58528 * 66.43357 * 26 17 16 44 44 H 1.09002 * 109.58420 * 186.71427 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1470 -0.0182 -2.3571 6 8 1.8589 1.1586 -2.4114 7 6 2.6498 -0.7285 -3.5875 8 16 2.7113 0.4373 -4.9760 9 6 3.3301 -0.6125 -6.3196 10 8 1.3846 0.8381 -5.2896 11 8 3.6870 1.4303 -4.6906 12 6 2.0400 -0.7213 1.2492 13 1 1.6760 -1.7487 1.2502 14 6 1.5336 0.0021 2.4993 15 6 2.0160 -0.7375 3.7492 16 6 3.5433 -0.7418 3.7780 17 7 4.0443 -1.3005 2.5149 18 6 4.9301 -2.3448 2.5166 19 1 4.9568 -3.0316 1.6837 20 6 5.7939 -2.5203 3.5889 21 7 6.1263 -1.4928 4.3414 22 14 6.4786 -4.2163 3.9688 23 1 7.7523 -4.4126 3.2310 24 1 6.7285 -4.3338 5.4279 25 1 5.4991 -5.2508 3.5495 26 6 3.5719 -0.7216 1.2498 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0278 0.0005 30 1 2.2491 -1.6317 -1.1527 31 1 3.6492 -1.1202 -3.3979 32 1 1.9777 -1.5507 -3.8326 33 1 2.6374 -1.4378 -6.4843 34 1 3.4153 -0.0224 -7.2321 35 1 4.3093 -1.0085 -6.0499 36 1 1.9182 1.0218 2.5096 37 1 0.4439 0.0252 2.4889 38 1 1.6355 -0.2352 4.6386 39 1 1.6517 -1.7647 3.7275 40 1 3.8900 -1.3532 4.6111 41 1 3.9065 0.2793 3.8955 42 1 5.8391 -0.5993 4.0964 43 1 3.9376 0.3011 1.1569 44 1 3.9397 -1.3184 0.4151 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690495197.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:23 Heat of formation + Delta-G solvation = -93.086937 kcal Electronic energy + Delta-G solvation = -25673.183095 eV Core-core repulsion = 21946.411768 eV Total energy + Delta-G solvation = -3726.771327 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.13987 -38.19070 -37.16990 -36.18409 -35.55618 -33.36220 -31.81865 -30.55790 -30.28542 -29.51847 -28.41369 -25.18515 -23.58038 -22.20327 -21.11732 -20.54445 -19.28016 -19.01725 -17.71573 -17.40384 -16.97579 -16.55051 -16.10032 -15.65454 -15.22567 -14.65241 -14.36368 -13.93590 -13.77919 -13.69648 -13.61094 -13.59163 -13.45285 -13.17684 -12.87952 -12.56441 -12.40301 -12.22473 -12.15778 -11.92815 -11.69202 -11.40974 -11.18515 -11.08301 -10.97712 -10.71787 -10.39140 -10.37146 -10.26113 -10.09717 -9.94021 -9.81001 -9.34816 -9.11905 -8.40485 -6.92090 -6.10764 -3.27617 -0.39887 2.31921 2.44237 2.82281 3.44949 3.49220 3.58022 3.64235 3.70987 4.28929 4.32199 4.39863 4.52710 4.72042 4.79954 4.85300 5.13018 5.23182 5.25810 5.28116 5.42166 5.45889 5.62816 5.67309 5.87880 5.92043 5.99841 6.13498 6.16049 6.28807 6.35942 6.45142 6.48533 6.63974 6.67501 6.78173 7.07536 7.18418 7.27299 7.93172 7.93984 8.53491 9.07749 9.80442 10.25758 11.17574 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.016089 B = 0.003338 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.893108 B = 8387.069477 C = 9575.332953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.144 3.856 3 H 0.090 0.910 4 N -0.706 5.706 5 C 0.541 3.459 6 O -0.533 6.533 7 C -0.662 4.662 8 S 2.458 3.542 9 C -0.664 4.664 10 O -0.924 6.924 11 O -0.920 6.920 12 C -0.111 4.111 13 H 0.073 0.927 14 C -0.102 4.102 15 C -0.136 4.136 16 C 0.148 3.852 17 N -0.598 5.598 18 C -0.352 4.352 19 H 0.054 0.946 20 C -0.023 4.023 21 N -0.915 5.915 22 Si 1.065 2.935 23 H -0.294 1.294 24 H -0.286 1.286 25 H -0.293 1.293 26 C 0.156 3.844 27 H 0.071 0.929 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.405 0.595 31 H 0.161 0.839 32 H 0.158 0.842 33 H 0.128 0.872 34 H 0.132 0.868 35 H 0.130 0.870 36 H 0.057 0.943 37 H 0.054 0.946 38 H 0.052 0.948 39 H 0.057 0.943 40 H 0.078 0.922 41 H 0.016 0.984 42 H 0.270 0.730 43 H 0.016 0.984 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.603 -1.995 -16.566 19.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.039 3.961 3 H 0.108 0.892 4 N -0.356 5.356 5 C 0.325 3.675 6 O -0.410 6.410 7 C -0.789 4.789 8 S 2.634 3.366 9 C -0.813 4.813 10 O -0.921 6.921 11 O -0.917 6.917 12 C -0.132 4.132 13 H 0.091 0.909 14 C -0.140 4.140 15 C -0.175 4.175 16 C 0.022 3.978 17 N -0.322 5.322 18 C -0.481 4.481 19 H 0.072 0.928 20 C -0.226 4.226 21 N -0.555 5.555 22 Si 0.895 3.105 23 H -0.222 1.222 24 H -0.211 1.211 25 H -0.220 1.220 26 C 0.029 3.971 27 H 0.090 0.910 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.240 0.760 31 H 0.179 0.821 32 H 0.176 0.824 33 H 0.147 0.853 34 H 0.150 0.850 35 H 0.149 0.851 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.076 0.924 40 H 0.097 0.903 41 H 0.034 0.966 42 H 0.081 0.919 43 H 0.034 0.966 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.070 -1.175 -15.502 17.999 hybrid contribution -0.509 -0.733 -1.155 1.460 sum -9.579 -1.908 -16.658 19.310 Atomic orbital electron populations 1.22219 0.95269 1.02067 1.02587 1.21181 0.93842 0.97744 0.83283 0.89154 1.45963 1.66055 1.14328 1.09252 1.19068 0.77929 0.86687 0.83819 1.90856 1.50475 1.15071 1.84641 1.30902 1.12438 1.19720 1.15833 1.07108 0.75890 0.76614 0.77029 1.30405 1.13476 1.17328 1.20059 1.93588 1.36812 1.78978 1.82731 1.93612 1.62247 1.52544 1.83281 1.21972 0.99446 0.99301 0.92461 0.90859 1.21448 0.99088 0.99016 0.94426 1.21983 0.99699 0.99762 0.96086 1.20884 0.89751 0.96684 0.90463 1.44087 1.50167 1.38699 0.99236 1.19929 1.14770 1.03999 1.09370 0.92814 1.25833 0.95122 1.04734 0.96862 1.70744 1.42578 0.99684 1.42450 0.83544 0.75530 0.74944 0.76481 1.22184 1.21135 1.21959 1.20867 0.89932 0.96265 0.89992 0.91025 0.92293 0.92544 0.76031 0.82092 0.82378 0.85302 0.84952 0.85135 0.92456 0.92721 0.92899 0.92435 0.90316 0.96638 0.91896 0.96582 0.92980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.99 9.14 37.16 0.34 -1.65 16 2 C 0.14 2.01 2.16 -67.93 -0.15 1.86 16 3 H 0.09 1.44 7.58 -51.93 -0.39 1.05 16 4 N -0.71 -8.68 4.48 -53.81 -0.24 -8.92 16 5 C 0.54 7.09 7.81 -10.99 -0.09 7.00 16 6 O -0.53 -9.23 15.29 2.56 0.04 -9.19 16 7 C -0.66 -4.91 6.29 36.01 0.23 -4.69 16 8 S 2.46 22.52 4.60 -107.50 -0.49 22.03 16 9 C -0.66 -2.59 10.62 101.05 1.07 -1.52 16 10 O -0.92 -12.13 17.95 -59.52 -1.07 -13.20 16 11 O -0.92 -12.83 17.95 -59.53 -1.07 -13.90 16 12 C -0.11 -1.75 1.97 -90.50 -0.18 -1.93 16 13 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 14 C -0.10 -1.60 4.86 -26.68 -0.13 -1.73 16 15 C -0.14 -2.46 6.06 -26.83 -0.16 -2.62 16 16 C 0.15 3.38 4.66 -3.93 -0.02 3.36 16 17 N -0.60 -14.46 2.86 -172.59 -0.49 -14.96 16 18 C -0.35 -9.49 9.49 -15.06 -0.14 -9.63 16 19 H 0.05 1.44 7.94 -52.49 -0.42 1.02 16 20 C -0.02 -0.64 4.69 -17.43 -0.08 -0.73 16 21 N -0.91 -27.03 12.40 55.49 0.69 -26.34 16 22 Si 1.07 24.57 29.99 -169.99 -5.10 19.47 16 23 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 26 C 0.16 3.12 5.55 -3.71 -0.02 3.10 16 27 H 0.07 0.82 6.40 -51.93 -0.33 0.48 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 30 H 0.40 4.05 8.42 -40.82 -0.34 3.70 16 31 H 0.16 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.16 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.13 0.21 8.14 -51.92 -0.42 -0.21 16 34 H 0.13 0.46 8.14 -51.92 -0.42 0.04 16 35 H 0.13 0.28 8.14 -51.92 -0.42 -0.14 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.05 0.73 6.36 -51.93 -0.33 0.40 16 38 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.06 1.06 8.14 -51.92 -0.42 0.64 16 40 H 0.08 2.03 6.30 -51.93 -0.33 1.70 16 41 H 0.02 0.37 7.87 -51.93 -0.41 -0.04 16 42 H 0.27 8.08 6.71 -40.82 -0.27 7.81 16 43 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 44 H 0.05 1.01 7.44 -51.93 -0.39 0.62 16 LS Contribution 362.87 15.07 5.47 5.47 Total: -1.00 -38.92 362.87 -8.68 -47.59 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -7.08 Total: 1.11 kcal Atomic # 6 Polarization: -9.83 SS G_CDS: 0.67 Total: -9.16 kcal Atomic # 7 Polarization: -50.17 SS G_CDS: -0.05 Total: -50.21 kcal Atomic # 8 Polarization: -34.20 SS G_CDS: -2.10 Total: -36.29 kcal Atomic # 14 Polarization: 24.57 SS G_CDS: -5.10 Total: 19.47 kcal Atomic # 16 Polarization: 22.52 SS G_CDS: -0.49 Total: 22.03 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -38.92 -8.68 -47.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690495197.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.493 kcal (2) G-P(sol) polarization free energy of solvation -38.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds