Wall clock time and date at job start Tue Mar 31 2020 05:24:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47521 * 2 1 4 4 C 1.53003 * 109.47332 * 120.00166 * 2 1 3 5 5 C 1.53002 * 109.47269 * 185.00423 * 4 2 1 6 6 N 1.46498 * 109.47272 * 180.02562 * 5 4 2 7 7 C 1.34773 * 120.00043 * 179.97438 * 6 5 4 8 8 O 1.21274 * 120.00359 * 359.97438 * 7 6 5 9 9 C 1.50711 * 119.99937 * 179.97438 * 7 6 5 10 10 C 1.52995 * 110.28226 * 57.88390 * 9 7 6 11 11 C 1.54171 * 110.31618 * 295.66092 * 9 7 6 12 12 C 1.53873 * 108.69984 * 213.18930 * 11 9 7 13 13 C 1.55043 * 106.62580 * 47.18343 * 12 11 9 14 14 S 1.82916 * 110.31683 * 180.02562 * 9 7 6 15 15 O 1.42100 * 109.34891 * 234.42460 * 14 9 7 16 16 O 1.42093 * 109.35397 * 7.49294 * 14 9 7 17 17 N 1.46505 * 109.47130 * 239.99914 * 2 1 3 18 18 C 1.36931 * 119.99788 * 84.99932 * 17 2 1 19 19 H 1.08002 * 120.00438 * 0.02562 * 18 17 2 20 20 C 1.38817 * 119.99680 * 179.72358 * 18 17 2 21 21 N 1.31614 * 119.99888 * 0.27479 * 20 18 17 22 22 Si 1.86803 * 119.99862 * 180.27671 * 20 18 17 23 23 H 1.48496 * 109.47141 * 59.99751 * 22 20 18 24 24 H 1.48490 * 109.47071 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.46993 * 300.00028 * 22 20 18 26 26 H 1.08998 * 109.47099 * 60.00123 * 1 2 3 27 27 H 1.09002 * 109.46807 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47019 * 299.99650 * 1 2 3 29 29 H 1.09000 * 109.46805 * 304.99883 * 4 2 1 30 30 H 1.08992 * 109.47408 * 64.99820 * 4 2 1 31 31 H 1.09000 * 109.46766 * 299.99484 * 5 4 2 32 32 H 1.08992 * 109.47398 * 59.99391 * 5 4 2 33 33 H 0.97004 * 119.99849 * 359.97438 * 6 5 4 34 34 H 1.08998 * 109.47356 * 60.69998 * 10 9 7 35 35 H 1.09002 * 109.47303 * 180.70429 * 10 9 7 36 36 H 1.09009 * 109.47149 * 300.70146 * 10 9 7 37 37 H 1.09003 * 109.64626 * 333.04399 * 11 9 7 38 38 H 1.09001 * 109.64450 * 93.33566 * 11 9 7 39 39 H 1.08997 * 110.02647 * 287.88543 * 12 11 9 40 40 H 1.09003 * 110.02415 * 166.47148 * 12 11 9 41 41 H 1.09002 * 110.78729 * 199.29636 * 13 12 11 42 42 H 1.08997 * 110.95555 * 75.90760 * 13 12 11 43 43 H 0.97000 * 119.99792 * 264.99726 * 17 2 1 44 44 H 0.97005 * 119.99715 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.6132 1.3137 6 7 4.0533 -1.3044 2.5095 7 6 5.3742 -1.3406 2.7746 8 8 6.1586 -0.8015 2.0231 9 6 5.8766 -2.0511 4.0051 10 6 5.4361 -3.5162 3.9885 11 6 5.3604 -1.3490 5.2769 12 6 6.4273 -1.4767 6.3784 13 6 7.7825 -1.0936 5.7299 14 16 7.6994 -1.9363 4.1051 15 8 8.2476 -3.2419 4.2235 16 8 8.1722 -1.0593 3.0920 17 7 2.0183 -0.6907 -1.1962 18 6 2.1491 -0.0075 -2.3757 19 1 1.8926 1.0405 -2.4242 20 6 2.6172 -0.6605 -3.5077 21 7 2.9303 -1.9375 -3.4485 22 14 2.8029 0.2732 -5.1149 23 1 3.7570 1.3957 -4.9279 24 1 3.3164 -0.6440 -6.1637 25 1 1.4824 0.8102 -5.5308 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.6054 -0.2618 2.1370 30 1 1.7517 -1.7715 1.2056 31 1 3.9995 -1.0728 0.4260 32 1 3.8532 0.4370 1.3573 33 1 3.4259 -1.7359 3.1105 34 1 5.8512 -4.0105 3.1102 35 1 5.7954 -4.0139 4.8893 36 1 4.3478 -3.5681 3.9543 37 1 5.1766 -0.2957 5.0650 38 1 4.4350 -1.8214 5.6064 39 1 6.4652 -2.5027 6.7442 40 1 6.2002 -0.7957 7.1986 41 1 8.6155 -1.4741 6.3211 42 1 7.8621 -0.0141 5.6020 43 1 2.2490 -1.6318 -1.1526 44 1 3.2571 -2.3939 -4.2397 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690868368.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:15 Heat of formation + Delta-G solvation = -99.093218 kcal Electronic energy + Delta-G solvation = -25552.327975 eV Core-core repulsion = 21825.296197 eV Total energy + Delta-G solvation = -3727.031779 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -40.07864 -37.37376 -36.91708 -36.47463 -35.95998 -34.42807 -32.68403 -32.07283 -29.23373 -28.06920 -27.33939 -25.13436 -23.83367 -22.73469 -21.98636 -20.67773 -19.82394 -18.81329 -17.71323 -17.17448 -16.95935 -16.27484 -15.74528 -15.48493 -15.28025 -14.86354 -14.60140 -14.26611 -14.12255 -13.85954 -13.48774 -13.33970 -13.20604 -12.92218 -12.64624 -12.48972 -12.29187 -12.25341 -12.06404 -12.01913 -11.87237 -11.55922 -11.44776 -11.10027 -10.95208 -10.88913 -10.73104 -10.63723 -10.45925 -10.30293 -10.01569 -9.66122 -9.60650 -8.93360 -8.84311 -6.93967 -5.72873 -3.01856 -0.22444 2.31862 2.50771 2.97381 3.40914 3.48114 3.52962 3.53570 3.77746 3.99687 4.13546 4.21190 4.33513 4.48555 4.60055 4.63204 5.00834 5.06330 5.14573 5.23153 5.25137 5.29092 5.36705 5.37226 5.43331 5.56324 5.66125 5.71982 5.85976 6.03750 6.15648 6.31129 6.37363 6.43747 6.61560 6.68013 6.85048 7.04803 7.47376 7.73502 8.19218 8.45351 9.56788 10.12732 10.47193 11.49669 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018839 B = 0.003124 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.932574 B = 8960.437433 C = 9806.164210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.174 3.826 3 H 0.049 0.951 4 C -0.132 4.132 5 C 0.119 3.881 6 N -0.716 5.716 7 C 0.531 3.469 8 O -0.494 6.494 9 C -0.563 4.563 10 C -0.121 4.121 11 C -0.105 4.105 12 C -0.117 4.117 13 C -0.598 4.598 14 S 2.408 3.592 15 O -0.930 6.930 16 O -0.887 6.887 17 N -0.724 5.724 18 C -0.240 4.240 19 H 0.069 0.931 20 C -0.011 4.011 21 N -0.932 5.932 22 Si 0.906 3.094 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.287 1.287 26 H 0.054 0.946 27 H 0.045 0.955 28 H 0.035 0.965 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.088 0.912 32 H 0.067 0.933 33 H 0.396 0.604 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.099 0.901 39 H 0.089 0.911 40 H 0.099 0.901 41 H 0.137 0.863 42 H 0.139 0.861 43 H 0.383 0.617 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.234 -0.891 26.046 26.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.064 3.936 3 H 0.067 0.933 4 C -0.171 4.171 5 C -0.003 4.003 6 N -0.367 5.367 7 C 0.312 3.688 8 O -0.367 6.367 9 C -0.653 4.653 10 C -0.179 4.179 11 C -0.143 4.143 12 C -0.155 4.155 13 C -0.728 4.728 14 S 2.586 3.414 15 O -0.927 6.927 16 O -0.884 6.884 17 N -0.366 5.366 18 C -0.372 4.372 19 H 0.087 0.913 20 C -0.207 4.207 21 N -0.580 5.580 22 Si 0.737 3.263 23 H -0.212 1.212 24 H -0.217 1.217 25 H -0.214 1.214 26 H 0.073 0.927 27 H 0.065 0.935 28 H 0.054 0.946 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.106 0.894 32 H 0.085 0.915 33 H 0.230 0.770 34 H 0.095 0.905 35 H 0.100 0.900 36 H 0.098 0.902 37 H 0.107 0.893 38 H 0.118 0.882 39 H 0.107 0.893 40 H 0.118 0.882 41 H 0.156 0.844 42 H 0.157 0.843 43 H 0.217 0.783 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.519 -0.663 24.686 25.105 hybrid contribution -0.898 0.179 -0.048 0.917 sum 3.620 -0.483 24.638 24.907 Atomic orbital electron populations 1.22426 0.99149 1.00808 0.99957 1.20147 0.91875 0.95593 0.86000 0.93273 1.22062 0.93747 1.01842 0.99407 1.21553 0.94509 0.97329 0.86910 1.45970 1.06497 1.56724 1.27534 1.19116 0.83759 0.80903 0.85029 1.91042 1.54092 1.43955 1.47654 1.30528 1.27924 1.05003 1.01885 1.21548 1.03374 0.88439 1.04550 1.22069 1.00517 1.01961 0.89785 1.22167 0.90210 1.04094 0.99023 1.30758 1.05525 1.14297 1.22180 1.09059 0.77408 0.76675 0.78268 1.93605 1.74338 1.37866 1.86852 1.93732 1.76146 1.65686 1.52826 1.42442 1.78133 1.10645 1.05343 1.19168 1.36713 0.93865 0.87416 0.91264 1.24723 1.01979 0.95965 0.98080 1.69639 1.50638 1.08702 1.29070 0.86291 0.77703 0.78716 0.83615 1.21201 1.21739 1.21383 0.92690 0.93548 0.94623 0.91943 0.91579 0.89395 0.91477 0.76989 0.90521 0.89964 0.90206 0.89281 0.88205 0.89267 0.88236 0.84439 0.84280 0.78286 0.93476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.78 9.49 37.16 0.35 -2.43 16 2 C 0.17 3.27 2.89 -67.93 -0.20 3.07 16 3 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 4 C -0.13 -1.91 4.87 -26.73 -0.13 -2.04 16 5 C 0.12 1.91 5.56 -4.04 -0.02 1.89 16 6 N -0.72 -8.90 5.42 -60.30 -0.33 -9.23 16 7 C 0.53 7.47 6.40 -10.98 -0.07 7.40 16 8 O -0.49 -9.67 13.97 -18.56 -0.26 -9.93 16 9 C -0.56 -5.35 0.93 -91.16 -0.08 -5.43 16 10 C -0.12 -0.96 7.78 37.15 0.29 -0.67 16 11 C -0.10 -0.57 5.44 -25.66 -0.14 -0.71 16 12 C -0.12 -0.48 6.48 -25.20 -0.16 -0.64 16 13 C -0.60 -3.59 7.30 38.24 0.28 -3.31 16 14 S 2.41 27.07 5.77 -107.50 -0.62 26.45 16 15 O -0.93 -12.30 17.24 -57.73 -1.00 -13.30 16 16 O -0.89 -14.79 15.27 -67.18 -1.03 -15.82 16 17 N -0.72 -17.62 4.57 -53.42 -0.24 -17.86 16 18 C -0.24 -6.65 9.93 -15.06 -0.15 -6.80 16 19 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 20 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 21 N -0.93 -28.40 13.06 55.49 0.72 -27.68 16 22 Si 0.91 22.80 29.55 -169.99 -5.02 17.78 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 24 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 26 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.09 1.80 7.75 -51.93 -0.40 1.39 16 32 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.40 3.45 7.81 -40.82 -0.32 3.13 16 34 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.08 0.48 8.10 -51.93 -0.42 0.06 16 36 H 0.08 0.48 7.50 -51.92 -0.39 0.09 16 37 H 0.09 0.50 7.85 -51.93 -0.41 0.09 16 38 H 0.10 0.32 7.88 -51.93 -0.41 -0.09 16 39 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 40 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 41 H 0.14 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.14 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.38 9.95 7.80 -40.82 -0.32 9.63 16 44 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 367.22 15.07 5.53 5.53 Total: -1.00 -38.34 367.22 -9.65 -47.99 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: -7.28 Total: 6.15 kcal Atomic # 6 Polarization: -9.96 SS G_CDS: -0.13 Total: -10.09 kcal Atomic # 7 Polarization: -54.92 SS G_CDS: 0.15 Total: -54.77 kcal Atomic # 8 Polarization: -36.76 SS G_CDS: -2.28 Total: -39.04 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.02 Total: 17.78 kcal Atomic # 16 Polarization: 27.07 SS G_CDS: -0.62 Total: 26.45 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -38.34 -9.65 -47.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690868368.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.106 kcal (2) G-P(sol) polarization free energy of solvation -38.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds