Wall clock time and date at job start Tue Mar 31 2020 05:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 110.88571 * 2 1 4 4 C 1.55128 * 111.22323 * 236.09098 * 2 1 3 5 5 N 1.47421 * 104.72356 * 279.17697 * 4 2 1 6 6 C 1.34774 * 125.65117 * 155.81845 * 5 4 2 7 7 O 1.21284 * 120.00066 * 179.69236 * 6 5 4 8 8 C 1.50696 * 119.99838 * 359.69299 * 6 5 4 9 9 C 1.53005 * 109.47353 * 180.02562 * 8 6 5 10 10 S 1.81399 * 109.47445 * 179.97438 * 9 8 6 11 11 C 1.81393 * 101.92117 * 179.97438 * 10 9 8 12 12 O 1.42096 * 108.57743 * 294.48510 * 10 9 8 13 13 O 1.42105 * 108.57596 * 65.51091 * 10 9 8 14 14 C 1.47025 * 108.70250 * 335.55230 * 5 4 2 15 15 C 1.54323 * 107.26893 * 1.28777 * 14 5 4 16 16 H 1.08997 * 110.72058 * 263.82681 * 15 14 5 17 17 C 1.53005 * 110.71986 * 140.73147 * 15 14 5 18 18 N 1.46503 * 109.47068 * 66.45411 * 17 15 14 19 19 C 1.36934 * 120.00281 * 180.02562 * 18 17 15 20 20 H 1.08001 * 119.99544 * 359.97438 * 19 18 17 21 21 C 1.38806 * 120.00310 * 179.97438 * 19 18 17 22 22 N 1.31625 * 119.99760 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00241 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47132 * 89.99838 * 23 21 19 25 25 H 1.48500 * 109.47496 * 210.00187 * 23 21 19 26 26 H 1.48506 * 109.46977 * 330.00002 * 23 21 19 27 27 H 1.09005 * 109.47277 * 296.11827 * 1 2 3 28 28 H 1.09005 * 109.47272 * 56.11367 * 1 2 3 29 29 H 1.09000 * 109.47210 * 176.11955 * 1 2 3 30 30 H 1.09005 * 110.49469 * 160.33460 * 4 2 1 31 31 H 1.09003 * 110.34508 * 37.94287 * 4 2 1 32 32 H 1.09001 * 109.47328 * 60.00142 * 8 6 5 33 33 H 1.09004 * 109.47043 * 299.99952 * 8 6 5 34 34 H 1.09001 * 109.46962 * 59.99704 * 9 8 6 35 35 H 1.09004 * 109.46832 * 299.99868 * 9 8 6 36 36 H 1.09002 * 109.47608 * 60.00113 * 11 10 9 37 37 H 1.09002 * 109.47388 * 179.97438 * 11 10 9 38 38 H 1.09000 * 109.47386 * 299.99782 * 11 10 9 39 39 H 1.08999 * 109.88145 * 120.70376 * 14 5 4 40 40 H 1.08999 * 109.88659 * 241.87121 * 14 5 4 41 41 H 1.08998 * 109.47048 * 186.45008 * 17 15 14 42 42 H 1.08997 * 109.47027 * 306.45598 * 17 15 14 43 43 H 0.97002 * 119.99550 * 359.97438 * 18 17 15 44 44 H 0.97002 * 119.99367 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0916 -0.8067 -1.2001 5 7 2.0152 -2.2157 -0.7731 6 6 1.9493 -3.2827 -1.5937 7 8 1.8951 -4.4021 -1.1298 8 6 1.9427 -3.0851 -3.0876 9 6 1.8620 -4.4462 -3.7819 10 16 1.8533 -4.2082 -5.5802 11 6 1.7560 -5.9161 -6.1836 12 8 0.6576 -3.5310 -5.9415 13 8 3.1055 -3.6614 -5.9704 14 6 2.0294 -2.2643 0.6963 15 6 2.0862 -0.8075 1.2024 16 1 3.1131 -0.5151 1.4215 17 6 1.1994 -0.6282 2.4363 18 7 1.7523 -1.4009 3.5515 19 6 1.1233 -1.3939 4.7678 20 1 0.2197 -0.8185 4.9051 21 6 1.6469 -2.1264 5.8242 22 7 2.7478 -2.8281 5.6567 23 14 0.7892 -2.1163 7.4836 24 1 -0.2026 -3.2203 7.5349 25 1 1.7937 -2.3029 8.5613 26 1 0.0945 -0.8176 7.6738 27 1 -0.3634 0.4524 0.9228 28 1 -0.3634 0.5730 -0.8531 29 1 -0.3634 -1.0253 -0.0695 30 1 3.1260 -0.5258 -1.3982 31 1 1.4774 -0.6450 -2.0860 32 1 2.8576 -2.5759 -3.3908 33 1 1.0802 -2.4816 -3.3705 34 1 0.9469 -4.9549 -3.4786 35 1 2.7243 -5.0500 -3.4990 36 1 0.8444 -6.3823 -5.8095 37 1 1.7426 -5.9161 -7.2735 38 1 2.6218 -6.4762 -5.8305 39 1 1.1229 -2.7481 1.0599 40 1 2.9074 -2.8108 1.0407 41 1 1.1636 0.4268 2.7078 42 1 0.1922 -0.9807 2.2142 43 1 2.5637 -1.9180 3.4280 44 1 3.1139 -3.3397 6.3951 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699966051.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:29 Heat of formation + Delta-G solvation = -95.329764 kcal Electronic energy + Delta-G solvation = -24908.297286 eV Core-core repulsion = 21181.428703 eV Total energy + Delta-G solvation = -3726.868583 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.28916 -38.16607 -37.36824 -36.42765 -34.70653 -33.50657 -32.71906 -31.16660 -30.09269 -29.12006 -26.91522 -26.13813 -24.46996 -22.97541 -21.66506 -19.30502 -19.28775 -19.21646 -17.78837 -16.97060 -16.82683 -16.53129 -16.35449 -16.00217 -15.44712 -15.10159 -14.79566 -14.13401 -13.77098 -13.73884 -13.64111 -13.55170 -13.21779 -13.06444 -12.85402 -12.62756 -12.47223 -12.37962 -12.29977 -12.19927 -11.89882 -11.80791 -11.58024 -11.48889 -11.05023 -11.02485 -10.84949 -10.56689 -10.47587 -10.33433 -10.00126 -9.88273 -9.68393 -8.88100 -8.58847 -6.93228 -5.76682 -3.05837 -0.45938 2.29443 2.56128 2.86698 3.26419 3.43786 3.48609 3.50399 3.60073 4.05829 4.30141 4.31489 4.36509 4.46280 4.56254 4.58919 4.80668 4.88680 4.99410 5.13531 5.19841 5.28122 5.38614 5.39812 5.44311 5.52965 5.59207 5.76873 5.82646 5.98022 6.02924 6.15416 6.24420 6.33419 6.36023 6.43768 6.67296 6.81838 7.50921 7.69322 8.10761 8.41814 9.53019 10.09951 10.44136 11.46107 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.024610 B = 0.002473 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.484937 B =11318.202010 C =11950.711257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.097 4.097 3 H 0.092 0.908 4 C 0.097 3.903 5 N -0.614 5.614 6 C 0.532 3.468 7 O -0.537 6.537 8 C -0.129 4.129 9 C -0.595 4.595 10 S 2.421 3.579 11 C -0.654 4.654 12 O -0.939 6.939 13 O -0.939 6.939 14 C 0.118 3.882 15 C -0.102 4.102 16 H 0.085 0.915 17 C 0.163 3.837 18 N -0.734 5.734 19 C -0.240 4.240 20 H 0.070 0.930 21 C -0.014 4.014 22 N -0.932 5.932 23 Si 0.907 3.093 24 H -0.290 1.290 25 H -0.291 1.291 26 H -0.282 1.282 27 H 0.068 0.932 28 H 0.052 0.948 29 H 0.056 0.944 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.141 0.859 35 H 0.141 0.859 36 H 0.130 0.870 37 H 0.129 0.871 38 H 0.130 0.870 39 H 0.076 0.924 40 H 0.070 0.930 41 H 0.023 0.977 42 H 0.026 0.974 43 H 0.384 0.616 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.429 -0.177 -25.114 25.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.117 4.117 3 H 0.110 0.890 4 C -0.026 4.026 5 N -0.348 5.348 6 C 0.318 3.682 7 O -0.414 6.414 8 C -0.170 4.170 9 C -0.724 4.724 10 S 2.604 3.396 11 C -0.804 4.804 12 O -0.936 6.936 13 O -0.936 6.936 14 C -0.004 4.004 15 C -0.121 4.121 16 H 0.104 0.896 17 C 0.036 3.964 18 N -0.378 5.378 19 C -0.372 4.372 20 H 0.088 0.912 21 C -0.210 4.210 22 N -0.581 5.581 23 Si 0.738 3.262 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.208 1.208 27 H 0.087 0.913 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.091 0.909 31 H 0.095 0.905 32 H 0.127 0.873 33 H 0.127 0.873 34 H 0.159 0.841 35 H 0.159 0.841 36 H 0.149 0.851 37 H 0.148 0.852 38 H 0.149 0.851 39 H 0.095 0.905 40 H 0.088 0.912 41 H 0.041 0.959 42 H 0.044 0.956 43 H 0.217 0.783 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -1.542 -0.037 -25.271 25.318 hybrid contribution -0.123 -1.052 1.419 1.770 sum -1.665 -1.089 -23.852 23.935 Atomic orbital electron populations 1.21791 0.94032 1.02198 1.02123 1.22370 0.96673 0.99017 0.93640 0.89010 1.22566 1.01075 0.80772 0.98177 1.48548 1.72309 1.06125 1.07835 1.19803 0.76874 0.83760 0.87732 1.90732 1.50029 1.23207 1.77390 1.21327 1.05962 0.95768 0.93954 1.30158 1.13255 1.05705 1.23307 1.07801 0.75342 0.78202 0.78293 1.30239 1.11886 1.25029 1.13256 1.93609 1.47873 1.70709 1.81435 1.93610 1.43525 1.75751 1.80749 1.22051 1.03172 0.97707 0.77485 1.22496 1.01187 0.93177 0.95237 0.89642 1.20709 0.94584 0.95221 0.85926 1.42378 1.30988 1.56851 1.07564 1.19199 1.06117 1.23991 0.87848 0.91189 1.24749 0.97809 1.00081 0.98320 1.69664 1.22048 1.34719 1.31659 0.86188 0.78415 0.77592 0.83969 1.21720 1.21777 1.20772 0.91263 0.92861 0.92464 0.90910 0.90508 0.87293 0.87301 0.84110 0.84100 0.85146 0.85196 0.85137 0.90529 0.91154 0.95883 0.95627 0.78288 0.93489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 8.16 37.16 0.30 -1.29 16 2 C -0.10 -1.08 3.54 -88.36 -0.31 -1.39 16 3 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 4 C 0.10 0.96 6.17 -2.41 -0.01 0.95 16 5 N -0.61 -8.21 3.31 -170.38 -0.56 -8.77 16 6 C 0.53 7.24 7.85 -10.99 -0.09 7.16 16 7 O -0.54 -9.41 16.31 5.55 0.09 -9.32 16 8 C -0.13 -1.17 4.71 -27.88 -0.13 -1.30 16 9 C -0.60 -4.14 5.09 37.16 0.19 -3.95 16 10 S 2.42 15.27 5.36 -107.50 -0.58 14.70 16 11 C -0.65 -2.10 10.62 101.05 1.07 -1.02 16 12 O -0.94 -9.25 18.10 -57.83 -1.05 -10.30 16 13 O -0.94 -9.25 18.10 -57.83 -1.05 -10.30 16 14 C 0.12 1.92 5.83 -3.06 -0.02 1.90 16 15 C -0.10 -1.53 2.86 -88.78 -0.25 -1.78 16 16 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 17 C 0.16 3.11 4.53 -4.04 -0.02 3.09 16 18 N -0.73 -18.23 5.45 -59.91 -0.33 -18.56 16 19 C -0.24 -6.69 9.99 -15.06 -0.15 -6.84 16 20 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 21 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 22 N -0.93 -28.34 13.06 55.49 0.72 -27.61 16 23 Si 0.91 22.48 29.55 -169.99 -5.02 17.46 16 24 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 25 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 26 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 27 H 0.07 0.82 6.77 -51.93 -0.35 0.47 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.72 7.91 -51.93 -0.41 0.30 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.08 0.59 7.40 -51.93 -0.38 0.21 16 32 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.11 0.79 7.85 -51.93 -0.41 0.38 16 34 H 0.14 0.87 8.10 -51.92 -0.42 0.45 16 35 H 0.14 0.86 8.10 -51.92 -0.42 0.44 16 36 H 0.13 0.24 8.14 -51.92 -0.42 -0.19 16 37 H 0.13 0.33 8.14 -51.92 -0.42 -0.09 16 38 H 0.13 0.24 8.14 -51.92 -0.42 -0.19 16 39 H 0.08 1.44 7.77 -51.93 -0.40 1.04 16 40 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.03 0.50 6.69 -51.93 -0.35 0.15 16 43 H 0.38 10.08 7.52 -40.82 -0.31 9.78 16 44 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 371.08 15.07 5.59 5.59 Total: -1.00 -38.95 371.08 -8.92 -47.87 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -7.23 Total: 4.20 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: 0.48 Total: -4.97 kcal Atomic # 7 Polarization: -54.78 SS G_CDS: -0.17 Total: -54.94 kcal Atomic # 8 Polarization: -27.91 SS G_CDS: -2.00 Total: -29.91 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Atomic # 16 Polarization: 15.27 SS G_CDS: -0.58 Total: 14.70 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -38.95 -8.92 -47.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699966051.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.464 kcal (2) G-P(sol) polarization free energy of solvation -38.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds