Wall clock time and date at job start Tue Mar 31 2020 05:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.47132 * 2 1 4 4 S 1.81405 * 109.47360 * 179.97438 * 3 2 1 5 5 O 1.42100 * 108.57368 * 65.51437 * 4 3 2 6 6 O 1.42096 * 108.57919 * 294.48964 * 4 3 2 7 7 C 1.81402 * 101.92174 * 179.97438 * 4 3 2 8 8 C 1.50696 * 109.46826 * 179.97438 * 7 4 3 9 9 O 1.21283 * 120.00563 * 0.02562 * 8 7 4 10 10 N 1.34777 * 119.99885 * 179.97438 * 8 7 4 11 11 C 1.46508 * 120.00015 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.46810 * 179.97438 * 11 10 8 13 13 H 1.09000 * 112.90915 * 43.75281 * 12 11 10 14 14 C 1.53787 * 113.60890 * 175.00176 * 12 11 10 15 15 C 1.53784 * 87.07923 * 139.98364 * 14 12 11 16 16 H 1.09004 * 113.61162 * 220.01809 * 15 14 12 17 17 N 1.46499 * 113.61434 * 89.11404 * 15 14 12 18 18 C 1.36937 * 120.00049 * 155.00183 * 17 15 14 19 19 H 1.08002 * 119.99755 * 359.97438 * 18 17 15 20 20 C 1.38816 * 120.00276 * 180.02562 * 18 17 15 21 21 N 1.31620 * 119.99589 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 120.00144 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47098 * 59.99825 * 22 20 18 24 24 H 1.48500 * 109.47433 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47312 * 300.00490 * 22 20 18 26 26 C 1.53779 * 87.08045 * 334.56667 * 15 14 12 27 27 H 1.08998 * 109.46929 * 60.00042 * 1 2 3 28 28 H 1.09001 * 109.46944 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47203 * 299.99769 * 1 2 3 30 30 H 1.08999 * 109.47296 * 239.99691 * 2 1 3 31 31 H 1.08998 * 109.46929 * 119.99958 * 2 1 3 32 32 H 1.08999 * 109.47282 * 59.99682 * 3 2 1 33 33 H 1.08998 * 109.47179 * 299.99805 * 3 2 1 34 34 H 1.08996 * 109.46901 * 59.99987 * 7 4 3 35 35 H 1.08995 * 109.46857 * 299.99938 * 7 4 3 36 36 H 0.96999 * 120.00101 * 0.02562 * 10 8 7 37 37 H 1.09003 * 109.46643 * 60.00190 * 11 10 8 38 38 H 1.08993 * 109.47454 * 300.00286 * 11 10 8 39 39 H 1.09004 * 113.61202 * 254.53117 * 14 12 11 40 40 H 1.08994 * 113.61447 * 25.43549 * 14 12 11 41 41 H 0.97000 * 120.00274 * 334.99936 * 17 15 14 42 42 H 0.97004 * 119.99594 * 179.97438 * 21 20 18 43 43 H 1.09006 * 113.61307 * 270.88660 * 26 15 14 44 44 H 1.08999 * 113.69146 * 139.99146 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 16 3.8540 1.4425 0.0008 5 8 4.3072 0.8840 -1.2248 6 8 4.3063 0.8844 1.2268 7 6 4.2287 3.2174 -0.0001 8 6 5.7226 3.4154 0.0010 9 8 6.4618 2.4539 0.0018 10 7 6.2373 4.6610 0.0001 11 6 7.6896 4.8535 0.0018 12 6 8.0056 6.3505 -0.0004 13 1 7.3827 6.9166 0.6921 14 6 9.5062 6.6635 0.1239 15 6 9.2787 7.7794 -0.9095 16 1 10.0814 7.8665 -1.6419 17 7 8.9092 9.0653 -0.3128 18 6 9.1658 10.2308 -0.9844 19 1 9.6410 10.2019 -1.9538 20 6 8.8162 11.4493 -0.4188 21 7 8.2376 11.4844 0.7629 22 14 9.1669 13.0391 -1.3347 23 1 8.4512 13.0290 -2.6359 24 1 8.7003 14.1915 -0.5226 25 1 10.6274 13.1606 -1.5742 26 6 8.0748 6.9635 -1.4090 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9563 0.8899 33 1 1.6767 1.9562 -0.8900 34 1 3.8006 3.6795 0.8894 35 1 3.8014 3.6784 -0.8906 36 1 5.6461 5.4300 -0.0010 37 1 8.1185 4.3907 -0.8871 38 1 8.1162 4.3930 0.8928 39 1 9.7952 7.0321 1.1082 40 1 10.1507 5.8610 -0.2348 41 1 8.4828 9.0913 0.5581 42 1 7.9936 12.3359 1.1583 43 1 8.3281 6.2430 -2.1868 44 1 7.2076 7.5731 -1.6629 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691830997.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:53 Heat of formation + Delta-G solvation = -84.581965 kcal Electronic energy + Delta-G solvation = -24067.796934 eV Core-core repulsion = 20341.394411 eV Total energy + Delta-G solvation = -3726.402524 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -40.05379 -38.60446 -37.23839 -36.28910 -35.36963 -34.87027 -33.30778 -31.28938 -30.03422 -28.25475 -27.08449 -25.11927 -23.77164 -22.56940 -21.81819 -20.98637 -19.17203 -18.53358 -17.75269 -17.43979 -16.97263 -16.85253 -16.33180 -15.92366 -15.57368 -15.20532 -14.93703 -14.32793 -14.22681 -14.07441 -13.73810 -13.62169 -13.08728 -13.08362 -12.94733 -12.88645 -12.33551 -12.28685 -12.22269 -11.98990 -11.97735 -11.48758 -11.44894 -11.41803 -11.10020 -10.87847 -10.84079 -10.61076 -10.48330 -10.24392 -9.94942 -9.74253 -9.56572 -9.19671 -8.93571 -7.05821 -5.85880 -3.15057 -0.49400 2.21867 2.37711 2.74552 3.38737 3.43517 3.44250 3.45156 3.62134 4.02813 4.12386 4.21481 4.48319 4.51209 4.57781 4.71451 4.81085 4.96916 4.98169 4.99381 5.09550 5.15910 5.39898 5.42622 5.44366 5.53814 5.62930 5.63310 5.78879 5.87722 6.01925 6.15863 6.21195 6.31637 6.52165 6.67563 6.82505 6.97772 7.16896 7.63854 7.83475 8.33327 9.44000 10.01119 10.35363 11.36424 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.026168 B = 0.002059 C = 0.001971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.759805 B =13593.577705 C =14202.296206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.118 4.118 3 C -0.620 4.620 4 S 2.451 3.549 5 O -0.920 6.920 6 O -0.920 6.920 7 C -0.663 4.663 8 C 0.537 3.463 9 O -0.534 6.534 10 N -0.710 5.710 11 C 0.126 3.874 12 C -0.121 4.121 13 H 0.094 0.906 14 C -0.147 4.147 15 C 0.167 3.833 16 H 0.063 0.937 17 N -0.705 5.705 18 C -0.244 4.244 19 H 0.072 0.928 20 C -0.013 4.013 21 N -0.933 5.933 22 Si 0.910 3.090 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.285 1.285 26 C -0.169 4.169 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.134 0.866 33 H 0.134 0.866 34 H 0.160 0.840 35 H 0.160 0.840 36 H 0.406 0.594 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.078 0.922 41 H 0.385 0.615 42 H 0.256 0.744 43 H 0.068 0.932 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.653 -19.902 -0.824 25.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.156 4.156 3 C -0.748 4.748 4 S 2.628 3.372 5 O -0.917 6.917 6 O -0.917 6.917 7 C -0.790 4.790 8 C 0.321 3.679 9 O -0.412 6.412 10 N -0.360 5.360 11 C 0.003 3.997 12 C -0.140 4.140 13 H 0.112 0.888 14 C -0.187 4.187 15 C 0.055 3.945 16 H 0.081 0.919 17 N -0.344 5.344 18 C -0.375 4.375 19 H 0.090 0.910 20 C -0.209 4.209 21 N -0.581 5.581 22 Si 0.740 3.260 23 H -0.212 1.212 24 H -0.217 1.217 25 H -0.212 1.212 26 C -0.210 4.210 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.152 0.848 33 H 0.152 0.848 34 H 0.178 0.822 35 H 0.178 0.822 36 H 0.241 0.759 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.097 0.903 41 H 0.219 0.781 42 H 0.066 0.934 43 H 0.087 0.913 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -14.440 -21.056 -0.920 25.548 hybrid contribution -1.066 2.269 -0.133 2.510 sum -15.505 -18.787 -1.053 24.382 Atomic orbital electron populations 1.21732 0.93792 1.02487 1.02404 1.21279 0.98468 0.91706 1.04176 1.30488 1.25885 1.06661 1.11794 1.07469 0.77440 0.76422 0.75850 1.93587 1.78612 1.73675 1.45799 1.93587 1.78642 1.73673 1.45773 1.30889 1.03434 1.31140 1.13523 1.19092 0.87398 0.84391 0.77027 1.90865 1.60647 1.39594 1.50078 1.45938 1.09295 1.07135 1.73644 1.21651 0.78502 0.97148 1.02401 1.22736 0.98767 0.92489 0.99961 0.88782 1.23452 0.93989 0.99722 1.01548 1.21055 0.94253 0.85445 0.93770 0.91860 1.42159 1.71295 0.99524 1.21416 1.19253 1.33132 0.84353 1.00732 0.91014 1.24769 1.01330 0.97778 0.96994 1.69651 1.46746 1.25165 1.16540 0.86231 0.77958 0.83082 0.78682 1.21227 1.21681 1.21160 1.23911 1.02828 0.99890 0.94417 0.92202 0.91806 0.92196 0.90000 0.90003 0.84765 0.84756 0.82216 0.82198 0.75867 0.90981 0.91226 0.91218 0.90330 0.78124 0.93378 0.91296 0.91498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.61 9.91 37.16 0.37 -0.24 16 2 C -0.12 -0.65 5.94 -26.74 -0.16 -0.81 16 3 C -0.62 -2.70 5.81 37.15 0.22 -2.48 16 4 S 2.45 22.32 3.96 -107.50 -0.43 21.90 16 5 O -0.92 -12.09 17.95 -59.52 -1.07 -13.16 16 6 O -0.92 -12.07 17.95 -59.53 -1.07 -13.13 16 7 C -0.66 -4.58 6.29 36.00 0.23 -4.36 16 8 C 0.54 6.68 7.85 -10.99 -0.09 6.60 16 9 O -0.53 -9.00 15.62 2.56 0.04 -8.96 16 10 N -0.71 -8.05 5.56 -60.29 -0.33 -8.39 16 11 C 0.13 1.63 5.51 -4.04 -0.02 1.61 16 12 C -0.12 -1.71 3.63 -89.81 -0.33 -2.04 16 13 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 14 C -0.15 -2.28 7.39 -25.91 -0.19 -2.47 16 15 C 0.17 3.16 4.56 -67.12 -0.31 2.85 16 16 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 17 N -0.71 -16.91 5.31 -52.63 -0.28 -17.19 16 18 C -0.24 -6.56 9.97 -15.06 -0.15 -6.71 16 19 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 20 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 21 N -0.93 -27.30 13.06 55.49 0.72 -26.58 16 22 Si 0.91 21.82 29.55 -169.99 -5.02 16.79 16 23 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 26 C -0.17 -2.69 7.43 -25.92 -0.19 -2.88 16 27 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 28 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 30 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.13 0.26 8.14 -51.92 -0.42 -0.16 16 33 H 0.13 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.16 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.16 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.41 3.61 8.47 -40.82 -0.35 3.27 16 37 H 0.07 0.97 7.84 -51.93 -0.41 0.56 16 38 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.08 1.06 8.10 -51.93 -0.42 0.64 16 41 H 0.38 9.73 7.90 -40.82 -0.32 9.41 16 42 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 43 H 0.07 0.99 7.90 -51.93 -0.41 0.58 16 44 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 380.35 15.07 5.73 5.73 Total: -1.00 -37.96 380.35 -9.79 -47.76 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -7.37 Total: 6.62 kcal Atomic # 6 Polarization: -10.68 SS G_CDS: -0.72 Total: -11.40 kcal Atomic # 7 Polarization: -52.26 SS G_CDS: 0.11 Total: -52.15 kcal Atomic # 8 Polarization: -33.15 SS G_CDS: -2.10 Total: -35.25 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 16 Polarization: 22.32 SS G_CDS: -0.43 Total: 21.90 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -37.96 -9.79 -47.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691830997.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.825 kcal (2) G-P(sol) polarization free energy of solvation -37.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds