Wall clock time and date at job start Tue Mar 31 2020 05:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.46908 * 2 1 4 4 C 1.52997 * 109.46884 * 240.00271 * 2 1 3 5 5 C 1.53004 * 109.47000 * 174.99897 * 4 2 1 6 6 N 1.46499 * 109.47198 * 179.97438 * 5 4 2 7 7 C 1.34777 * 119.99665 * 180.27868 * 6 5 4 8 8 O 1.21283 * 119.99990 * 359.71991 * 7 6 5 9 9 C 1.50698 * 119.99538 * 179.72653 * 7 6 5 10 10 C 1.52996 * 110.28936 * 57.88097 * 9 7 6 11 11 C 1.54168 * 110.31854 * 295.65358 * 9 7 6 12 12 C 1.53871 * 108.70561 * 213.19068 * 11 9 7 13 13 C 1.55044 * 106.62539 * 47.18658 * 12 11 9 14 14 S 1.82922 * 110.31753 * 180.02562 * 9 7 6 15 15 O 1.42106 * 109.34958 * 234.42501 * 14 9 7 16 16 O 1.42099 * 109.35261 * 7.48786 * 14 9 7 17 17 N 1.46496 * 109.46862 * 119.99783 * 2 1 3 18 18 C 1.36930 * 120.00547 * 275.00003 * 17 2 1 19 19 H 1.08006 * 119.99784 * 0.02562 * 18 17 2 20 20 C 1.38814 * 120.00508 * 180.02562 * 18 17 2 21 21 N 1.31619 * 119.99692 * 359.97438 * 20 18 17 22 22 Si 1.86792 * 120.00272 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47180 * 89.99524 * 22 20 18 24 24 H 1.48504 * 109.47457 * 209.99966 * 22 20 18 25 25 H 1.48508 * 109.47141 * 329.99908 * 22 20 18 26 26 H 1.08999 * 109.47108 * 59.99582 * 1 2 3 27 27 H 1.09001 * 109.46908 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47017 * 300.00188 * 1 2 3 29 29 H 1.08995 * 109.47672 * 55.00228 * 4 2 1 30 30 H 1.09006 * 109.46819 * 294.99658 * 4 2 1 31 31 H 1.09009 * 109.46730 * 59.99606 * 5 4 2 32 32 H 1.08998 * 109.46846 * 300.00150 * 5 4 2 33 33 H 0.97001 * 119.99790 * 359.97438 * 6 5 4 34 34 H 1.09001 * 109.46553 * 60.70047 * 10 9 7 35 35 H 1.08991 * 109.47579 * 180.69695 * 10 9 7 36 36 H 1.09005 * 109.46920 * 300.70304 * 10 9 7 37 37 H 1.09001 * 109.64872 * 333.04654 * 11 9 7 38 38 H 1.09004 * 109.63911 * 93.34140 * 11 9 7 39 39 H 1.08998 * 110.03232 * 287.89326 * 12 11 9 40 40 H 1.09005 * 110.02726 * 166.47455 * 12 11 9 41 41 H 1.09001 * 110.79491 * 199.29458 * 13 12 11 42 42 H 1.08994 * 110.95729 * 75.90682 * 13 12 11 43 43 H 0.97002 * 119.99724 * 95.00245 * 17 2 1 44 44 H 0.96995 * 119.99580 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5649 -0.6132 -1.3138 6 7 4.0532 -1.3043 -2.5096 7 6 5.3746 -1.3449 -2.7720 8 8 6.1589 -0.8050 -2.0207 9 6 5.8774 -2.0611 -3.9989 10 6 5.2423 -1.4670 -5.2576 11 6 5.5703 -3.5688 -3.9022 12 6 6.6987 -4.3479 -4.6003 13 6 8.0340 -3.7543 -4.0823 14 16 7.7009 -1.9527 -4.0950 15 8 8.0748 -1.4138 -5.3556 16 8 8.2016 -1.3699 -2.8996 17 7 2.0183 -0.6906 1.1962 18 6 2.1491 -0.0075 2.3757 19 1 1.8919 1.0403 2.4243 20 6 2.6123 -0.6617 3.5091 21 7 2.9253 -1.9388 3.4499 22 14 2.7900 0.2699 5.1183 23 1 1.5223 0.1777 5.8862 24 1 3.8950 -0.3227 5.9140 25 1 3.0939 1.6955 4.8340 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.6055 -0.2617 -2.1370 30 1 1.7516 -1.7715 -1.2056 31 1 3.9995 -1.0727 -0.4259 32 1 3.8532 0.4371 -1.3573 33 1 3.4259 -1.7364 -3.1102 34 1 5.5111 -0.4136 -5.3376 35 1 5.6052 -2.0021 -6.1350 36 1 4.1581 -1.5617 -5.1969 37 1 5.5141 -3.8649 -2.8547 38 1 4.6204 -3.7813 -4.3926 39 1 6.6276 -4.2204 -5.6804 40 1 6.6360 -5.4056 -4.3439 41 1 8.8544 -4.0010 -4.7562 42 1 8.2485 -4.1007 -3.0714 43 1 2.2490 -1.6317 1.1526 44 1 3.2492 -2.3958 4.2417 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690868369.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:18 Heat of formation + Delta-G solvation = -99.511824 kcal Electronic energy + Delta-G solvation = -25576.517663 eV Core-core repulsion = 21849.467733 eV Total energy + Delta-G solvation = -3727.049931 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -40.07454 -37.36525 -36.91005 -36.47386 -35.95620 -34.43064 -32.68252 -32.07974 -29.24156 -28.07378 -27.31976 -25.13182 -23.84122 -22.73353 -21.96205 -20.67502 -19.82794 -18.81206 -17.71090 -17.17779 -16.94851 -16.27188 -15.72850 -15.47379 -15.29204 -14.88143 -14.57238 -14.27799 -14.04933 -13.88720 -13.49944 -13.37200 -13.17513 -12.92840 -12.65618 -12.50118 -12.27926 -12.24233 -12.06883 -12.01867 -11.86557 -11.56508 -11.41094 -11.10125 -10.95471 -10.88960 -10.75443 -10.63261 -10.44756 -10.30298 -9.99977 -9.66595 -9.61554 -8.94117 -8.85121 -6.94972 -5.74488 -3.03135 -0.21380 2.32166 2.50970 2.97327 3.41563 3.46476 3.52282 3.53752 3.79812 4.01590 4.16752 4.23170 4.35751 4.51201 4.60855 4.62218 5.04119 5.09825 5.12312 5.20290 5.26362 5.32797 5.36552 5.41039 5.49170 5.55669 5.64707 5.66829 5.85623 6.03850 6.15532 6.30914 6.36769 6.43315 6.61401 6.67453 6.84705 7.04378 7.47318 7.73120 8.19189 8.43974 9.55558 10.11416 10.45957 11.48243 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017854 B = 0.003163 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.864321 B = 8850.768348 C = 9573.484585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.174 3.826 3 H 0.050 0.950 4 C -0.132 4.132 5 C 0.119 3.881 6 N -0.716 5.716 7 C 0.531 3.469 8 O -0.494 6.494 9 C -0.563 4.563 10 C -0.120 4.120 11 C -0.106 4.106 12 C -0.116 4.116 13 C -0.597 4.597 14 S 2.408 3.592 15 O -0.932 6.932 16 O -0.887 6.887 17 N -0.724 5.724 18 C -0.239 4.239 19 H 0.070 0.930 20 C -0.012 4.012 21 N -0.933 5.933 22 Si 0.905 3.095 23 H -0.291 1.291 24 H -0.292 1.292 25 H -0.282 1.282 26 H 0.035 0.965 27 H 0.045 0.955 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.088 0.912 32 H 0.067 0.933 33 H 0.396 0.604 34 H 0.073 0.927 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.091 0.909 38 H 0.100 0.900 39 H 0.088 0.912 40 H 0.100 0.900 41 H 0.137 0.863 42 H 0.141 0.859 43 H 0.383 0.617 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.776 -6.504 -22.588 23.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.064 3.936 3 H 0.068 0.932 4 C -0.171 4.171 5 C -0.003 4.003 6 N -0.367 5.367 7 C 0.312 3.688 8 O -0.367 6.367 9 C -0.654 4.654 10 C -0.178 4.178 11 C -0.145 4.145 12 C -0.155 4.155 13 C -0.727 4.727 14 S 2.585 3.415 15 O -0.929 6.929 16 O -0.884 6.884 17 N -0.365 5.365 18 C -0.370 4.370 19 H 0.088 0.912 20 C -0.208 4.208 21 N -0.581 5.581 22 Si 0.737 3.263 23 H -0.219 1.219 24 H -0.218 1.218 25 H -0.207 1.207 26 H 0.054 0.946 27 H 0.064 0.936 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.106 0.894 32 H 0.085 0.915 33 H 0.230 0.770 34 H 0.092 0.908 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.110 0.890 38 H 0.118 0.882 39 H 0.107 0.893 40 H 0.119 0.881 41 H 0.156 0.844 42 H 0.159 0.841 43 H 0.217 0.783 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 4.960 -5.174 -21.908 23.051 hybrid contribution -0.815 -0.880 0.705 1.391 sum 4.145 -6.054 -21.203 22.437 Atomic orbital electron populations 1.22426 0.99133 1.00797 0.99984 1.20151 0.91877 0.95626 0.85984 0.93242 1.22061 0.93759 1.01802 0.99427 1.21557 0.94504 0.97387 0.86861 1.45972 1.06461 1.56685 1.27613 1.19119 0.83749 0.81066 0.84875 1.91044 1.54092 1.43946 1.47666 1.30520 1.27731 1.03998 1.03108 1.21531 1.01860 1.01810 0.92556 1.22088 1.01056 0.87361 1.03990 1.22167 0.89666 1.02444 1.01196 1.30746 1.05792 1.24920 1.11196 1.09061 0.77660 0.79011 0.75733 1.93597 1.79827 1.76359 1.43134 1.93738 1.75247 1.73477 1.45908 1.42443 1.78117 1.10633 1.05357 1.19221 1.36557 0.93878 0.87325 0.91205 1.24713 1.02057 0.95962 0.98048 1.69649 1.50905 1.08703 1.28871 0.86214 0.77194 0.78936 0.84001 1.21852 1.21792 1.20727 0.94589 0.93555 0.92699 0.91914 0.91601 0.89372 0.91493 0.76990 0.90760 0.89953 0.90274 0.88992 0.88189 0.89341 0.88125 0.84439 0.84119 0.78315 0.93563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.78 9.49 37.16 0.35 -2.43 16 2 C 0.17 3.26 2.89 -67.93 -0.20 3.06 16 3 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 4 C -0.13 -1.91 4.87 -26.73 -0.13 -2.04 16 5 C 0.12 1.91 5.56 -4.04 -0.02 1.89 16 6 N -0.72 -8.90 5.42 -60.29 -0.33 -9.22 16 7 C 0.53 7.46 6.40 -10.99 -0.07 7.39 16 8 O -0.49 -9.66 13.97 -18.57 -0.26 -9.92 16 9 C -0.56 -5.35 0.93 -91.16 -0.08 -5.44 16 10 C -0.12 -0.86 7.78 37.16 0.29 -0.57 16 11 C -0.11 -0.67 5.44 -25.67 -0.14 -0.81 16 12 C -0.12 -0.56 6.48 -25.20 -0.16 -0.72 16 13 C -0.60 -3.96 7.30 38.24 0.28 -3.69 16 14 S 2.41 27.10 5.77 -107.50 -0.62 26.48 16 15 O -0.93 -11.95 17.24 -57.73 -1.00 -12.94 16 16 O -0.89 -14.90 15.27 -67.18 -1.03 -15.93 16 17 N -0.72 -17.48 4.57 -53.43 -0.24 -17.73 16 18 C -0.24 -6.56 9.93 -15.06 -0.15 -6.71 16 19 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 20 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 21 N -0.93 -28.14 13.06 55.49 0.72 -27.42 16 22 Si 0.91 22.68 29.55 -169.99 -5.02 17.66 16 23 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 24 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 25 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 26 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.09 1.77 7.75 -51.92 -0.40 1.37 16 32 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.40 3.45 7.81 -40.82 -0.32 3.13 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.08 0.43 8.10 -51.93 -0.42 0.01 16 36 H 0.08 0.41 7.50 -51.93 -0.39 0.02 16 37 H 0.09 0.67 7.85 -51.93 -0.41 0.26 16 38 H 0.10 0.39 7.88 -51.93 -0.41 -0.02 16 39 H 0.09 0.28 8.14 -51.93 -0.42 -0.15 16 40 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.14 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.14 0.89 8.14 -51.93 -0.42 0.46 16 43 H 0.38 9.83 7.80 -40.82 -0.32 9.52 16 44 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 367.22 15.07 5.53 5.53 Total: -1.00 -37.98 367.22 -9.65 -47.63 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -7.28 Total: 6.34 kcal Atomic # 6 Polarization: -10.35 SS G_CDS: -0.13 Total: -10.48 kcal Atomic # 7 Polarization: -54.52 SS G_CDS: 0.15 Total: -54.36 kcal Atomic # 8 Polarization: -36.51 SS G_CDS: -2.28 Total: -38.79 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.66 kcal Atomic # 16 Polarization: 27.10 SS G_CDS: -0.62 Total: 26.48 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -37.98 -9.65 -47.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690868369.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.882 kcal (2) G-P(sol) polarization free energy of solvation -37.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds