Wall clock time and date at job start Tue Mar 31 2020 05:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46773 * 2 1 4 4 C 1.52995 * 109.47548 * 119.99918 * 2 1 3 5 5 C 1.53000 * 109.47400 * 185.00214 * 4 2 1 6 6 N 1.46497 * 109.47144 * 180.02562 * 5 4 2 7 7 C 1.36932 * 119.99747 * 180.02562 * 6 5 4 8 8 H 1.08004 * 120.00528 * 359.97438 * 7 6 5 9 9 C 1.38816 * 119.99921 * 179.97438 * 7 6 5 10 10 N 1.31612 * 120.00006 * 359.97438 * 9 7 6 11 11 Si 1.86809 * 120.00009 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.46783 * 0.02562 * 11 9 7 13 13 H 1.48501 * 109.46741 * 119.99949 * 11 9 7 14 14 H 1.48501 * 109.47232 * 240.00104 * 11 9 7 15 15 N 1.46500 * 109.47146 * 240.00488 * 2 1 3 16 16 C 1.34779 * 120.00165 * 84.99328 * 15 2 1 17 17 O 1.21282 * 119.99927 * 0.02562 * 16 15 2 18 18 C 1.50699 * 120.00033 * 179.97438 * 16 15 2 19 19 C 1.53006 * 109.46866 * 180.02562 * 18 16 15 20 20 H 1.08997 * 110.28207 * 304.29745 * 19 18 16 21 21 C 1.54169 * 110.31467 * 182.18207 * 19 18 16 22 22 C 1.54017 * 108.63039 * 213.26534 * 21 19 18 23 23 C 1.55056 * 106.69531 * 47.05424 * 22 21 19 24 24 S 1.82921 * 110.31966 * 66.41446 * 19 18 16 25 25 O 1.42098 * 109.35061 * 234.42383 * 24 19 18 26 26 O 1.42099 * 109.35262 * 7.62594 * 24 19 18 27 27 H 1.09001 * 109.46947 * 299.99526 * 1 2 3 28 28 H 1.08999 * 109.47584 * 59.99937 * 1 2 3 29 29 H 1.09006 * 109.46479 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47558 * 305.00548 * 4 2 1 31 31 H 1.09009 * 109.46952 * 65.00379 * 4 2 1 32 32 H 1.09005 * 109.47009 * 300.00439 * 5 4 2 33 33 H 1.08998 * 109.46746 * 59.99722 * 5 4 2 34 34 H 0.97002 * 120.00193 * 359.97438 * 6 5 4 35 35 H 0.97006 * 120.00163 * 179.97438 * 10 9 7 36 36 H 0.96996 * 119.99985 * 264.99903 * 15 2 1 37 37 H 1.08993 * 109.47512 * 60.00410 * 18 16 15 38 38 H 1.09000 * 109.47247 * 300.00119 * 18 16 15 39 39 H 1.08991 * 109.64788 * 333.04366 * 21 19 18 40 40 H 1.09007 * 109.64365 * 93.33942 * 21 19 18 41 41 H 1.08998 * 109.95409 * 287.76297 * 22 21 19 42 42 H 1.09002 * 110.07000 * 166.40901 * 22 21 19 43 43 H 1.08994 * 110.78665 * 199.33981 * 23 22 21 44 44 H 1.09000 * 110.78825 * 75.87658 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5649 -0.6132 1.3136 6 7 4.0533 -1.3043 2.5094 7 6 5.3953 -1.3402 2.7793 8 1 6.0938 -0.8594 2.1103 9 6 5.8581 -1.9946 3.9126 10 7 5.0070 -2.5800 4.7281 11 14 7.6890 -2.0442 4.2804 12 1 8.4272 -1.3161 3.2173 13 1 7.9479 -1.3992 5.5927 14 1 8.1471 -3.4561 4.3238 15 7 2.0184 -0.6905 -1.1962 16 6 2.1470 -0.0181 -2.3572 17 8 1.8589 1.1587 -2.4115 18 6 2.6499 -0.7283 -3.5876 19 6 2.7016 0.2551 -4.7586 20 1 1.7242 0.7127 -4.9112 21 6 3.1621 -0.4646 -6.0419 22 6 3.9799 0.5240 -6.8940 23 6 4.9878 1.2099 -5.9360 24 16 3.9648 1.5421 -4.4519 25 8 3.3671 2.8259 -4.5697 26 8 4.7044 1.2076 -3.2856 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3632 -1.0278 -0.0005 30 1 1.6055 -0.2618 2.1369 31 1 1.7518 -1.7716 1.2055 32 1 3.9996 -1.0726 0.4258 33 1 3.8532 0.4371 1.3572 34 1 3.4261 -1.7358 3.1105 35 1 5.3305 -3.0377 5.5200 36 1 2.2491 -1.6316 -1.1527 37 1 1.9778 -1.5506 -3.8327 38 1 3.6492 -1.1200 -3.3980 39 1 3.7824 -1.3214 -5.7791 40 1 2.2920 -0.8034 -6.6044 41 1 3.3187 1.2693 -7.3361 42 1 4.5152 -0.0117 -7.6779 43 1 5.3588 2.1401 -6.3663 44 1 5.8116 0.5379 -5.6955 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699123383.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:04 Heat of formation + Delta-G solvation = -109.062298 kcal Electronic energy + Delta-G solvation = -25327.329380 eV Core-core repulsion = 21599.865310 eV Total energy + Delta-G solvation = -3727.464070 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.04361 -37.25086 -37.08613 -36.46087 -35.93462 -34.33208 -32.76521 -31.77073 -30.57077 -27.85189 -27.61989 -24.68166 -23.86185 -21.88170 -21.64743 -20.82901 -20.44339 -18.78740 -17.51583 -17.33508 -17.00590 -16.65234 -16.20506 -15.56088 -15.31782 -14.73487 -14.58692 -14.31633 -14.19538 -13.80625 -13.65965 -13.49073 -13.27181 -12.98140 -12.83069 -12.49281 -12.31198 -12.21743 -12.13284 -12.06797 -11.95789 -11.81624 -11.44781 -11.17552 -10.99076 -10.80330 -10.76088 -10.60300 -10.52448 -10.35584 -9.97876 -9.93183 -9.65713 -9.03701 -8.82225 -6.87692 -5.72808 -3.00997 -0.12565 2.41615 2.57556 3.06127 3.44207 3.46562 3.52624 3.55326 3.73432 4.02735 4.10863 4.26392 4.32139 4.52364 4.61196 4.69045 4.81569 4.99083 5.00851 5.04918 5.18512 5.26756 5.28968 5.35432 5.38934 5.40332 5.51324 5.59413 5.74549 5.77575 5.96281 6.06215 6.26750 6.31305 6.38672 6.53784 6.89434 6.93085 7.47816 7.76831 8.14915 8.46538 9.57676 10.15485 10.50468 11.50335 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.014844 B = 0.003189 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.780930 B = 8778.066193 C = 9956.660016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.141 3.859 3 H 0.091 0.909 4 C -0.134 4.134 5 C 0.152 3.848 6 N -0.734 5.734 7 C -0.236 4.236 8 H 0.071 0.929 9 C -0.016 4.016 10 N -0.935 5.935 11 Si 0.906 3.094 12 H -0.280 1.280 13 H -0.292 1.292 14 H -0.292 1.292 15 N -0.710 5.710 16 C 0.511 3.489 17 O -0.551 6.551 18 C -0.121 4.121 19 C -0.542 4.542 20 H 0.150 0.850 21 C -0.113 4.113 22 C -0.121 4.121 23 C -0.607 4.607 24 S 2.397 3.603 25 O -0.926 6.926 26 O -0.923 6.923 27 H 0.067 0.933 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.021 0.979 33 H 0.020 0.980 34 H 0.383 0.617 35 H 0.254 0.746 36 H 0.404 0.596 37 H 0.114 0.886 38 H 0.114 0.886 39 H 0.088 0.912 40 H 0.094 0.906 41 H 0.086 0.914 42 H 0.097 0.903 43 H 0.135 0.865 44 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.750 1.826 -26.256 27.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.037 3.963 3 H 0.109 0.891 4 C -0.173 4.173 5 C 0.024 3.976 6 N -0.378 5.378 7 C -0.367 4.367 8 H 0.089 0.911 9 C -0.212 4.212 10 N -0.585 5.585 11 Si 0.738 3.262 12 H -0.205 1.205 13 H -0.219 1.219 14 H -0.219 1.219 15 N -0.360 5.360 16 C 0.297 3.703 17 O -0.430 6.430 18 C -0.162 4.162 19 C -0.651 4.651 20 H 0.168 0.832 21 C -0.152 4.152 22 C -0.159 4.159 23 C -0.735 4.735 24 S 2.577 3.423 25 O -0.923 6.923 26 O -0.920 6.920 27 H 0.086 0.914 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.098 0.902 31 H 0.086 0.914 32 H 0.039 0.961 33 H 0.038 0.962 34 H 0.216 0.784 35 H 0.064 0.936 36 H 0.239 0.761 37 H 0.132 0.868 38 H 0.132 0.868 39 H 0.106 0.894 40 H 0.113 0.887 41 H 0.105 0.895 42 H 0.115 0.885 43 H 0.153 0.847 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -7.674 3.359 -25.558 26.896 hybrid contribution 0.843 -1.271 -0.113 1.529 sum -6.831 2.089 -25.671 26.646 Atomic orbital electron populations 1.22161 0.95347 1.01944 1.02404 1.21055 0.93563 0.98014 0.83674 0.89064 1.22064 0.98190 1.00686 0.96311 1.20662 0.90256 0.95858 0.90786 1.42375 1.05387 1.64919 1.25162 1.19320 0.83888 1.28093 1.05417 0.91083 1.24738 0.97713 1.01041 0.97681 1.69670 1.32662 1.40970 1.15170 0.86113 0.85153 0.77155 0.77814 1.20488 1.21881 1.21908 1.45996 1.66267 1.14293 1.09436 1.20500 0.77377 0.87450 0.85022 1.90745 1.51200 1.15822 1.85199 1.21391 1.05525 0.98786 0.90473 1.30137 1.18703 1.14504 1.01734 0.83234 1.22077 1.01378 0.98812 0.92884 1.22215 0.96222 0.99034 0.98433 1.30828 1.12062 1.10785 1.19828 1.09204 0.78325 0.77391 0.77373 1.93597 1.76036 1.35969 1.86699 1.93637 1.69945 1.84687 1.43748 0.91421 0.92407 0.92538 0.90193 0.91364 0.96132 0.96215 0.78376 0.93642 0.76140 0.86765 0.86798 0.89361 0.88736 0.89522 0.88450 0.84693 0.84447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.90 9.48 37.16 0.35 -1.55 16 2 C 0.14 2.00 2.57 -67.93 -0.17 1.82 16 3 H 0.09 1.50 7.58 -51.93 -0.39 1.11 16 4 C -0.13 -2.13 4.87 -26.73 -0.13 -2.26 16 5 C 0.15 3.18 6.15 -4.04 -0.02 3.15 16 6 N -0.73 -19.10 5.60 -59.91 -0.34 -19.44 16 7 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 8 H 0.07 2.03 7.83 -52.48 -0.41 1.62 16 9 C -0.02 -0.48 5.50 -17.43 -0.10 -0.57 16 10 N -0.94 -28.70 13.06 55.49 0.72 -27.98 16 11 Si 0.91 22.92 29.55 -169.99 -5.02 17.90 16 12 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 13 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 14 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 15 N -0.71 -8.95 4.53 -53.81 -0.24 -9.19 16 16 C 0.51 6.74 7.00 -10.99 -0.08 6.66 16 17 O -0.55 -9.26 14.56 5.56 0.08 -9.18 16 18 C -0.12 -1.02 4.74 -27.88 -0.13 -1.15 16 19 C -0.54 -4.27 2.79 -26.12 -0.07 -4.34 16 20 H 0.15 1.17 8.00 -51.93 -0.42 0.75 16 21 C -0.11 -0.47 5.96 -25.59 -0.15 -0.62 16 22 C -0.12 -0.51 6.48 -25.11 -0.16 -0.67 16 23 C -0.61 -3.82 7.31 38.24 0.28 -3.54 16 24 S 2.40 27.43 4.75 -107.50 -0.51 26.92 16 25 O -0.93 -14.29 18.15 -57.71 -1.05 -15.34 16 26 O -0.92 -14.37 16.45 -58.11 -0.96 -15.33 16 27 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.07 1.02 8.14 -51.92 -0.42 0.60 16 32 H 0.02 0.43 7.75 -51.93 -0.40 0.03 16 33 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.38 10.29 7.67 -40.82 -0.31 9.98 16 35 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 36 H 0.40 4.18 8.60 -40.82 -0.35 3.83 16 37 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.11 0.85 7.85 -51.93 -0.41 0.44 16 39 H 0.09 0.25 7.86 -51.93 -0.41 -0.16 16 40 H 0.09 0.24 8.14 -51.92 -0.42 -0.18 16 41 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 43 H 0.13 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.14 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 369.95 15.07 5.58 5.58 Total: -1.00 -39.72 369.95 -9.59 -49.30 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -7.31 Total: 6.82 kcal Atomic # 6 Polarization: -9.51 SS G_CDS: -0.54 Total: -10.05 kcal Atomic # 7 Polarization: -56.76 SS G_CDS: 0.15 Total: -56.61 kcal Atomic # 8 Polarization: -37.93 SS G_CDS: -1.92 Total: -39.85 kcal Atomic # 14 Polarization: 22.92 SS G_CDS: -5.02 Total: 17.90 kcal Atomic # 16 Polarization: 27.43 SS G_CDS: -0.51 Total: 26.92 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -39.72 -9.59 -49.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699123383.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.758 kcal (2) G-P(sol) polarization free energy of solvation -39.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds