Wall clock time and date at job start Tue Mar 31 2020 05:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.46926 * 2 1 4 4 C 1.52995 * 109.47209 * 239.99540 * 2 1 3 5 5 C 1.53001 * 109.47333 * 174.99881 * 4 2 1 6 6 N 1.46498 * 109.47274 * 180.02562 * 5 4 2 7 7 C 1.34775 * 119.99745 * 179.97438 * 6 5 4 8 8 O 1.21285 * 120.00489 * 0.02562 * 7 6 5 9 9 C 1.50699 * 119.99920 * 179.97438 * 7 6 5 10 10 C 1.53006 * 110.28227 * 74.30353 * 9 7 6 11 11 C 1.54167 * 110.32364 * 196.41539 * 9 7 6 12 12 C 1.53871 * 108.70779 * 146.91385 * 11 9 7 13 13 C 1.55050 * 106.62250 * 312.82120 * 12 11 9 14 14 S 1.82918 * 110.40591 * 312.13044 * 9 7 6 15 15 O 1.42100 * 109.35291 * 352.32738 * 14 9 7 16 16 O 1.42102 * 109.35397 * 125.52880 * 14 9 7 17 17 N 1.46507 * 109.46798 * 119.99770 * 2 1 3 18 18 C 1.36929 * 120.00170 * 274.99760 * 17 2 1 19 19 H 1.08002 * 119.99970 * 0.02562 * 18 17 2 20 20 C 1.38814 * 120.00409 * 180.02562 * 18 17 2 21 21 N 1.31621 * 119.99665 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00233 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.46990 * 90.00031 * 22 20 18 24 24 H 1.48501 * 109.47255 * 210.00061 * 22 20 18 25 25 H 1.48501 * 109.47350 * 330.00182 * 22 20 18 26 26 H 1.08997 * 109.47551 * 299.99797 * 1 2 3 27 27 H 1.08998 * 109.47157 * 60.00636 * 1 2 3 28 28 H 1.09004 * 109.47404 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47042 * 55.00567 * 4 2 1 30 30 H 1.09001 * 109.47375 * 295.00291 * 4 2 1 31 31 H 1.09003 * 109.47007 * 60.00430 * 5 4 2 32 32 H 1.09001 * 109.47225 * 300.00502 * 5 4 2 33 33 H 0.96994 * 120.00018 * 0.02562 * 6 5 4 34 34 H 1.09001 * 109.46801 * 182.11561 * 10 9 7 35 35 H 1.09001 * 109.46998 * 302.11157 * 10 9 7 36 36 H 1.09000 * 109.47050 * 62.11448 * 10 9 7 37 37 H 1.08998 * 109.64513 * 266.76946 * 11 9 7 38 38 H 1.09000 * 109.64069 * 27.19372 * 11 9 7 39 39 H 1.08998 * 110.02921 * 72.10792 * 12 11 9 40 40 H 1.08993 * 110.03022 * 193.48390 * 12 11 9 41 41 H 1.09002 * 110.78856 * 160.70157 * 13 12 11 42 42 H 1.08994 * 110.79438 * 283.97476 * 13 12 11 43 43 H 0.96996 * 119.99634 * 95.00619 * 17 2 1 44 44 H 0.96991 * 119.99892 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5648 -0.6134 -1.3136 6 7 4.0531 -1.3035 -2.5100 7 6 5.3739 -1.3387 -2.7758 8 8 6.1584 -0.7995 -2.0242 9 6 5.8763 -2.0492 -4.0062 10 6 5.5742 -1.2215 -5.2571 11 6 7.3910 -2.3125 -3.8915 12 6 7.7175 -3.6350 -4.6070 13 6 6.6718 -4.6718 -4.1216 14 16 5.1139 -3.7064 -4.1417 15 8 4.3737 -3.9822 -2.9605 16 8 4.4951 -3.8375 -5.4141 17 7 2.0182 -0.6906 1.1963 18 6 2.1490 -0.0075 2.3758 19 1 1.8919 1.0403 2.4243 20 6 2.6122 -0.6617 3.5091 21 7 2.9261 -1.9385 3.4498 22 14 2.7899 0.2701 5.1183 23 1 1.5222 0.1779 5.8863 24 1 3.8949 -0.3224 5.9140 25 1 3.0938 1.6956 4.8340 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.6054 -0.2618 -2.1369 30 1 1.7516 -1.7716 -1.2055 31 1 3.9994 -1.0729 -0.4259 32 1 3.8532 0.4369 -1.3573 33 1 3.4257 -1.7345 -3.1113 34 1 5.9089 -1.7640 -6.1412 35 1 4.5009 -1.0437 -5.3246 36 1 6.0975 -0.2672 -5.1964 37 1 7.9412 -1.4967 -4.3602 38 1 7.6713 -2.3875 -2.8409 39 1 7.6405 -3.5045 -5.6863 40 1 8.7220 -3.9648 -4.3418 41 1 6.6138 -5.5144 -4.8107 42 1 6.9053 -5.0140 -3.1134 43 1 2.2490 -1.6317 1.1527 44 1 3.2493 -2.3957 4.2418 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690868370.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:20 Heat of formation + Delta-G solvation = -130.260029 kcal Electronic energy + Delta-G solvation = -25791.531100 eV Core-core repulsion = 22063.147827 eV Total energy + Delta-G solvation = -3728.383273 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.24206 -38.44663 -38.22122 -37.40254 -37.12534 -35.96326 -34.25111 -33.20798 -31.02021 -29.60796 -27.84818 -26.18750 -25.63498 -24.09213 -22.44711 -21.90901 -21.32447 -19.96936 -19.28087 -18.81088 -17.85880 -17.27256 -16.97499 -16.81114 -16.51943 -16.27531 -15.69103 -15.49617 -15.37458 -15.07100 -14.82195 -14.45779 -14.15468 -14.04183 -13.71073 -13.55707 -13.52986 -13.28860 -13.23578 -13.15077 -12.91355 -12.81658 -12.65449 -12.46024 -12.33270 -12.24600 -12.14577 -11.88747 -11.79695 -11.64777 -11.61048 -11.29514 -10.97085 -10.89906 -10.24709 -8.98720 -7.91520 -5.19517 -1.16640 1.24703 1.45826 1.47968 1.50279 1.55989 1.83078 2.40288 2.57406 2.84505 3.22054 3.40647 3.42119 3.57016 3.69896 3.86388 3.89746 3.95425 4.11692 4.18783 4.33289 4.50447 4.58403 4.62363 4.64097 4.66513 4.71025 4.85484 4.98187 4.99035 5.01892 5.04763 5.07827 5.16206 5.18364 5.28770 5.37415 5.53642 5.59785 6.26255 6.30571 6.94572 7.36073 8.13444 8.35445 9.32282 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018345 B = 0.003338 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.973998 B = 8386.426024 C = 8844.189443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.166 3.834 3 H 0.048 0.952 4 C -0.123 4.123 5 C 0.132 3.868 6 N -0.713 5.713 7 C 0.534 3.466 8 O -0.559 6.559 9 C -0.545 4.545 10 C -0.122 4.122 11 C -0.102 4.102 12 C -0.114 4.114 13 C -0.564 4.564 14 S 2.370 3.630 15 O -0.966 6.966 16 O -0.939 6.939 17 N -0.737 5.737 18 C -0.235 4.235 19 H 0.076 0.924 20 C -0.079 4.079 21 N -0.972 5.972 22 Si 0.970 3.030 23 H -0.287 1.287 24 H -0.299 1.299 25 H -0.270 1.270 26 H 0.036 0.964 27 H 0.076 0.924 28 H 0.041 0.959 29 H 0.107 0.893 30 H 0.065 0.935 31 H 0.041 0.959 32 H 0.065 0.935 33 H 0.404 0.596 34 H 0.113 0.887 35 H 0.072 0.928 36 H 0.087 0.913 37 H 0.116 0.884 38 H 0.075 0.925 39 H 0.118 0.882 40 H 0.127 0.873 41 H 0.171 0.829 42 H 0.147 0.853 43 H 0.370 0.630 44 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.819 -3.283 -25.550 27.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.058 3.942 3 H 0.066 0.934 4 C -0.162 4.162 5 C 0.009 3.991 6 N -0.364 5.364 7 C 0.319 3.681 8 O -0.437 6.437 9 C -0.636 4.636 10 C -0.180 4.180 11 C -0.141 4.141 12 C -0.152 4.152 13 C -0.698 4.698 14 S 2.555 3.445 15 O -0.963 6.963 16 O -0.936 6.936 17 N -0.378 5.378 18 C -0.367 4.367 19 H 0.094 0.906 20 C -0.271 4.271 21 N -0.623 5.623 22 Si 0.799 3.201 23 H -0.214 1.214 24 H -0.226 1.226 25 H -0.195 1.195 26 H 0.055 0.945 27 H 0.095 0.905 28 H 0.061 0.939 29 H 0.125 0.875 30 H 0.083 0.917 31 H 0.059 0.941 32 H 0.083 0.917 33 H 0.240 0.760 34 H 0.131 0.869 35 H 0.091 0.909 36 H 0.106 0.894 37 H 0.135 0.865 38 H 0.094 0.906 39 H 0.136 0.864 40 H 0.145 0.855 41 H 0.189 0.811 42 H 0.166 0.834 43 H 0.202 0.798 44 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 8.368 -2.961 -24.947 26.479 hybrid contribution 0.443 0.012 1.494 1.558 sum 8.810 -2.949 -23.453 25.227 Atomic orbital electron populations 1.22266 0.97065 1.00959 1.01043 1.20439 0.93221 0.95241 0.85340 0.93352 1.21993 0.92715 1.01994 0.99475 1.21208 0.95468 0.96362 0.86064 1.46014 1.07088 1.56173 1.27085 1.19752 0.82303 0.80518 0.85562 1.90709 1.55853 1.46966 1.50220 1.30263 1.11316 1.20541 1.01482 1.21687 1.03755 1.00700 0.91890 1.22125 0.87577 1.00561 1.03827 1.22399 1.00959 0.89128 1.02734 1.30555 1.15015 1.11112 1.13073 1.09887 0.80503 0.79543 0.74599 1.93662 1.70668 1.82630 1.49373 1.93598 1.74587 1.84436 1.40959 1.42693 1.78409 1.10256 1.06397 1.19630 1.34488 0.94177 0.88372 0.90578 1.25533 1.03208 0.96859 1.01456 1.69836 1.52878 1.10340 1.29219 0.85187 0.76798 0.78057 0.80042 1.21382 1.22565 1.19453 0.94517 0.90473 0.93945 0.87505 0.91664 0.94092 0.91670 0.76046 0.86854 0.90864 0.89371 0.86529 0.90614 0.86402 0.85466 0.81091 0.83445 0.79782 0.94267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.32 9.49 71.98 0.68 -4.64 16 2 C 0.17 6.53 2.89 44.99 0.13 6.66 16 3 H 0.05 1.91 8.08 -2.39 -0.02 1.89 16 4 C -0.12 -4.00 4.87 30.59 0.15 -3.85 16 5 C 0.13 4.81 5.56 86.38 0.48 5.29 16 6 N -0.71 -21.62 4.73 -463.06 -2.19 -23.81 16 7 C 0.53 16.04 6.22 87.66 0.54 16.58 16 8 O -0.56 -21.54 15.74 -3.05 -0.05 -21.59 16 9 C -0.54 -10.20 0.96 -11.14 -0.01 -10.21 16 10 C -0.12 -1.59 7.90 71.98 0.57 -1.02 16 11 C -0.10 -1.41 5.12 31.28 0.16 -1.24 16 12 C -0.11 -0.71 6.48 31.59 0.20 -0.50 16 13 C -0.56 -5.43 7.31 72.68 0.53 -4.90 16 14 S 2.37 45.13 5.36 -56.49 -0.30 44.83 16 15 O -0.97 -28.55 16.10 -127.49 -2.05 -30.60 16 16 O -0.94 -19.76 17.17 -127.49 -2.19 -21.95 16 17 N -0.74 -38.23 4.57 -322.94 -1.48 -39.71 16 18 C -0.23 -13.42 9.93 84.04 0.83 -12.58 16 19 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 20 C -0.08 -4.69 5.50 84.86 0.47 -4.23 16 21 N -0.97 -62.21 13.06 21.65 0.28 -61.93 16 22 Si 0.97 48.02 29.55 68.60 2.03 50.05 16 23 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 24 H -0.30 -14.99 7.11 99.48 0.71 -14.28 16 25 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 26 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.11 2.55 8.14 -2.39 -0.02 2.53 16 30 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.04 1.89 7.75 -2.39 -0.02 1.87 16 32 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 33 H 0.40 10.18 7.40 -92.71 -0.69 9.49 16 34 H 0.11 0.83 8.00 -2.39 -0.02 0.81 16 35 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.12 1.22 7.88 -2.39 -0.02 1.20 16 38 H 0.08 1.44 7.25 -2.39 -0.02 1.42 16 39 H 0.12 0.13 8.14 -2.39 -0.02 0.11 16 40 H 0.13 0.33 8.14 -2.39 -0.02 0.31 16 41 H 0.17 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.15 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.37 21.07 7.80 -92.71 -0.72 20.35 16 44 H 0.25 15.48 8.31 -92.71 -0.77 14.71 16 Total: -1.00 -84.79 367.85 -1.62 -86.41 By element: Atomic # 1 Polarization: 33.36 SS G_CDS: -0.41 Total: 32.95 kcal Atomic # 6 Polarization: -19.39 SS G_CDS: 4.74 Total: -14.64 kcal Atomic # 7 Polarization: -122.06 SS G_CDS: -3.39 Total: -125.45 kcal Atomic # 8 Polarization: -69.84 SS G_CDS: -4.29 Total: -74.13 kcal Atomic # 14 Polarization: 48.02 SS G_CDS: 2.03 Total: 50.05 kcal Atomic # 16 Polarization: 45.13 SS G_CDS: -0.30 Total: 44.83 kcal Total: -84.79 -1.62 -86.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690868370.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.854 kcal (2) G-P(sol) polarization free energy of solvation -84.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds