Wall clock time and date at job start Tue Mar 31 2020 05:13:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 110.64612 * 2 1 4 4 C 1.54324 * 110.71940 * 123.14131 * 2 1 3 5 5 N 1.47022 * 107.27292 * 140.55495 * 4 2 1 6 6 C 1.34776 * 125.64861 * 181.02155 * 5 4 2 7 7 O 1.21282 * 119.99940 * 180.02562 * 6 5 4 8 8 C 1.50698 * 120.00035 * 0.03165 * 6 5 4 9 9 C 1.53006 * 109.47184 * 179.97438 * 8 6 5 10 10 S 1.81400 * 109.47145 * 179.97438 * 9 8 6 11 11 C 1.81398 * 101.92199 * 179.97438 * 10 9 8 12 12 O 1.42105 * 108.57573 * 294.48294 * 10 9 8 13 13 O 1.42097 * 108.57982 * 65.50874 * 10 9 8 14 14 C 1.47425 * 108.70346 * 1.28968 * 5 4 2 15 15 C 1.55130 * 104.72048 * 335.55014 * 14 5 4 16 16 H 1.08999 * 111.22874 * 279.17853 * 15 14 5 17 17 C 1.53001 * 110.90369 * 155.27251 * 15 14 5 18 18 N 1.46504 * 109.47123 * 72.98043 * 17 15 14 19 19 C 1.36930 * 120.00160 * 180.02562 * 18 17 15 20 20 H 1.08003 * 119.99993 * 359.97438 * 19 18 17 21 21 C 1.38814 * 120.00113 * 180.02562 * 19 18 17 22 22 N 1.31617 * 120.00124 * 179.97438 * 21 19 18 23 23 Si 1.86804 * 119.99768 * 359.97438 * 21 19 18 24 24 H 1.48497 * 109.46799 * 90.00433 * 23 21 19 25 25 H 1.48493 * 109.46857 * 210.00234 * 23 21 19 26 26 H 1.48496 * 109.47105 * 330.00225 * 23 21 19 27 27 H 1.08996 * 109.47271 * 298.31639 * 1 2 3 28 28 H 1.08999 * 109.46926 * 58.31042 * 1 2 3 29 29 H 1.08999 * 109.47698 * 178.30835 * 1 2 3 30 30 H 1.09008 * 109.88199 * 21.13922 * 4 2 1 31 31 H 1.09001 * 109.88532 * 259.97266 * 4 2 1 32 32 H 1.09001 * 109.47612 * 59.99945 * 8 6 5 33 33 H 1.09001 * 109.47122 * 299.99777 * 8 6 5 34 34 H 1.09001 * 109.47002 * 299.99404 * 9 8 6 35 35 H 1.08993 * 109.46955 * 59.99842 * 9 8 6 36 36 H 1.09007 * 109.46794 * 59.99821 * 11 10 9 37 37 H 1.09002 * 109.46983 * 179.97438 * 11 10 9 38 38 H 1.08997 * 109.47101 * 300.00294 * 11 10 9 39 39 H 1.08995 * 110.36838 * 94.48043 * 14 5 4 40 40 H 1.08998 * 110.36491 * 216.80652 * 14 5 4 41 41 H 1.09000 * 109.46987 * 192.97505 * 17 15 14 42 42 H 1.08993 * 109.47282 * 312.98038 * 17 15 14 43 43 H 0.97003 * 119.99466 * 359.97438 * 18 17 15 44 44 H 0.96999 * 119.99637 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0759 -0.7891 1.2086 5 7 3.2444 -1.5495 0.7417 6 6 3.9922 -2.3811 1.4939 7 8 4.9382 -2.9586 1.0015 8 6 3.6527 -2.5934 2.9467 9 6 4.6492 -3.5762 3.5650 10 16 4.2411 -3.8312 5.3140 11 6 5.5235 -5.0053 5.8307 12 8 4.4405 -2.6075 6.0084 13 8 2.9778 -4.4768 5.3946 14 6 3.4666 -1.2468 -0.6839 15 6 2.0790 -0.7976 -1.2124 16 1 1.4448 -1.6557 -1.4351 17 6 2.2279 0.1038 -2.4397 18 7 2.6329 -0.7041 -3.5927 19 6 2.8293 -0.1094 -4.8104 20 1 2.6851 0.9552 -4.9210 21 6 3.2125 -0.8750 -5.9031 22 7 3.4007 -0.3034 -7.0736 23 14 3.4612 -2.7165 -5.7120 24 1 2.1815 -3.4195 -5.9829 25 1 4.4933 -3.1790 -6.6743 26 1 3.9064 -3.0149 -4.3272 27 1 -0.3633 0.4874 0.9047 28 1 -0.3633 0.5398 -0.8744 29 1 -0.3634 -1.0272 -0.0303 30 1 1.3128 -1.4732 1.5801 31 1 2.3740 -0.0990 1.9979 32 1 2.6444 -2.9992 3.0288 33 1 3.7053 -1.6414 3.4750 34 1 4.5961 -4.5281 3.0366 35 1 5.6576 -3.1708 3.4830 36 1 6.5066 -4.5585 5.6816 37 1 5.3909 -5.2474 6.8852 38 1 5.4441 -5.9152 5.2359 39 1 4.1947 -0.4429 -0.7920 40 1 3.8031 -2.1383 -1.2131 41 1 1.2749 0.5883 -2.6524 42 1 2.9855 0.8625 -2.2435 43 1 2.7628 -1.6603 -3.4933 44 1 3.6689 -0.8384 -7.8370 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699966061.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:31 Heat of formation + Delta-G solvation = -94.434508 kcal Electronic energy + Delta-G solvation = -24815.314885 eV Core-core repulsion = 21088.485123 eV Total energy + Delta-G solvation = -3726.829762 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.33638 -38.20277 -37.42234 -36.48152 -34.90727 -33.59881 -32.95381 -31.56539 -30.15679 -29.64206 -26.82364 -26.26867 -24.52512 -22.70386 -21.14649 -20.22646 -19.43999 -19.33065 -17.89085 -17.49834 -16.85777 -16.61229 -16.32265 -16.09320 -15.71990 -14.88445 -14.62446 -14.16017 -14.09826 -13.88146 -13.76730 -13.69660 -13.31046 -13.12055 -12.91305 -12.74113 -12.52825 -12.45644 -12.42727 -12.40556 -12.15475 -11.91161 -11.55069 -11.53476 -11.46210 -11.10035 -10.97015 -10.71094 -10.58019 -10.38183 -10.14937 -10.00068 -9.60373 -8.92094 -8.75060 -7.26123 -5.78425 -3.14449 -0.51639 2.23826 2.43588 2.74922 3.19414 3.37615 3.41067 3.45604 3.54495 3.97959 4.21991 4.23386 4.30487 4.39378 4.49851 4.58257 4.62214 4.75320 4.90696 5.04095 5.14047 5.15031 5.30741 5.32177 5.35888 5.37136 5.52243 5.60169 5.63750 5.72736 5.86901 5.97178 6.04790 6.08524 6.15493 6.27866 6.57650 6.67413 7.37445 7.96556 7.97408 8.40341 9.18839 9.91354 10.10327 11.39857 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019864 B = 0.002714 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.272120 B =10312.723636 C =11270.611410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.097 4.097 3 H 0.090 0.910 4 C 0.099 3.901 5 N -0.617 5.617 6 C 0.533 3.467 7 O -0.537 6.537 8 C -0.129 4.129 9 C -0.596 4.596 10 S 2.422 3.578 11 C -0.654 4.654 12 O -0.939 6.939 13 O -0.939 6.939 14 C 0.112 3.888 15 C -0.106 4.106 16 H 0.086 0.914 17 C 0.170 3.830 18 N -0.756 5.756 19 C -0.245 4.245 20 H 0.091 0.909 21 C 0.005 3.995 22 N -0.933 5.933 23 Si 0.883 3.117 24 H -0.284 1.284 25 H -0.290 1.290 26 H -0.277 1.277 27 H 0.056 0.944 28 H 0.067 0.933 29 H 0.057 0.943 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.109 0.891 33 H 0.110 0.890 34 H 0.141 0.859 35 H 0.141 0.859 36 H 0.130 0.870 37 H 0.130 0.870 38 H 0.130 0.870 39 H 0.075 0.925 40 H 0.079 0.921 41 H 0.034 0.966 42 H 0.030 0.970 43 H 0.361 0.639 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.589 -6.068 28.167 28.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.116 4.116 3 H 0.109 0.891 4 C -0.024 4.024 5 N -0.351 5.351 6 C 0.320 3.680 7 O -0.415 6.415 8 C -0.170 4.170 9 C -0.725 4.725 10 S 2.604 3.396 11 C -0.804 4.804 12 O -0.936 6.936 13 O -0.936 6.936 14 C -0.009 4.009 15 C -0.126 4.126 16 H 0.104 0.896 17 C 0.042 3.958 18 N -0.402 5.402 19 C -0.375 4.375 20 H 0.108 0.892 21 C -0.190 4.190 22 N -0.581 5.581 23 Si 0.713 3.287 24 H -0.211 1.211 25 H -0.217 1.217 26 H -0.203 1.203 27 H 0.075 0.925 28 H 0.086 0.914 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.128 0.872 33 H 0.128 0.872 34 H 0.159 0.841 35 H 0.159 0.841 36 H 0.149 0.851 37 H 0.148 0.852 38 H 0.149 0.851 39 H 0.093 0.907 40 H 0.098 0.902 41 H 0.052 0.948 42 H 0.048 0.952 43 H 0.193 0.807 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.691 -5.890 28.286 28.901 hybrid contribution 0.958 -1.720 -0.520 2.037 sum 0.268 -7.610 27.765 28.791 Atomic orbital electron populations 1.21756 0.93512 1.02292 1.02316 1.22210 0.96575 0.99631 0.93202 0.89143 1.22263 0.87616 0.94855 0.97693 1.48548 1.30100 1.44284 1.12175 1.19839 0.82188 0.78493 0.87489 1.90727 1.28738 1.48271 1.73720 1.21325 1.00130 1.00749 0.94802 1.30165 1.09726 1.09361 1.23247 1.07794 0.77102 0.76680 0.78018 1.30238 1.19311 1.17940 1.12900 1.93612 1.86565 1.42692 1.70722 1.93612 1.37540 1.76707 1.85722 1.22447 0.97747 1.01620 0.79131 1.22781 0.95238 0.99415 0.95124 0.89551 1.20563 0.98007 0.92537 0.84663 1.42724 1.84281 1.06260 1.06943 1.19034 1.39129 0.94708 0.84633 0.89166 1.24670 1.01476 0.97448 0.95450 1.69699 1.53557 1.34817 1.00046 0.86567 0.77791 0.87113 0.77192 1.21069 1.21667 1.20288 0.92457 0.91433 0.92426 0.91007 0.91119 0.87234 0.87215 0.84119 0.84118 0.85149 0.85153 0.85145 0.90651 0.90207 0.94806 0.95229 0.80654 0.93030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.13 37.15 0.34 -0.91 16 2 C -0.10 -0.99 3.01 -88.79 -0.27 -1.26 16 3 H 0.09 0.89 8.04 -51.93 -0.42 0.48 16 4 C 0.10 0.91 6.08 -3.06 -0.02 0.90 16 5 N -0.62 -7.72 3.32 -170.38 -0.57 -8.29 16 6 C 0.53 6.83 7.85 -10.99 -0.09 6.74 16 7 O -0.54 -8.89 16.24 5.56 0.09 -8.80 16 8 C -0.13 -1.08 4.90 -27.88 -0.14 -1.22 16 9 C -0.60 -3.80 5.09 37.16 0.19 -3.61 16 10 S 2.42 14.18 5.36 -107.50 -0.58 13.61 16 11 C -0.65 -1.83 10.62 101.05 1.07 -0.76 16 12 O -0.94 -8.82 18.10 -57.83 -1.05 -9.87 16 13 O -0.94 -8.91 18.10 -57.83 -1.05 -9.95 16 14 C 0.11 1.68 6.33 -2.41 -0.02 1.67 16 15 C -0.11 -1.49 2.51 -88.35 -0.22 -1.71 16 16 H 0.09 1.25 8.04 -51.93 -0.42 0.83 16 17 C 0.17 3.05 5.72 -4.04 -0.02 3.03 16 18 N -0.76 -17.58 5.35 -59.91 -0.32 -17.90 16 19 C -0.25 -6.89 10.47 -15.06 -0.16 -7.04 16 20 H 0.09 2.70 8.06 -52.48 -0.42 2.28 16 21 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 22 N -0.93 -29.36 13.97 55.49 0.78 -28.58 16 23 Si 0.88 22.32 27.74 -169.99 -4.71 17.60 16 24 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 25 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 26 H -0.28 -6.66 6.52 56.52 0.37 -6.29 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 30 H 0.07 0.56 7.82 -51.92 -0.41 0.15 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.14 0.79 8.10 -51.92 -0.42 0.37 16 35 H 0.14 0.77 8.10 -51.93 -0.42 0.35 16 36 H 0.13 0.18 8.14 -51.92 -0.42 -0.24 16 37 H 0.13 0.29 8.14 -51.92 -0.42 -0.13 16 38 H 0.13 0.19 8.14 -51.93 -0.42 -0.23 16 39 H 0.08 1.17 7.91 -51.93 -0.41 0.76 16 40 H 0.08 1.38 8.03 -51.93 -0.42 0.97 16 41 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.03 0.54 7.96 -51.93 -0.41 0.13 16 43 H 0.36 8.30 5.53 -40.82 -0.23 8.07 16 44 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 LS Contribution 373.43 15.07 5.63 5.63 Total: -1.00 -39.70 373.43 -8.57 -48.27 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -7.37 Total: 2.39 kcal Atomic # 6 Polarization: -4.70 SS G_CDS: 0.58 Total: -4.12 kcal Atomic # 7 Polarization: -54.65 SS G_CDS: -0.11 Total: -54.77 kcal Atomic # 8 Polarization: -26.61 SS G_CDS: -2.00 Total: -28.62 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.71 Total: 17.60 kcal Atomic # 16 Polarization: 14.18 SS G_CDS: -0.58 Total: 13.61 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -39.70 -8.57 -48.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699966061.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.165 kcal (2) G-P(sol) polarization free energy of solvation -39.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds