Wall clock time and date at job start Tue Mar 31 2020 05:24:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.46908 * 2 1 4 4 C 1.52997 * 109.46884 * 240.00271 * 2 1 3 5 5 C 1.53004 * 109.47000 * 174.99897 * 4 2 1 6 6 N 1.46499 * 109.47198 * 179.97438 * 5 4 2 7 7 C 1.36939 * 119.99933 * 180.27608 * 6 5 4 8 8 H 1.08001 * 119.99700 * 359.72658 * 7 6 5 9 9 C 1.38810 * 120.00095 * 179.71972 * 7 6 5 10 10 N 1.31624 * 119.99740 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 120.00044 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47173 * 60.00435 * 11 9 7 13 13 H 1.48497 * 109.47172 * 180.02562 * 11 9 7 14 14 H 1.48506 * 109.47132 * 300.00314 * 11 9 7 15 15 N 1.46496 * 109.46862 * 119.99783 * 2 1 3 16 16 C 1.34771 * 120.00537 * 274.99803 * 15 2 1 17 17 O 1.21287 * 119.99499 * 0.02562 * 16 15 2 18 18 C 1.50699 * 120.00646 * 180.02562 * 16 15 2 19 19 C 1.52998 * 109.47399 * 180.02562 * 18 16 15 20 20 H 1.08995 * 110.28138 * 304.29782 * 19 18 16 21 21 C 1.54170 * 110.31547 * 182.18437 * 19 18 16 22 22 C 1.54021 * 108.62874 * 213.26900 * 21 19 18 23 23 C 1.55046 * 106.69646 * 47.05246 * 22 21 19 24 24 S 1.82914 * 110.31651 * 66.41537 * 19 18 16 25 25 O 1.42102 * 109.35322 * 234.41953 * 24 19 18 26 26 O 1.42097 * 109.35507 * 7.62934 * 24 19 18 27 27 H 1.08996 * 109.47017 * 300.00188 * 1 2 3 28 28 H 1.08999 * 109.47108 * 59.99582 * 1 2 3 29 29 H 1.09001 * 109.46908 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47672 * 55.00228 * 4 2 1 31 31 H 1.09006 * 109.46819 * 294.99658 * 4 2 1 32 32 H 1.09009 * 109.46730 * 59.99606 * 5 4 2 33 33 H 1.08998 * 109.46846 * 300.00150 * 5 4 2 34 34 H 0.97001 * 119.99790 * 359.97438 * 6 5 4 35 35 H 0.96998 * 119.99409 * 179.97438 * 10 9 7 36 36 H 0.97002 * 119.99724 * 95.00245 * 15 2 1 37 37 H 1.09007 * 109.46826 * 300.00909 * 18 16 15 38 38 H 1.09006 * 109.46642 * 59.99863 * 18 16 15 39 39 H 1.08999 * 109.64893 * 333.03943 * 21 19 18 40 40 H 1.08999 * 109.64274 * 93.33909 * 21 19 18 41 41 H 1.09001 * 109.95433 * 287.75816 * 22 21 19 42 42 H 1.08996 * 110.06715 * 166.41145 * 22 21 19 43 43 H 1.09006 * 110.79017 * 199.34299 * 23 22 21 44 44 H 1.08995 * 110.79159 * 75.88239 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5649 -0.6132 -1.3138 6 7 4.0532 -1.3043 -2.5096 7 6 5.3958 -1.3455 -2.7763 8 1 6.0942 -0.8648 -2.1073 9 6 5.8590 -2.0053 -3.9063 10 7 5.0078 -2.5908 -4.7218 11 14 7.6903 -2.0610 -4.2704 12 1 8.3978 -2.7300 -3.1492 13 1 7.9226 -2.8195 -5.5257 14 1 8.2064 -0.6772 -4.4260 15 7 2.0183 -0.6906 1.1962 16 6 2.1471 -0.0183 2.3571 17 8 1.8583 1.1584 2.4116 18 6 2.6499 -0.7285 3.5875 19 6 2.7007 0.2545 4.7589 20 1 3.3092 1.1206 4.4991 21 6 3.2645 -0.4387 6.0152 22 6 2.5816 0.1632 7.2576 23 6 1.0609 0.1978 6.9571 24 16 1.0107 0.7807 5.2201 25 8 0.9378 2.1997 5.2015 26 8 0.0629 0.0116 4.4925 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.6055 -0.2617 -2.1370 31 1 1.7516 -1.7715 -1.2056 32 1 3.9995 -1.0727 -0.4259 33 1 3.8532 0.4371 -1.3573 34 1 3.4259 -1.7364 -3.1102 35 1 5.3315 -3.0515 -5.5116 36 1 2.2490 -1.6317 1.1526 37 1 1.9777 -1.5509 3.8325 38 1 3.6493 -1.1203 3.3978 39 1 3.0594 -1.5081 5.9670 40 1 4.3409 -0.2761 6.0715 41 1 2.9507 1.1739 7.4320 42 1 2.7757 -0.4605 8.1301 43 1 0.5522 0.9014 7.6162 44 1 0.6267 -0.7982 7.0437 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699123382.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:02 Heat of formation + Delta-G solvation = -110.231958 kcal Electronic energy + Delta-G solvation = -25150.871470 eV Core-core repulsion = 21423.356679 eV Total energy + Delta-G solvation = -3727.514791 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.04128 -37.27264 -37.16998 -36.48197 -36.01663 -34.37036 -32.78241 -31.80604 -30.58336 -27.86479 -27.63460 -24.70396 -23.89434 -21.90365 -21.67654 -20.86205 -20.43982 -18.86532 -17.54930 -17.35332 -17.06209 -16.70592 -16.18724 -15.73558 -15.21878 -14.75072 -14.63159 -14.41485 -14.26807 -13.80800 -13.62566 -13.55067 -13.29252 -13.00091 -12.82582 -12.45686 -12.37937 -12.25163 -12.21471 -12.12700 -11.98926 -11.78484 -11.46846 -11.19171 -11.02930 -10.87432 -10.78003 -10.64359 -10.55582 -10.40140 -10.08214 -9.94225 -9.70942 -9.02988 -8.86877 -6.93973 -5.78074 -3.06957 -0.19439 2.35912 2.57277 3.05975 3.37714 3.42606 3.47035 3.48203 3.68906 3.97789 4.07811 4.22644 4.28101 4.48847 4.56222 4.69208 4.79841 4.93890 5.00332 5.03454 5.19325 5.27913 5.30269 5.32227 5.39870 5.40726 5.50243 5.55067 5.76909 5.82503 5.97554 6.09010 6.24865 6.31604 6.38820 6.53854 6.80175 6.86234 7.48217 7.67704 8.15253 8.41090 9.51907 10.09888 10.44594 11.44819 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.021609 B = 0.002663 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.472348 B =10513.123561 C =11397.535461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.143 3.857 3 H 0.090 0.910 4 C -0.135 4.135 5 C 0.154 3.846 6 N -0.734 5.734 7 C -0.241 4.241 8 H 0.069 0.931 9 C -0.014 4.014 10 N -0.934 5.934 11 Si 0.908 3.092 12 H -0.286 1.286 13 H -0.291 1.291 14 H -0.286 1.286 15 N -0.710 5.710 16 C 0.511 3.489 17 O -0.551 6.551 18 C -0.121 4.121 19 C -0.540 4.540 20 H 0.152 0.848 21 C -0.114 4.114 22 C -0.121 4.121 23 C -0.606 4.606 24 S 2.398 3.602 25 O -0.925 6.925 26 O -0.931 6.931 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.057 0.943 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.018 0.982 33 H 0.018 0.982 34 H 0.384 0.616 35 H 0.256 0.744 36 H 0.404 0.596 37 H 0.111 0.889 38 H 0.117 0.883 39 H 0.087 0.913 40 H 0.096 0.904 41 H 0.087 0.913 42 H 0.097 0.903 43 H 0.135 0.865 44 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.018 1.704 26.225 27.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.038 3.962 3 H 0.108 0.892 4 C -0.173 4.173 5 C 0.026 3.974 6 N -0.378 5.378 7 C -0.372 4.372 8 H 0.087 0.913 9 C -0.210 4.210 10 N -0.583 5.583 11 Si 0.739 3.261 12 H -0.213 1.213 13 H -0.216 1.216 14 H -0.213 1.213 15 N -0.360 5.360 16 C 0.297 3.703 17 O -0.430 6.430 18 C -0.162 4.162 19 C -0.649 4.649 20 H 0.170 0.830 21 C -0.152 4.152 22 C -0.159 4.159 23 C -0.734 4.734 24 S 2.579 3.421 25 O -0.922 6.922 26 O -0.928 6.928 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.076 0.924 30 H 0.099 0.901 31 H 0.087 0.913 32 H 0.035 0.965 33 H 0.036 0.964 34 H 0.217 0.783 35 H 0.066 0.934 36 H 0.239 0.761 37 H 0.129 0.871 38 H 0.136 0.864 39 H 0.106 0.894 40 H 0.115 0.885 41 H 0.106 0.894 42 H 0.116 0.884 43 H 0.153 0.847 44 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -8.762 3.019 25.716 27.335 hybrid contribution 1.598 -1.082 -0.055 1.931 sum -7.164 1.937 25.661 26.713 Atomic orbital electron populations 1.22173 0.95183 1.02210 1.02536 1.21044 0.93851 0.97730 0.83529 0.89182 1.22073 0.97975 1.00855 0.96423 1.20638 0.90423 0.95619 0.90685 1.42365 1.05332 1.64940 1.25188 1.19183 0.83811 1.28416 1.05772 0.91322 1.24749 0.97738 1.00855 0.97677 1.69652 1.32880 1.40495 1.15253 0.86254 0.85066 0.77504 0.77271 1.21288 1.21650 1.21251 1.46000 1.66206 1.14230 1.09559 1.20491 0.77450 0.87376 0.85017 1.90746 1.51146 1.15919 1.85195 1.21394 1.05639 0.98296 0.90855 1.30128 1.24030 1.08863 1.01908 0.83041 1.22086 1.02795 1.00861 0.89477 1.22221 0.90181 1.03863 0.99664 1.30813 1.04305 1.13123 1.25180 1.09127 0.78495 0.76254 0.78224 1.93604 1.85885 1.27087 1.85673 1.93581 1.57650 1.72447 1.69119 0.92032 0.91521 0.92419 0.90146 0.91287 0.96468 0.96419 0.78292 0.93440 0.76137 0.87068 0.86441 0.89397 0.88536 0.89442 0.88420 0.84714 0.84573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.12 9.48 37.16 0.35 -1.77 16 2 C 0.14 2.02 2.57 -67.93 -0.17 1.85 16 3 H 0.09 1.43 7.58 -51.93 -0.39 1.03 16 4 C -0.14 -2.10 4.87 -26.73 -0.13 -2.23 16 5 C 0.15 3.06 6.15 -4.04 -0.02 3.04 16 6 N -0.73 -18.60 5.60 -59.90 -0.34 -18.93 16 7 C -0.24 -6.78 9.99 -15.06 -0.15 -6.93 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 10 N -0.93 -28.26 13.06 55.49 0.72 -27.54 16 11 Si 0.91 22.40 29.55 -169.99 -5.02 17.37 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 13 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 14 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 15 N -0.71 -8.98 4.53 -53.81 -0.24 -9.23 16 16 C 0.51 6.76 7.00 -10.99 -0.08 6.68 16 17 O -0.55 -9.29 14.56 5.55 0.08 -9.20 16 18 C -0.12 -1.02 4.73 -27.88 -0.13 -1.15 16 19 C -0.54 -4.24 2.79 -26.12 -0.07 -4.32 16 20 H 0.15 1.27 8.00 -51.93 -0.42 0.85 16 21 C -0.11 -0.47 5.96 -25.59 -0.15 -0.62 16 22 C -0.12 -0.46 6.48 -25.12 -0.16 -0.63 16 23 C -0.61 -3.20 7.31 38.24 0.28 -2.92 16 24 S 2.40 24.85 4.75 -107.50 -0.51 24.34 16 25 O -0.93 -13.60 18.15 -57.71 -1.05 -14.64 16 26 O -0.93 -12.44 16.46 -58.09 -0.96 -13.39 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.02 0.34 7.75 -51.92 -0.40 -0.06 16 33 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.38 10.15 7.67 -40.82 -0.31 9.83 16 35 H 0.26 7.48 8.31 -40.82 -0.34 7.15 16 36 H 0.40 4.21 8.60 -40.82 -0.35 3.85 16 37 H 0.11 0.71 7.85 -51.93 -0.41 0.30 16 38 H 0.12 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.09 0.22 7.86 -51.93 -0.41 -0.18 16 40 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.10 0.21 8.14 -51.93 -0.42 -0.22 16 43 H 0.13 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.14 0.49 8.14 -51.93 -0.42 0.06 16 LS Contribution 369.95 15.07 5.58 5.58 Total: -1.00 -38.62 369.95 -9.59 -48.21 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: -7.31 Total: 6.96 kcal Atomic # 6 Polarization: -8.97 SS G_CDS: -0.54 Total: -9.51 kcal Atomic # 7 Polarization: -55.84 SS G_CDS: 0.15 Total: -55.70 kcal Atomic # 8 Polarization: -35.32 SS G_CDS: -1.92 Total: -37.24 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.37 kcal Atomic # 16 Polarization: 24.85 SS G_CDS: -0.51 Total: 24.34 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -38.62 -9.59 -48.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699123382.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.026 kcal (2) G-P(sol) polarization free energy of solvation -38.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds