Wall clock time and date at job start Tue Mar 31 2020 05:04:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 S 1.81408 * 109.46799 * 180.02562 * 3 2 1 5 5 O 1.42097 * 108.57460 * 294.48291 * 4 3 2 6 6 O 1.42099 * 108.57792 * 65.51151 * 4 3 2 7 7 C 1.81403 * 101.91685 * 179.97438 * 4 3 2 8 8 C 1.50707 * 109.46503 * 179.97438 * 7 4 3 9 9 O 1.21273 * 120.00400 * 359.97438 * 8 7 4 10 10 N 1.34782 * 119.99537 * 179.97438 * 8 7 4 11 11 C 1.46497 * 120.00111 * 0.02562 * 10 8 7 12 12 C 1.46500 * 119.99953 * 179.97438 * 10 8 7 13 13 H 1.09001 * 110.63687 * 1.69340 * 12 10 8 14 14 C 1.55155 * 110.71738 * 125.02531 * 12 10 8 15 15 C 1.54911 * 101.57865 * 153.86984 * 14 12 10 16 16 N 1.47425 * 104.83350 * 322.99031 * 15 14 12 17 17 C 1.36934 * 125.64990 * 204.09786 * 16 15 14 18 18 H 1.07996 * 120.00241 * 180.02562 * 17 16 15 19 19 C 1.38817 * 119.99663 * 0.03806 * 17 16 15 20 20 N 1.31612 * 120.00427 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99716 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.46957 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47393 * 119.99843 * 21 19 17 24 24 H 1.48498 * 109.46987 * 240.00192 * 21 19 17 25 25 C 1.47019 * 108.70107 * 24.13169 * 16 15 14 26 26 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 27 27 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 28 28 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 30 30 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 31 31 H 1.09001 * 109.47194 * 299.99650 * 3 2 1 32 32 H 1.08992 * 109.47399 * 59.99823 * 3 2 1 33 33 H 1.08998 * 109.47551 * 299.99580 * 7 4 3 34 34 H 1.08995 * 109.47346 * 59.99916 * 7 4 3 35 35 H 1.09007 * 109.47272 * 89.99910 * 11 10 8 36 36 H 1.09004 * 109.47065 * 209.99771 * 11 10 8 37 37 H 1.09002 * 109.47255 * 329.99689 * 11 10 8 38 38 H 1.09004 * 111.00663 * 271.93908 * 14 12 10 39 39 H 1.08998 * 111.00595 * 35.79331 * 14 12 10 40 40 H 1.09004 * 110.36129 * 204.15474 * 15 14 12 41 41 H 1.08998 * 110.46060 * 81.87652 * 15 14 12 42 42 H 0.97001 * 120.00294 * 179.97438 * 20 19 17 43 43 H 1.09006 * 109.88037 * 239.52071 * 25 16 15 44 44 H 1.09001 * 109.88292 * 118.35877 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 3.8540 1.4424 -0.0008 5 8 4.3072 0.8840 1.2248 6 8 4.3062 0.8843 -1.2268 7 6 4.2287 3.2173 -0.0015 8 6 5.7227 3.4152 -0.0015 9 8 6.4618 2.4538 -0.0006 10 7 6.2374 4.6609 -0.0025 11 6 5.3446 5.8224 -0.0030 12 6 7.6897 4.8534 -0.0020 13 1 8.2045 3.8931 -0.0309 14 6 8.1250 5.7500 -1.1911 15 6 9.4396 6.3662 -0.6509 16 7 9.1884 6.5930 0.7840 17 6 9.8333 7.5085 1.5721 18 1 9.5759 7.5978 2.6172 19 6 10.8176 8.3220 1.0277 20 7 11.1308 8.2137 -0.2460 21 14 11.6978 9.5704 2.1031 22 1 11.1650 9.4944 3.4872 23 1 13.1529 9.2746 2.1154 24 1 11.4745 10.9349 1.5615 25 6 8.1316 5.6729 1.2287 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3635 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9563 0.8899 33 1 3.8007 3.6787 -0.8914 34 1 3.8014 3.6792 0.8885 35 1 5.1235 6.1112 1.0246 36 1 5.8286 6.6525 -0.5175 37 1 4.4174 5.5678 -0.5164 38 1 8.3115 5.1523 -2.0834 39 1 7.3832 6.5237 -1.3890 40 1 9.6502 7.3105 -1.1530 41 1 10.2693 5.6723 -0.7858 42 1 11.8183 8.7824 -0.6265 43 1 7.2866 6.2400 1.6193 44 1 8.5204 5.0059 1.9982 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698577587.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:00 Heat of formation + Delta-G solvation = -71.357471 kcal Electronic energy + Delta-G solvation = -25243.031704 eV Core-core repulsion = 21517.202638 eV Total energy + Delta-G solvation = -3725.829066 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.11631 -37.50953 -37.12456 -36.17131 -35.31136 -34.96619 -32.39206 -30.73636 -29.15987 -28.17508 -27.57114 -26.56562 -24.48874 -22.50317 -20.96462 -20.27620 -19.11914 -18.83991 -17.80813 -17.09769 -16.75306 -16.56182 -16.43792 -15.81042 -15.50433 -15.06247 -14.70170 -14.18470 -14.01253 -13.78451 -13.55769 -13.10867 -13.02695 -12.99942 -12.84489 -12.59658 -12.22347 -12.16892 -12.10864 -11.93714 -11.91803 -11.61479 -11.39563 -11.24851 -11.09388 -10.92699 -10.85862 -10.73147 -10.53638 -10.13199 -10.02259 -9.87435 -9.60375 -8.70939 -8.54078 -6.89772 -5.70112 -3.12639 -0.38777 2.38288 2.48870 2.80328 3.37061 3.42732 3.45208 3.48906 3.71250 4.07162 4.16877 4.19565 4.45806 4.56463 4.63343 4.76162 4.87259 5.04101 5.05273 5.14743 5.28168 5.35696 5.47131 5.47542 5.49257 5.49743 5.62303 5.65679 5.67283 5.84095 6.12664 6.27542 6.46374 6.50612 6.63207 6.82072 7.32851 7.46017 7.57792 7.78931 7.94501 8.29722 9.16513 9.76943 10.40757 11.33787 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.040183 B = 0.002514 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.650875 B =11136.983851 C =11242.749719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.118 4.118 3 C -0.620 4.620 4 S 2.450 3.550 5 O -0.918 6.918 6 O -0.919 6.919 7 C -0.658 4.658 8 C 0.539 3.461 9 O -0.533 6.533 10 N -0.588 5.588 11 C 0.070 3.930 12 C 0.122 3.878 13 H 0.108 0.892 14 C -0.153 4.153 15 C 0.152 3.848 16 N -0.602 5.602 17 C -0.222 4.222 18 H 0.078 0.922 19 C -0.011 4.011 20 N -0.922 5.922 21 Si 0.916 3.084 22 H -0.280 1.280 23 H -0.290 1.290 24 H -0.290 1.290 25 C 0.129 3.871 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.063 0.937 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.133 0.867 32 H 0.133 0.867 33 H 0.158 0.842 34 H 0.158 0.842 35 H 0.061 0.939 36 H 0.086 0.914 37 H 0.068 0.932 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.111 0.889 41 H 0.017 0.983 42 H 0.252 0.748 43 H 0.028 0.972 44 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.731 -9.678 -1.967 25.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.156 4.156 3 C -0.749 4.749 4 S 2.627 3.373 5 O -0.915 6.915 6 O -0.916 6.916 7 C -0.785 4.785 8 C 0.324 3.676 9 O -0.411 6.411 10 N -0.319 5.319 11 C -0.073 4.073 12 C 0.019 3.981 13 H 0.126 0.874 14 C -0.192 4.192 15 C 0.027 3.973 16 N -0.329 5.329 17 C -0.350 4.350 18 H 0.096 0.904 19 C -0.207 4.207 20 N -0.570 5.570 21 Si 0.747 3.253 22 H -0.205 1.205 23 H -0.217 1.217 24 H -0.217 1.217 25 C 0.002 3.998 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.151 0.849 32 H 0.152 0.848 33 H 0.176 0.824 34 H 0.176 0.824 35 H 0.080 0.920 36 H 0.105 0.895 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.128 0.872 41 H 0.035 0.965 42 H 0.063 0.937 43 H 0.046 0.954 44 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -22.565 -10.674 -1.964 25.040 hybrid contribution -0.249 1.658 0.583 1.775 sum -22.814 -9.016 -1.382 24.570 Atomic orbital electron populations 1.21728 0.93874 1.02439 1.02332 1.21276 0.98377 0.91783 1.04194 1.30495 1.26163 1.06558 1.11642 1.07514 0.77349 0.76537 0.75904 1.93589 1.78482 1.73701 1.45773 1.93585 1.78534 1.73740 1.45767 1.30878 1.03769 1.30765 1.13126 1.19064 0.87284 0.84061 0.77210 1.90850 1.60503 1.39217 1.50517 1.47728 1.07817 1.05118 1.71236 1.21901 0.93600 0.89350 1.02465 1.22416 0.77404 1.00772 0.97502 0.87404 1.23422 1.01171 0.98255 0.96393 1.21960 0.89841 1.00949 0.84512 1.44448 1.41457 1.40264 1.06737 1.19112 1.13813 1.09932 0.92179 0.90372 1.24805 0.99244 1.00154 0.96455 1.69782 1.34342 1.41904 1.11013 0.85975 0.79361 0.80806 0.79199 1.20520 1.21683 1.21733 1.21515 0.92392 0.92001 0.93852 0.92241 0.92247 0.91844 0.90011 0.89998 0.84873 0.84840 0.82390 0.82382 0.91995 0.89520 0.91302 0.91769 0.91535 0.87154 0.96522 0.93675 0.95405 0.95454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.67 9.91 37.16 0.37 -0.30 16 2 C -0.12 -0.73 5.94 -26.73 -0.16 -0.89 16 3 C -0.62 -3.13 5.81 37.16 0.22 -2.91 16 4 S 2.45 25.31 3.96 -107.50 -0.43 24.88 16 5 O -0.92 -13.30 17.94 -59.54 -1.07 -14.37 16 6 O -0.92 -13.15 17.95 -59.51 -1.07 -14.22 16 7 C -0.66 -5.63 4.84 36.01 0.17 -5.46 16 8 C 0.54 8.13 7.69 -10.98 -0.08 8.04 16 9 O -0.53 -10.41 14.99 2.57 0.04 -10.37 16 10 N -0.59 -8.80 2.88 -171.83 -0.50 -9.30 16 11 C 0.07 0.76 9.13 59.85 0.55 1.30 16 12 C 0.12 2.27 3.36 -66.10 -0.22 2.05 16 13 H 0.11 2.19 6.99 -51.93 -0.36 1.83 16 14 C -0.15 -2.88 6.61 -24.58 -0.16 -3.04 16 15 C 0.15 3.67 5.89 -2.53 -0.01 3.65 16 16 N -0.60 -15.32 3.39 -170.07 -0.58 -15.90 16 17 C -0.22 -6.13 10.27 -15.06 -0.15 -6.28 16 18 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 19 C -0.01 -0.31 5.49 -17.43 -0.10 -0.40 16 20 N -0.92 -26.53 10.09 55.49 0.56 -25.97 16 21 Si 0.92 21.86 29.55 -169.99 -5.02 16.83 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 25 C 0.13 2.74 6.88 -3.07 -0.02 2.72 16 26 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 27 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.13 0.33 8.14 -51.92 -0.42 -0.09 16 32 H 0.13 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.16 0.72 7.40 -51.92 -0.38 0.34 16 34 H 0.16 0.77 8.11 -51.93 -0.42 0.35 16 35 H 0.06 0.62 7.89 -51.93 -0.41 0.21 16 36 H 0.09 1.03 6.08 -51.93 -0.32 0.72 16 37 H 0.07 0.47 6.44 -51.93 -0.33 0.14 16 38 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.07 1.16 6.09 -51.93 -0.32 0.84 16 40 H 0.11 2.94 5.87 -51.93 -0.30 2.63 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 43 H 0.03 0.56 6.94 -51.93 -0.36 0.20 16 44 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 363.28 15.07 5.47 5.47 Total: -1.00 -38.52 363.28 -9.18 -47.70 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: -6.98 Total: -3.23 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: 0.39 Total: -1.52 kcal Atomic # 7 Polarization: -50.66 SS G_CDS: -0.51 Total: -51.17 kcal Atomic # 8 Polarization: -36.86 SS G_CDS: -2.10 Total: -38.96 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.83 kcal Atomic # 16 Polarization: 25.31 SS G_CDS: -0.43 Total: 24.88 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -38.52 -9.18 -47.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698577587.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.661 kcal (2) G-P(sol) polarization free energy of solvation -38.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds