Wall clock time and date at job start Tue Mar 31 2020 05:03:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47218 * 2 1 4 4 S 1.81402 * 109.47015 * 179.97438 * 3 2 1 5 5 O 1.42104 * 108.57740 * 65.51589 * 4 3 2 6 6 O 1.42100 * 108.58046 * 294.49241 * 4 3 2 7 7 C 1.81393 * 101.92273 * 180.02562 * 4 3 2 8 8 C 1.50704 * 109.47487 * 179.97438 * 7 4 3 9 9 O 1.21284 * 119.99351 * 0.02562 * 8 7 4 10 10 N 1.34774 * 120.00481 * 179.97438 * 8 7 4 11 11 C 1.46500 * 119.99419 * 0.02562 * 10 8 7 12 12 C 1.46497 * 120.00148 * 179.97438 * 10 8 7 13 13 H 1.09002 * 110.91399 * 350.51772 * 12 10 8 14 14 C 1.55151 * 111.00623 * 226.61211 * 12 10 8 15 15 C 1.54329 * 102.94485 * 277.43188 * 14 12 10 16 16 N 1.47029 * 107.26789 * 337.80273 * 15 14 12 17 17 C 1.36929 * 125.65078 * 178.97336 * 16 15 14 18 18 H 1.08003 * 120.00350 * 179.97438 * 17 16 15 19 19 C 1.38819 * 119.99970 * 359.97438 * 17 16 15 20 20 N 1.31620 * 119.99766 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 120.00218 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47166 * 59.99875 * 21 19 17 23 23 H 1.48501 * 109.47162 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.46947 * 299.99777 * 21 19 17 25 25 C 1.47433 * 108.70086 * 358.94802 * 16 15 14 26 26 H 1.08998 * 109.47362 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47335 * 300.00164 * 1 2 3 28 28 H 1.09003 * 109.47019 * 59.99776 * 1 2 3 29 29 H 1.09008 * 109.46740 * 240.00066 * 2 1 3 30 30 H 1.08992 * 109.46768 * 120.00628 * 2 1 3 31 31 H 1.09003 * 109.46805 * 60.00593 * 3 2 1 32 32 H 1.08992 * 109.47764 * 300.00018 * 3 2 1 33 33 H 1.09000 * 109.47266 * 60.00414 * 7 4 3 34 34 H 1.09003 * 109.47370 * 300.00372 * 7 4 3 35 35 H 1.09001 * 109.47209 * 263.94367 * 11 10 8 36 36 H 1.09003 * 109.47593 * 23.95065 * 11 10 8 37 37 H 1.09009 * 109.46707 * 143.94898 * 11 10 8 38 38 H 1.08995 * 110.71977 * 159.06502 * 14 12 10 39 39 H 1.09001 * 110.72028 * 35.79299 * 14 12 10 40 40 H 1.09000 * 109.88082 * 218.39125 * 15 14 12 41 41 H 1.08998 * 109.88287 * 97.21884 * 15 14 12 42 42 H 0.96994 * 120.00135 * 180.02562 * 20 19 17 43 43 H 1.08994 * 110.36333 * 142.96663 * 25 16 15 44 44 H 1.09003 * 110.35883 * 265.28164 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 16 3.8540 1.4424 0.0008 5 8 4.3073 0.8839 -1.2248 6 8 4.3063 0.8841 1.2268 7 6 4.2289 3.2172 0.0015 8 6 5.7228 3.4152 0.0028 9 8 6.4619 2.4535 0.0027 10 7 6.2376 4.6607 0.0030 11 6 5.3447 5.8222 0.0024 12 6 7.6899 4.8531 0.0048 13 1 8.2073 3.9087 0.1736 14 6 8.1092 5.9130 1.0575 15 6 7.8752 7.2468 0.3174 16 7 7.9008 6.9566 -1.1238 17 6 7.7123 7.8709 -2.1255 18 1 7.7507 7.5565 -3.1580 19 6 7.4719 9.2022 -1.8139 20 7 7.4246 9.5853 -0.5556 21 14 7.2156 10.4497 -3.1803 22 1 6.0401 10.0545 -3.9973 23 1 6.9780 11.7906 -2.5882 24 1 8.4243 10.4955 -4.0418 25 6 8.1635 5.5181 -1.3117 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 1.6768 1.9562 0.8901 32 1 1.6768 1.9563 -0.8899 33 1 3.8009 3.6786 0.8914 34 1 3.8015 3.6792 -0.8885 35 1 5.2098 6.1763 -1.0196 36 1 4.3784 5.5380 0.4191 37 1 5.7818 6.6167 0.6074 38 1 9.1601 5.7983 1.3228 39 1 7.4774 5.8476 1.9434 40 1 8.6668 7.9532 0.5673 41 1 6.9055 7.6598 0.5952 42 1 7.2563 10.5154 -0.3378 43 1 7.5918 5.1354 -2.1571 44 1 9.2288 5.3437 -1.4630 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698577582.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:56 Heat of formation + Delta-G solvation = -67.693369 kcal Electronic energy + Delta-G solvation = -25757.541616 eV Core-core repulsion = 22031.871437 eV Total energy + Delta-G solvation = -3725.670179 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -40.03237 -37.62080 -37.02820 -36.07946 -35.21746 -34.47311 -32.39185 -30.54743 -29.16540 -28.21520 -27.93971 -25.91094 -24.40755 -22.46080 -21.15662 -20.16965 -19.01815 -18.69062 -17.63999 -17.11942 -16.65933 -16.41870 -16.27916 -15.72540 -15.41057 -14.98609 -14.70269 -14.01188 -13.92969 -13.85614 -13.50066 -13.01398 -12.94461 -12.86610 -12.53812 -12.27183 -12.08173 -12.01958 -11.95822 -11.86310 -11.82235 -11.71807 -11.32457 -11.10359 -11.01368 -10.95326 -10.81455 -10.63451 -10.43977 -10.22770 -10.01323 -9.74798 -9.70730 -8.76860 -8.32447 -6.89058 -5.80365 -3.13305 -0.27928 2.53859 2.59536 2.99145 3.34165 3.39860 3.40171 3.61386 3.82250 4.17839 4.30758 4.34090 4.42864 4.68357 4.70707 4.94567 4.96990 5.13042 5.21788 5.29055 5.35360 5.40090 5.48064 5.53814 5.56248 5.66757 5.74078 5.79069 5.96040 6.11638 6.26064 6.32972 6.44564 6.51496 6.60919 6.88134 7.43545 7.47964 7.56765 7.73377 8.11478 8.15659 9.13428 9.72973 10.39058 11.31310 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.021489 B = 0.003167 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.699064 B = 8839.048152 C = 9482.368164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.117 4.117 3 C -0.621 4.621 4 S 2.451 3.549 5 O -0.920 6.920 6 O -0.922 6.922 7 C -0.656 4.656 8 C 0.537 3.463 9 O -0.544 6.544 10 N -0.574 5.574 11 C 0.065 3.935 12 C 0.120 3.880 13 H 0.103 0.897 14 C -0.157 4.157 15 C 0.172 3.828 16 N -0.603 5.603 17 C -0.226 4.226 18 H 0.076 0.924 19 C -0.007 4.007 20 N -0.923 5.923 21 Si 0.912 3.088 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.285 1.285 25 C 0.125 3.875 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.133 0.867 32 H 0.134 0.866 33 H 0.158 0.842 34 H 0.158 0.842 35 H 0.071 0.929 36 H 0.056 0.944 37 H 0.100 0.900 38 H 0.073 0.927 39 H 0.065 0.935 40 H 0.044 0.956 41 H 0.055 0.945 42 H 0.253 0.747 43 H 0.044 0.956 44 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.668 -12.961 4.100 19.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.156 4.156 3 C -0.750 4.750 4 S 2.629 3.371 5 O -0.917 6.917 6 O -0.919 6.919 7 C -0.783 4.783 8 C 0.322 3.678 9 O -0.423 6.423 10 N -0.305 5.305 11 C -0.077 4.077 12 C 0.016 3.984 13 H 0.121 0.879 14 C -0.196 4.196 15 C 0.047 3.953 16 N -0.330 5.330 17 C -0.354 4.354 18 H 0.094 0.906 19 C -0.203 4.203 20 N -0.571 5.571 21 Si 0.742 3.258 22 H -0.213 1.213 23 H -0.216 1.216 24 H -0.212 1.212 25 C -0.002 4.002 26 H 0.081 0.919 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.100 0.900 30 H 0.099 0.901 31 H 0.151 0.849 32 H 0.152 0.848 33 H 0.175 0.825 34 H 0.176 0.824 35 H 0.089 0.911 36 H 0.075 0.925 37 H 0.118 0.882 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.062 0.938 41 H 0.073 0.927 42 H 0.063 0.937 43 H 0.062 0.938 44 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -12.716 -13.855 4.080 19.244 hybrid contribution -0.844 1.879 -0.749 2.192 sum -13.560 -11.976 3.331 18.396 Atomic orbital electron populations 1.21731 0.93911 1.02368 1.02375 1.21269 0.98358 0.91836 1.04108 1.30497 1.26271 1.06473 1.11713 1.07437 0.77272 0.76589 0.75824 1.93581 1.78485 1.73878 1.45781 1.93572 1.78569 1.73935 1.45815 1.30846 1.04008 1.30257 1.13231 1.19046 0.87230 0.84075 0.77400 1.90815 1.60527 1.39353 1.51650 1.47560 1.07594 1.05206 1.70090 1.22280 0.92307 0.88683 1.04444 1.22400 0.78732 0.99408 0.97854 0.87877 1.23276 1.00976 0.97710 0.97603 1.21356 1.00892 0.90407 0.82611 1.44484 1.84298 1.01978 1.02198 1.18995 1.41688 0.87862 0.86879 0.90575 1.24764 1.02140 0.96962 0.96437 1.69930 1.55877 1.16067 1.15240 0.86209 0.78033 0.80682 0.80871 1.21252 1.21638 1.21207 1.21926 0.97543 0.86224 0.94521 0.91895 0.92242 0.92219 0.90038 0.90066 0.84866 0.84803 0.82454 0.82367 0.91083 0.92490 0.88185 0.90866 0.91627 0.93795 0.92722 0.93683 0.93805 0.94957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 9.91 37.16 0.37 -0.43 16 2 C -0.12 -0.83 5.94 -26.73 -0.16 -0.99 16 3 C -0.62 -3.91 5.81 37.15 0.22 -3.69 16 4 S 2.45 28.00 3.96 -107.50 -0.43 27.58 16 5 O -0.92 -14.20 17.95 -59.51 -1.07 -15.27 16 6 O -0.92 -13.86 17.94 -59.54 -1.07 -14.93 16 7 C -0.66 -6.86 4.75 36.01 0.17 -6.69 16 8 C 0.54 8.81 7.69 -10.98 -0.08 8.73 16 9 O -0.54 -10.83 15.03 2.55 0.04 -10.79 16 10 N -0.57 -9.66 2.91 -171.48 -0.50 -10.16 16 11 C 0.06 1.01 9.05 59.85 0.54 1.55 16 12 C 0.12 2.19 3.63 -65.79 -0.24 1.95 16 13 H 0.10 1.87 7.07 -51.93 -0.37 1.50 16 14 C -0.16 -2.80 6.07 -24.90 -0.15 -2.95 16 15 C 0.17 3.81 4.35 -3.06 -0.01 3.80 16 16 N -0.60 -14.33 2.87 -170.06 -0.49 -14.81 16 17 C -0.23 -5.94 10.28 -15.06 -0.15 -6.09 16 18 H 0.08 1.97 7.83 -52.48 -0.41 1.56 16 19 C -0.01 -0.18 5.49 -17.43 -0.10 -0.28 16 20 N -0.92 -25.35 10.31 55.49 0.57 -24.78 16 21 Si 0.91 21.19 29.55 -169.99 -5.02 16.17 16 22 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 25 C 0.12 2.57 6.76 -2.53 -0.02 2.56 16 26 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.08 0.58 8.14 -51.92 -0.42 0.16 16 30 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.13 0.50 8.14 -51.92 -0.42 0.08 16 32 H 0.13 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.16 1.06 7.42 -51.92 -0.39 0.67 16 34 H 0.16 1.18 8.11 -51.92 -0.42 0.76 16 35 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.06 0.63 6.23 -51.93 -0.32 0.31 16 37 H 0.10 1.74 4.19 -51.92 -0.22 1.52 16 38 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 39 H 0.07 1.07 8.07 -51.93 -0.42 0.65 16 40 H 0.04 1.11 7.51 -51.93 -0.39 0.72 16 41 H 0.06 1.28 5.10 -51.93 -0.26 1.02 16 42 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 43 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 360.98 15.07 5.44 5.44 Total: -1.00 -36.13 360.98 -9.12 -45.26 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -6.98 Total: -1.16 kcal Atomic # 6 Polarization: -2.92 SS G_CDS: 0.38 Total: -2.54 kcal Atomic # 7 Polarization: -49.34 SS G_CDS: -0.41 Total: -49.75 kcal Atomic # 8 Polarization: -38.89 SS G_CDS: -2.10 Total: -40.99 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: 28.00 SS G_CDS: -0.43 Total: 27.58 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -36.13 -9.12 -45.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698577582.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.436 kcal (2) G-P(sol) polarization free energy of solvation -36.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds