Wall clock time and date at job start Tue Mar 31 2020 05:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.53002 * 109.47233 * 120.00174 * 2 1 3 5 5 C 1.52997 * 109.47469 * 184.99697 * 4 2 1 6 6 N 1.46497 * 109.47480 * 179.97438 * 5 4 2 7 7 C 1.36930 * 120.00379 * 179.97438 * 6 5 4 8 8 H 1.08009 * 119.99520 * 0.02562 * 7 6 5 9 9 C 1.38812 * 120.00569 * 180.02562 * 7 6 5 10 10 N 1.31622 * 119.99505 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 120.00455 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47016 * 89.99758 * 11 9 7 13 13 H 1.48498 * 109.47164 * 210.00427 * 11 9 7 14 14 H 1.48497 * 109.47126 * 330.00578 * 11 9 7 15 15 N 1.46499 * 109.46840 * 239.99674 * 2 1 3 16 16 C 1.34781 * 119.99874 * 85.00543 * 15 2 1 17 17 O 1.21278 * 120.00033 * 359.97438 * 16 15 2 18 18 C 1.50703 * 120.00101 * 179.97438 * 16 15 2 19 19 C 1.52996 * 109.47006 * 179.97438 * 18 16 15 20 20 H 1.08993 * 110.70455 * 55.70308 * 19 18 16 21 21 C 1.55051 * 110.78925 * 179.02506 * 19 18 16 22 22 C 1.54041 * 106.54288 * 160.52768 * 21 19 18 23 23 C 1.54164 * 108.85206 * 313.10685 * 22 21 19 24 24 S 1.82917 * 105.08637 * 27.78587 * 23 22 21 25 25 O 1.42095 * 109.35141 * 244.47661 * 24 23 22 26 26 O 1.42105 * 109.47198 * 111.31171 * 24 23 22 27 27 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 29 29 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 30 30 H 1.09008 * 109.46873 * 304.99791 * 4 2 1 31 31 H 1.08997 * 109.47047 * 64.99480 * 4 2 1 32 32 H 1.08997 * 109.47151 * 300.00410 * 5 4 2 33 33 H 1.09006 * 109.46918 * 59.99351 * 5 4 2 34 34 H 0.96996 * 119.99359 * 0.02562 * 6 5 4 35 35 H 0.96997 * 119.99801 * 180.02562 * 10 9 7 36 36 H 0.97002 * 120.00410 * 264.99761 * 15 2 1 37 37 H 1.09002 * 109.46880 * 299.99754 * 18 16 15 38 38 H 1.09003 * 109.46851 * 59.99965 * 18 16 15 39 39 H 1.09003 * 110.02154 * 279.99492 * 21 19 18 40 40 H 1.08995 * 110.02978 * 41.40902 * 21 19 18 41 41 H 1.09004 * 109.67111 * 193.14646 * 22 21 19 42 42 H 1.09001 * 109.36299 * 72.87831 * 22 21 19 43 43 H 1.09005 * 110.31689 * 268.88313 * 23 22 21 44 44 H 1.09002 * 110.40596 * 146.73764 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.6134 1.3137 6 7 4.0531 -1.3035 2.5101 7 6 5.3952 -1.3403 2.7796 8 1 6.0937 -0.8602 2.1102 9 6 5.8579 -1.9947 3.9130 10 7 5.0067 -2.5802 4.7284 11 14 7.6886 -2.0442 4.2809 12 1 8.0586 -0.8698 5.1110 13 1 8.0119 -3.2926 5.0173 14 1 8.4507 -2.0096 3.0069 15 7 2.0183 -0.6907 -1.1961 16 6 2.1470 -0.0183 -2.3572 17 8 1.8583 1.1583 -2.4117 18 6 2.6499 -0.7286 -3.5875 19 6 2.7007 0.2543 -4.7588 20 1 3.3079 1.1235 -4.5064 21 6 3.2380 -0.4399 -6.0369 22 6 2.7970 0.4318 -7.2279 23 6 1.3062 0.7870 -7.0602 24 16 1.0112 0.7628 -5.2551 25 8 0.0951 -0.2772 -4.9417 26 8 0.7640 2.0854 -4.7978 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.6054 -0.2617 2.1370 31 1 1.7516 -1.7715 1.2056 32 1 3.9994 -1.0729 0.4260 33 1 3.8533 0.4369 1.3572 34 1 3.4258 -1.7350 3.1110 35 1 5.3300 -3.0371 5.5206 36 1 2.2490 -1.6319 -1.1526 37 1 3.6492 -1.1205 -3.3979 38 1 1.9776 -1.5509 -3.8325 39 1 4.3255 -0.5027 -5.9983 40 1 2.8091 -1.4378 -6.1281 41 1 2.9404 -0.1181 -8.1581 42 1 3.3914 1.3452 -7.2469 43 1 0.6819 0.0434 -7.5558 44 1 1.1042 1.7793 -7.4636 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699123384.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:06 Heat of formation + Delta-G solvation = -109.726262 kcal Electronic energy + Delta-G solvation = -25109.875309 eV Core-core repulsion = 21382.382447 eV Total energy + Delta-G solvation = -3727.492862 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.02788 -37.34458 -37.03285 -36.49139 -36.01249 -34.37237 -32.83199 -31.81109 -30.59034 -27.87677 -27.65241 -24.70954 -23.90236 -21.90220 -21.63655 -20.85887 -20.43095 -18.89693 -17.54179 -17.31881 -16.99459 -16.69445 -16.10882 -15.89226 -15.16080 -14.82911 -14.60224 -14.44790 -14.28138 -13.81456 -13.60393 -13.55703 -13.29672 -12.97300 -12.84051 -12.47307 -12.38931 -12.25884 -12.21631 -12.10203 -11.97201 -11.79206 -11.43943 -11.19875 -11.03777 -10.88064 -10.79260 -10.63786 -10.56363 -10.37730 -10.05856 -9.90923 -9.71379 -9.03460 -8.87354 -6.93962 -5.78239 -3.07055 -0.19452 2.35562 2.53193 3.05299 3.35689 3.42285 3.47239 3.48889 3.71345 3.98087 4.07831 4.21498 4.31257 4.48519 4.56037 4.67547 4.77488 4.91135 5.00734 5.09250 5.20128 5.28489 5.30961 5.32902 5.38787 5.39318 5.51194 5.54854 5.75561 5.80409 5.96347 6.07256 6.24249 6.30854 6.36322 6.52868 6.80152 6.85930 7.47239 7.68121 8.14517 8.40880 9.51814 10.09786 10.44471 11.44738 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.021464 B = 0.002653 C = 0.002445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.209298 B =10550.152581 C =11450.512141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.143 3.857 3 H 0.091 0.909 4 C -0.135 4.135 5 C 0.154 3.846 6 N -0.734 5.734 7 C -0.240 4.240 8 H 0.069 0.931 9 C -0.015 4.015 10 N -0.934 5.934 11 Si 0.908 3.092 12 H -0.290 1.290 13 H -0.291 1.291 14 H -0.282 1.282 15 N -0.711 5.711 16 C 0.498 3.502 17 O -0.537 6.537 18 C -0.124 4.124 19 C -0.534 4.534 20 H 0.152 0.848 21 C -0.120 4.120 22 C -0.114 4.114 23 C -0.609 4.609 24 S 2.392 3.608 25 O -0.937 6.937 26 O -0.914 6.914 27 H 0.057 0.943 28 H 0.067 0.933 29 H 0.059 0.941 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.018 0.982 33 H 0.018 0.982 34 H 0.384 0.616 35 H 0.255 0.745 36 H 0.404 0.596 37 H 0.118 0.882 38 H 0.113 0.887 39 H 0.101 0.899 40 H 0.088 0.912 41 H 0.092 0.908 42 H 0.085 0.915 43 H 0.134 0.866 44 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.548 2.933 -26.367 27.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.038 3.962 3 H 0.109 0.891 4 C -0.173 4.173 5 C 0.026 3.974 6 N -0.378 5.378 7 C -0.371 4.371 8 H 0.087 0.913 9 C -0.211 4.211 10 N -0.583 5.583 11 Si 0.739 3.261 12 H -0.217 1.217 13 H -0.217 1.217 14 H -0.208 1.208 15 N -0.362 5.362 16 C 0.283 3.717 17 O -0.415 6.415 18 C -0.165 4.165 19 C -0.644 4.644 20 H 0.170 0.830 21 C -0.159 4.159 22 C -0.152 4.152 23 C -0.737 4.737 24 S 2.572 3.428 25 O -0.934 6.934 26 O -0.911 6.911 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.099 0.901 31 H 0.087 0.913 32 H 0.036 0.964 33 H 0.036 0.964 34 H 0.217 0.783 35 H 0.065 0.935 36 H 0.239 0.761 37 H 0.136 0.864 38 H 0.131 0.869 39 H 0.120 0.880 40 H 0.107 0.893 41 H 0.110 0.890 42 H 0.104 0.896 43 H 0.153 0.847 44 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -8.396 4.004 -25.873 27.495 hybrid contribution 1.678 -0.834 0.028 1.874 sum -6.718 3.170 -25.846 26.892 Atomic orbital electron populations 1.22179 0.95265 1.02187 1.02528 1.21048 0.93770 0.97799 0.83570 0.89107 1.22071 0.97997 1.00850 0.96399 1.20635 0.90406 0.95622 0.90697 1.42369 1.05384 1.64979 1.25103 1.19225 0.83840 1.28474 1.05545 0.91271 1.24750 0.97747 1.00895 0.97670 1.69661 1.32813 1.40699 1.15094 0.86178 0.85028 0.77049 0.77865 1.21690 1.21747 1.20790 1.46048 1.66331 1.14284 1.09547 1.20659 0.78123 0.87668 0.85212 1.90843 1.50332 1.15333 1.85029 1.21383 1.05924 0.98411 0.90764 1.30248 1.23962 1.08629 1.01555 0.83000 1.22390 1.04511 0.99381 0.89581 1.21901 0.91572 1.01640 1.00084 1.30663 1.05439 1.11214 1.26375 1.09293 0.78697 0.76118 0.78661 1.93587 1.59072 1.58246 1.82463 1.93634 1.83506 1.36232 1.77776 0.92385 0.91400 0.92229 0.90142 0.91283 0.96439 0.96419 0.78298 0.93494 0.76122 0.86361 0.86884 0.88020 0.89300 0.88951 0.89644 0.84741 0.84574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.10 9.48 37.16 0.35 -1.75 16 2 C 0.14 2.00 2.57 -67.93 -0.17 1.83 16 3 H 0.09 1.43 7.58 -51.93 -0.39 1.04 16 4 C -0.13 -2.10 4.87 -26.73 -0.13 -2.23 16 5 C 0.15 3.06 6.15 -4.04 -0.02 3.04 16 6 N -0.73 -18.59 5.60 -59.91 -0.34 -18.92 16 7 C -0.24 -6.75 9.99 -15.06 -0.15 -6.90 16 8 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 9 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 10 N -0.93 -28.27 13.06 55.49 0.72 -27.55 16 11 Si 0.91 22.40 29.55 -169.99 -5.02 17.38 16 12 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 13 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 14 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 15 N -0.71 -8.95 4.53 -53.80 -0.24 -9.19 16 16 C 0.50 6.55 7.57 -10.98 -0.08 6.47 16 17 O -0.54 -9.00 14.02 -7.16 -0.10 -9.10 16 18 C -0.12 -1.07 5.05 -27.88 -0.14 -1.21 16 19 C -0.53 -4.19 2.70 -25.65 -0.07 -4.26 16 20 H 0.15 1.21 8.01 -51.93 -0.42 0.79 16 21 C -0.12 -0.51 5.93 -25.10 -0.15 -0.66 16 22 C -0.11 -0.43 6.39 -25.58 -0.16 -0.60 16 23 C -0.61 -3.31 7.27 37.77 0.27 -3.03 16 24 S 2.39 24.61 4.88 -107.50 -0.52 24.09 16 25 O -0.94 -12.12 17.26 -57.73 -1.00 -13.11 16 26 O -0.91 -13.67 17.25 -63.62 -1.10 -14.77 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.08 1.26 8.14 -51.92 -0.42 0.84 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.02 0.34 7.75 -51.93 -0.40 -0.06 16 33 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.38 10.14 7.67 -40.82 -0.31 9.83 16 35 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 36 H 0.40 4.21 8.60 -40.82 -0.35 3.86 16 37 H 0.12 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.11 0.80 7.65 -51.93 -0.40 0.40 16 39 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.09 0.27 8.08 -51.93 -0.42 -0.15 16 41 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 42 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 43 H 0.13 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.14 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 370.13 15.07 5.58 5.58 Total: -1.00 -38.53 370.13 -9.89 -48.42 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -7.31 Total: 7.00 kcal Atomic # 6 Polarization: -9.26 SS G_CDS: -0.56 Total: -9.81 kcal Atomic # 7 Polarization: -55.81 SS G_CDS: 0.15 Total: -55.66 kcal Atomic # 8 Polarization: -34.79 SS G_CDS: -2.19 Total: -36.98 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Atomic # 16 Polarization: 24.61 SS G_CDS: -0.52 Total: 24.09 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -38.53 -9.89 -48.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699123384.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.310 kcal (2) G-P(sol) polarization free energy of solvation -38.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds