Wall clock time and date at job start Tue Mar 31 2020 05:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08995 * 109.46917 * 2 1 4 4 C 1.53001 * 109.47150 * 119.99882 * 2 1 3 5 5 C 1.53000 * 109.46873 * 184.99805 * 4 2 1 6 6 N 1.46506 * 109.46755 * 180.02562 * 5 4 2 7 7 C 1.34772 * 119.99878 * 180.02562 * 6 5 4 8 8 O 1.21283 * 119.99743 * 359.97438 * 7 6 5 9 9 C 1.50697 * 119.99976 * 180.02562 * 7 6 5 10 10 C 1.52998 * 110.28303 * 302.11115 * 9 7 6 11 11 C 1.54187 * 110.42847 * 64.24369 * 9 7 6 12 12 C 1.53879 * 108.69333 * 146.80867 * 11 9 7 13 13 C 1.55051 * 106.66190 * 312.88667 * 12 11 9 14 14 S 1.82917 * 110.31815 * 179.97438 * 9 7 6 15 15 O 1.42112 * 109.35285 * 125.47122 * 14 9 7 16 16 O 1.42098 * 109.35652 * 352.27083 * 14 9 7 17 17 N 1.46501 * 109.46742 * 240.00256 * 2 1 3 18 18 C 1.36930 * 120.00516 * 85.00204 * 17 2 1 19 19 H 1.08007 * 119.99927 * 359.97438 * 18 17 2 20 20 C 1.38811 * 120.00365 * 179.97438 * 18 17 2 21 21 N 1.31619 * 120.00275 * 179.97438 * 20 18 17 22 22 Si 1.86803 * 119.99917 * 0.02562 * 20 18 17 23 23 H 1.48494 * 109.47300 * 89.99833 * 22 20 18 24 24 H 1.48501 * 109.46773 * 210.00223 * 22 20 18 25 25 H 1.48499 * 109.46745 * 329.99649 * 22 20 18 26 26 H 1.09001 * 109.46794 * 300.00421 * 1 2 3 27 27 H 1.08999 * 109.47240 * 59.99784 * 1 2 3 28 28 H 1.08995 * 109.46917 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46580 * 65.00059 * 4 2 1 30 30 H 1.08998 * 109.47384 * 305.00083 * 4 2 1 31 31 H 1.08990 * 109.46897 * 60.00556 * 5 4 2 32 32 H 1.09004 * 109.47157 * 299.99895 * 5 4 2 33 33 H 0.97001 * 120.00057 * 0.02562 * 6 5 4 34 34 H 1.09001 * 109.47196 * 297.88696 * 10 9 7 35 35 H 1.08999 * 109.47164 * 57.88775 * 10 9 7 36 36 H 1.09000 * 109.47637 * 177.88896 * 10 9 7 37 37 H 1.08999 * 109.61726 * 26.97847 * 11 9 7 38 38 H 1.09008 * 109.69172 * 266.67568 * 11 9 7 39 39 H 1.09002 * 110.02983 * 193.57182 * 12 11 9 40 40 H 1.09000 * 110.02705 * 72.20353 * 12 11 9 41 41 H 1.08996 * 110.78938 * 160.67598 * 13 12 11 42 42 H 1.08995 * 110.78952 * 283.95063 * 13 12 11 43 43 H 0.97009 * 119.99448 * 264.99484 * 17 2 1 44 44 H 0.96998 * 120.00112 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5649 -0.6133 1.3136 6 7 4.0533 -1.3044 2.5095 7 6 5.3741 -1.3399 2.7751 8 8 6.1584 -0.8000 2.0239 9 6 5.8765 -2.0513 4.0049 10 6 5.2365 -1.4560 5.2607 11 6 5.5738 -3.5604 3.9151 12 6 6.7038 -4.3328 4.6183 13 6 8.0385 -3.7370 4.1009 14 16 7.6993 -1.9363 4.1050 15 8 8.0684 -1.3908 5.3643 16 8 8.2014 -1.3599 2.9072 17 7 2.0183 -0.6906 -1.1962 18 6 2.1491 -0.0075 -2.3758 19 1 1.8919 1.0404 -2.4244 20 6 2.6122 -0.6617 -3.5091 21 7 2.7375 -0.0053 -4.6430 22 14 3.0564 -2.4743 -3.4252 23 1 1.8593 -3.2926 -3.7451 24 1 4.1322 -2.7661 -4.4064 25 1 3.5309 -2.8048 -2.0575 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 1.7517 -1.7715 1.2055 30 1 1.6055 -0.2617 2.1370 31 1 3.8532 0.4369 1.3573 32 1 3.9995 -1.0728 0.4259 33 1 3.4260 -1.7365 3.1102 34 1 5.5219 -0.4080 5.3521 35 1 4.1517 -1.5319 5.1864 36 1 5.5798 -2.0039 6.1382 37 1 5.5202 -3.8613 2.8688 38 1 4.6238 -3.7743 4.4049 39 1 6.6452 -5.3917 4.3663 40 1 6.6299 -4.2016 5.6978 41 1 8.8579 -3.9780 4.7779 42 1 8.2549 -4.0903 3.0928 43 1 2.2490 -1.6318 -1.1526 44 1 3.0608 -0.4626 -5.4350 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690868367.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:12 Heat of formation + Delta-G solvation = -95.198249 kcal Electronic energy + Delta-G solvation = -25682.682934 eV Core-core repulsion = 21955.820054 eV Total energy + Delta-G solvation = -3726.862880 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -40.18096 -37.44181 -37.05262 -36.60406 -36.02942 -34.57005 -32.74369 -32.11040 -29.78555 -28.34726 -27.39305 -25.21559 -23.70893 -22.66685 -22.04648 -20.77303 -19.98002 -18.92430 -17.87245 -17.47541 -17.03112 -16.34708 -15.81612 -15.64810 -15.37946 -14.99974 -14.66899 -14.30238 -14.12840 -14.01429 -13.69707 -13.37029 -13.16552 -13.01081 -12.72947 -12.55923 -12.35780 -12.32681 -12.20923 -12.09720 -11.98832 -11.92395 -11.49238 -11.26479 -11.09737 -10.97558 -10.81184 -10.68717 -10.52608 -10.44189 -10.05363 -9.75031 -9.57260 -9.03941 -8.92416 -7.27324 -5.75142 -3.11080 -0.28361 2.25131 2.40479 2.86814 3.33973 3.38073 3.39350 3.46650 3.71851 3.93372 4.08466 4.15364 4.27645 4.43161 4.52627 4.60362 4.96619 5.01938 5.04248 5.10001 5.13437 5.15914 5.24604 5.33085 5.40097 5.44037 5.56590 5.58568 5.59922 5.90951 6.03377 6.18475 6.22071 6.30957 6.44137 6.48638 6.75283 6.94575 7.35454 8.00362 8.08064 8.43649 9.21572 9.93986 10.12759 11.43359 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017335 B = 0.003449 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.833663 B = 8117.220827 C = 8749.404177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.179 3.821 3 H 0.059 0.941 4 C -0.135 4.135 5 C 0.118 3.882 6 N -0.717 5.717 7 C 0.530 3.470 8 O -0.493 6.493 9 C -0.564 4.564 10 C -0.120 4.120 11 C -0.106 4.106 12 C -0.117 4.117 13 C -0.598 4.598 14 S 2.408 3.592 15 O -0.930 6.930 16 O -0.887 6.887 17 N -0.748 5.748 18 C -0.243 4.243 19 H 0.091 0.909 20 C 0.006 3.994 21 N -0.933 5.933 22 Si 0.883 3.117 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.278 1.278 26 H 0.039 0.961 27 H 0.059 0.941 28 H 0.044 0.956 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.397 0.603 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.089 0.911 41 H 0.138 0.862 42 H 0.140 0.860 43 H 0.360 0.640 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.127 -10.656 25.546 27.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.070 3.930 3 H 0.077 0.923 4 C -0.174 4.174 5 C -0.005 4.005 6 N -0.369 5.369 7 C 0.312 3.688 8 O -0.366 6.366 9 C -0.654 4.654 10 C -0.178 4.178 11 C -0.145 4.145 12 C -0.155 4.155 13 C -0.727 4.727 14 S 2.586 3.414 15 O -0.927 6.927 16 O -0.883 6.883 17 N -0.392 5.392 18 C -0.373 4.373 19 H 0.108 0.892 20 C -0.190 4.190 21 N -0.581 5.581 22 Si 0.714 3.286 23 H -0.212 1.212 24 H -0.217 1.217 25 H -0.204 1.204 26 H 0.058 0.942 27 H 0.078 0.922 28 H 0.063 0.937 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.101 0.899 33 H 0.231 0.769 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.101 0.899 37 H 0.108 0.892 38 H 0.118 0.882 39 H 0.118 0.882 40 H 0.107 0.893 41 H 0.156 0.844 42 H 0.158 0.842 43 H 0.193 0.807 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.298 -9.267 24.816 27.014 hybrid contribution -0.620 -2.337 0.127 2.421 sum 4.677 -11.604 24.943 27.904 Atomic orbital electron populations 1.22392 0.98572 1.00826 1.00566 1.20125 0.92084 0.95927 0.84911 0.92335 1.22111 0.93800 1.01711 0.99782 1.21561 0.94453 0.97751 0.86714 1.45975 1.06575 1.56786 1.27567 1.19139 0.83712 0.81031 0.84936 1.91050 1.54061 1.43760 1.47752 1.30536 1.27838 1.03978 1.03074 1.21537 1.01799 1.01874 0.92555 1.22087 1.01118 0.87413 1.03835 1.22172 0.89662 1.02433 1.01245 1.30761 1.05804 1.24939 1.11185 1.09052 0.77611 0.78984 0.75763 1.93605 1.79887 1.76076 1.43156 1.93739 1.75157 1.73749 1.45702 1.42819 1.79706 1.09399 1.07228 1.19059 1.37049 0.95633 0.85554 0.89155 1.24654 1.01336 0.97381 0.95592 1.69693 1.52603 1.35545 1.00262 0.86572 0.78008 0.87006 0.77039 1.21249 1.21737 1.20431 0.94232 0.92181 0.93662 0.91736 0.91378 0.91010 0.89912 0.76903 0.90678 0.90280 0.89916 0.89167 0.88166 0.88155 0.89275 0.84387 0.84169 0.80732 0.93064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.64 9.49 37.16 0.35 -2.29 16 2 C 0.18 3.18 2.89 -67.93 -0.20 2.99 16 3 H 0.06 1.10 8.08 -51.93 -0.42 0.68 16 4 C -0.14 -1.81 4.87 -26.73 -0.13 -1.94 16 5 C 0.12 1.77 5.56 -4.04 -0.02 1.74 16 6 N -0.72 -8.29 5.42 -60.29 -0.33 -8.62 16 7 C 0.53 7.07 6.41 -10.99 -0.07 7.00 16 8 O -0.49 -9.28 13.98 -18.57 -0.26 -9.54 16 9 C -0.56 -5.00 0.93 -91.15 -0.08 -5.08 16 10 C -0.12 -0.79 7.77 37.16 0.29 -0.50 16 11 C -0.11 -0.59 5.45 -25.65 -0.14 -0.73 16 12 C -0.12 -0.49 6.47 -25.19 -0.16 -0.65 16 13 C -0.60 -3.65 7.30 38.24 0.28 -3.37 16 14 S 2.41 25.83 5.77 -107.50 -0.62 25.21 16 15 O -0.93 -11.50 17.26 -57.71 -1.00 -12.49 16 16 O -0.89 -14.42 15.27 -67.18 -1.03 -15.45 16 17 N -0.75 -16.97 4.38 -53.42 -0.23 -17.20 16 18 C -0.24 -6.76 10.41 -15.06 -0.16 -6.92 16 19 H 0.09 2.70 8.06 -52.48 -0.42 2.28 16 20 C 0.01 0.18 5.50 -17.43 -0.10 0.09 16 21 N -0.93 -29.53 13.97 55.49 0.78 -28.75 16 22 Si 0.88 22.24 27.74 -169.99 -4.71 17.53 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 24 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 25 H -0.28 -6.57 6.52 56.52 0.37 -6.21 16 26 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.08 1.54 7.75 -51.93 -0.40 1.14 16 33 H 0.40 3.08 7.79 -40.82 -0.32 2.76 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.08 0.36 7.46 -51.93 -0.39 -0.03 16 36 H 0.08 0.39 8.13 -51.93 -0.42 -0.03 16 37 H 0.09 0.58 7.85 -51.93 -0.41 0.17 16 38 H 0.10 0.32 7.88 -51.92 -0.41 -0.09 16 39 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 41 H 0.14 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.14 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.36 8.05 5.66 -40.82 -0.23 7.82 16 44 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 LS Contribution 364.10 15.07 5.49 5.49 Total: -1.00 -39.14 364.10 -9.29 -48.44 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -7.24 Total: 5.05 kcal Atomic # 6 Polarization: -9.53 SS G_CDS: -0.14 Total: -9.66 kcal Atomic # 7 Polarization: -54.79 SS G_CDS: 0.21 Total: -54.57 kcal Atomic # 8 Polarization: -35.20 SS G_CDS: -2.28 Total: -37.48 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.71 Total: 17.53 kcal Atomic # 16 Polarization: 25.83 SS G_CDS: -0.62 Total: 25.21 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -39.14 -9.29 -48.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690868367.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.763 kcal (2) G-P(sol) polarization free energy of solvation -39.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds