Wall clock time and date at job start Tue Mar 31 2020 05:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47038 * 2 1 4 4 S 1.81402 * 109.47337 * 119.99974 * 2 1 3 5 5 O 1.42101 * 108.57839 * 70.51410 * 4 2 1 6 6 O 1.42102 * 108.57508 * 299.49024 * 4 2 1 7 7 C 1.81393 * 101.92250 * 185.00229 * 4 2 1 8 8 C 1.50699 * 109.47235 * 180.02562 * 7 4 2 9 9 O 1.21285 * 119.99928 * 359.97438 * 8 7 4 10 10 N 1.34781 * 120.00385 * 180.02562 * 8 7 4 11 11 C 1.46503 * 119.99585 * 359.97438 * 10 8 7 12 12 C 1.46498 * 120.00188 * 179.97438 * 10 8 7 13 13 C 1.53001 * 109.46945 * 264.36135 * 12 10 8 14 14 H 1.09001 * 112.78247 * 316.23514 * 13 12 10 15 15 C 1.53756 * 113.55017 * 87.09497 * 13 12 10 16 16 C 1.53501 * 83.25613 * 140.98478 * 15 13 12 17 17 N 1.47064 * 87.98580 * 333.76151 * 16 15 13 18 18 C 1.36939 * 136.05630 * 207.08272 * 17 16 15 19 19 H 1.08001 * 119.99828 * 172.14471 * 18 17 16 20 20 C 1.38808 * 119.99877 * 351.86423 * 18 17 16 21 21 N 1.31620 * 120.00135 * 0.28240 * 20 18 17 22 22 Si 1.86804 * 119.99691 * 180.27270 * 20 18 17 23 23 H 1.48502 * 109.46889 * 90.00573 * 22 20 18 24 24 H 1.48493 * 109.46960 * 210.00183 * 22 20 18 25 25 H 1.48503 * 109.47111 * 330.00642 * 22 20 18 26 26 H 1.09001 * 109.47136 * 299.99853 * 1 2 3 27 27 H 1.08995 * 109.47072 * 60.00216 * 1 2 3 28 28 H 1.09006 * 109.47167 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47136 * 240.00147 * 2 1 3 30 30 H 1.09008 * 109.47369 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.47559 * 300.00075 * 3 2 1 32 32 H 1.09001 * 109.47037 * 60.00086 * 3 2 1 33 33 H 1.08995 * 109.47608 * 59.99975 * 7 4 2 34 34 H 1.09004 * 109.47106 * 299.99935 * 7 4 2 35 35 H 1.09003 * 109.46576 * 270.21520 * 11 10 8 36 36 H 1.08998 * 109.47217 * 30.20891 * 11 10 8 37 37 H 1.08998 * 109.47183 * 150.21703 * 11 10 8 38 38 H 1.09001 * 109.47023 * 144.36053 * 12 10 8 39 39 H 1.08995 * 109.46967 * 24.36320 * 12 10 8 40 40 H 1.09000 * 114.39741 * 27.42680 * 15 13 12 41 41 H 1.08996 * 114.26900 * 254.53729 * 15 13 12 42 42 H 1.09002 * 113.46765 * 218.97842 * 16 15 13 43 43 H 1.09005 * 113.51741 * 88.55174 * 16 15 13 44 44 H 0.96995 * 119.99466 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 16 2.1347 -0.8551 1.4811 5 8 1.8620 -2.2431 1.3456 6 8 1.6604 -0.1636 2.6284 7 6 3.9265 -0.6030 1.3540 8 6 4.6106 -1.2600 2.5252 9 8 3.9539 -1.8407 3.3633 10 7 5.9521 -1.2014 2.6417 11 6 6.7453 -0.4995 1.6296 12 6 6.6169 -1.8396 3.7805 13 6 6.8557 -0.8015 4.8789 14 1 7.2316 0.1451 4.4905 15 6 5.6668 -0.6399 5.8404 16 6 6.7721 -0.5198 6.8987 17 7 7.6337 -1.3190 6.0146 18 6 8.6966 -2.1670 6.1769 19 1 9.0713 -2.7304 5.3352 20 6 9.2960 -2.2980 7.4221 21 7 8.8393 -1.6114 8.4479 22 14 10.7508 -3.4491 7.6417 23 1 12.0119 -2.7068 7.3888 24 1 10.7579 -3.9786 9.0290 25 1 10.6391 -4.5768 6.6820 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 4.1445 0.4649 1.3579 34 1 4.2907 -1.0448 0.4265 35 1 7.0235 -1.1962 0.8387 36 1 6.1563 0.3141 1.2063 37 1 7.6461 -0.0945 2.0905 38 1 7.5723 -2.2537 3.4581 39 1 5.9862 -2.6398 4.1677 40 1 5.0457 -1.5299 5.9419 41 1 5.0903 0.2729 5.6906 42 1 6.5307 -1.0191 7.8371 43 1 7.1265 0.5009 7.0436 44 1 9.2584 -1.7028 9.3178 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691416468.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:47 Heat of formation + Delta-G solvation = -39.623122 kcal Electronic energy + Delta-G solvation = -25678.657560 eV Core-core repulsion = 21954.204599 eV Total energy + Delta-G solvation = -3724.452962 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -39.99903 -37.93833 -37.13469 -36.13238 -35.61772 -35.31923 -32.21920 -31.17757 -28.34341 -27.85142 -27.62816 -26.28511 -23.36978 -23.10985 -22.28476 -19.55469 -19.14146 -18.80476 -17.79222 -16.94294 -16.76629 -16.48317 -16.26857 -15.68866 -15.34962 -14.99208 -14.64162 -14.05212 -13.81817 -13.81030 -13.61701 -13.46583 -13.23767 -12.85359 -12.79526 -12.67601 -12.20833 -12.15058 -12.08235 -12.04312 -11.93183 -11.88870 -11.45437 -11.19570 -11.05923 -10.86973 -10.72818 -10.52791 -10.38466 -10.11713 -9.83883 -9.75231 -9.44323 -8.76912 -8.39840 -6.83795 -5.75394 -3.07811 -0.35116 2.45395 2.49986 2.85672 3.39699 3.44122 3.46994 3.53242 3.69259 4.05850 4.11350 4.19098 4.47672 4.55893 4.64023 4.74073 4.97248 4.99235 5.05875 5.13431 5.21936 5.26100 5.29643 5.48136 5.52135 5.55722 5.56087 5.59589 5.87564 5.97352 6.06501 6.42000 6.45600 6.63934 6.79789 6.83060 7.28425 7.31661 7.51870 7.61951 7.99367 8.02342 9.05048 9.72124 10.68537 11.42906 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.030541 B = 0.002921 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.579458 B = 9583.076929 C = 9767.473224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.585 4.585 3 C -0.149 4.149 4 S 2.450 3.550 5 O -0.921 6.921 6 O -0.913 6.913 7 C -0.660 4.660 8 C 0.537 3.463 9 O -0.522 6.522 10 N -0.597 5.597 11 C 0.073 3.927 12 C 0.111 3.889 13 C 0.128 3.872 14 H 0.041 0.959 15 C -0.161 4.161 16 C 0.158 3.842 17 N -0.600 5.600 18 C -0.221 4.221 19 H 0.080 0.920 20 C -0.006 4.006 21 N -0.916 5.916 22 Si 0.911 3.089 23 H -0.289 1.289 24 H -0.290 1.290 25 H -0.280 1.280 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.073 0.927 29 H 0.136 0.864 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.159 0.841 34 H 0.156 0.844 35 H 0.058 0.942 36 H 0.069 0.931 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.093 0.907 40 H 0.083 0.917 41 H 0.051 0.949 42 H 0.063 0.937 43 H 0.026 0.974 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.412 7.710 -22.683 26.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.693 4.693 3 C -0.206 4.206 4 S 2.626 3.374 5 O -0.918 6.918 6 O -0.910 6.910 7 C -0.787 4.787 8 C 0.322 3.678 9 O -0.399 6.399 10 N -0.330 5.330 11 C -0.070 4.070 12 C -0.012 4.012 13 C 0.020 3.980 14 H 0.058 0.942 15 C -0.199 4.199 16 C 0.032 3.968 17 N -0.326 5.326 18 C -0.348 4.348 19 H 0.097 0.903 20 C -0.203 4.203 21 N -0.563 5.563 22 Si 0.741 3.259 23 H -0.216 1.216 24 H -0.216 1.216 25 H -0.206 1.206 26 H 0.096 0.904 27 H 0.100 0.900 28 H 0.092 0.908 29 H 0.154 0.846 30 H 0.088 0.912 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.177 0.823 34 H 0.174 0.826 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.099 0.901 38 H 0.095 0.905 39 H 0.112 0.888 40 H 0.102 0.898 41 H 0.070 0.930 42 H 0.081 0.919 43 H 0.043 0.957 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -12.904 6.764 -21.379 25.871 hybrid contribution 1.714 0.103 -0.772 1.883 sum -11.190 6.867 -22.150 25.749 Atomic orbital electron populations 1.21628 0.89634 1.04027 1.04794 1.30213 1.07460 1.09891 1.21761 1.21782 1.01448 0.92197 1.05220 1.07704 0.76633 0.76068 0.76990 1.93579 1.82186 1.29645 1.86368 1.93583 1.77142 1.75577 1.44701 1.30915 1.28345 1.11873 1.07583 1.19026 0.83175 0.80549 0.85031 1.90876 1.63569 1.43396 1.42042 1.47727 1.05345 1.54358 1.25586 1.21875 0.96913 0.96617 0.91589 1.22054 0.97255 0.96852 0.85030 1.22497 0.91614 0.94111 0.89765 0.94200 1.23742 0.96081 1.00812 0.99312 1.21943 0.86078 0.93911 0.94843 1.45663 1.35957 1.49819 1.01143 1.18873 1.05345 1.15289 0.95309 0.90270 1.24850 0.99323 1.00056 0.96057 1.69856 1.42440 1.43821 1.00154 0.86146 0.82426 0.80122 0.77222 1.21646 1.21609 1.20566 0.90446 0.90010 0.90848 0.84563 0.91161 0.90137 0.90155 0.82315 0.82584 0.92355 0.91262 0.90122 0.90519 0.88831 0.89844 0.93007 0.91901 0.95650 0.93609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.87 9.19 37.16 0.34 -0.53 16 2 C -0.58 -3.40 3.35 -26.73 -0.09 -3.49 16 3 C -0.15 -0.62 8.90 37.16 0.33 -0.29 16 4 S 2.45 27.20 3.50 -107.50 -0.38 26.82 16 5 O -0.92 -13.84 17.95 -59.54 -1.07 -14.91 16 6 O -0.91 -13.66 17.91 -59.52 -1.07 -14.72 16 7 C -0.66 -5.84 4.24 36.01 0.15 -5.69 16 8 C 0.54 8.08 7.69 -10.98 -0.08 7.99 16 9 O -0.52 -10.30 15.12 2.55 0.04 -10.26 16 10 N -0.60 -8.54 2.87 -181.57 -0.52 -9.06 16 11 C 0.07 0.68 10.26 59.85 0.61 1.29 16 12 C 0.11 2.02 5.42 -4.04 -0.02 2.00 16 13 C 0.13 2.69 4.31 -72.26 -0.31 2.38 16 14 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 15 C -0.16 -3.45 8.03 -26.08 -0.21 -3.66 16 16 C 0.16 3.94 7.22 -8.51 -0.06 3.88 16 17 N -0.60 -15.63 3.64 -176.83 -0.64 -16.28 16 18 C -0.22 -6.18 10.55 -15.06 -0.16 -6.34 16 19 H 0.08 2.10 7.83 -52.49 -0.41 1.68 16 20 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 21 N -0.92 -27.79 11.73 55.49 0.65 -27.14 16 22 Si 0.91 22.25 29.55 -169.99 -5.02 17.23 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 25 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 26 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.14 0.43 8.14 -51.92 -0.42 0.01 16 30 H 0.07 0.15 6.39 -51.92 -0.33 -0.19 16 31 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.16 0.82 6.03 -51.93 -0.31 0.51 16 34 H 0.16 0.74 8.11 -51.92 -0.42 0.31 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.42 6.45 -51.93 -0.33 0.08 16 37 H 0.08 0.78 8.07 -51.93 -0.42 0.36 16 38 H 0.08 1.36 8.11 -51.93 -0.42 0.94 16 39 H 0.09 1.93 7.00 -51.93 -0.36 1.56 16 40 H 0.08 1.88 7.95 -51.93 -0.41 1.47 16 41 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 42 H 0.06 1.72 7.50 -51.93 -0.39 1.33 16 43 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.25 7.44 8.31 -40.82 -0.34 7.11 16 LS Contribution 371.45 15.07 5.60 5.60 Total: -1.00 -39.66 371.45 -9.19 -48.85 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: -7.18 Total: -3.43 kcal Atomic # 6 Polarization: -3.11 SS G_CDS: 0.41 Total: -2.70 kcal Atomic # 7 Polarization: -51.96 SS G_CDS: -0.51 Total: -52.48 kcal Atomic # 8 Polarization: -37.80 SS G_CDS: -2.10 Total: -39.89 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Atomic # 16 Polarization: 27.20 SS G_CDS: -0.38 Total: 26.82 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -39.66 -9.19 -48.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691416468.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.226 kcal (2) G-P(sol) polarization free energy of solvation -39.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds