Wall clock time and date at job start Tue Mar 31 2020 04:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47228 * 2 1 4 4 C 1.53007 * 109.47030 * 179.97438 * 3 2 1 5 5 S 1.81399 * 109.47103 * 180.02562 * 4 3 2 6 6 O 1.42099 * 108.57685 * 65.51262 * 5 4 3 7 7 O 1.42098 * 108.57531 * 294.49136 * 5 4 3 8 8 C 1.81391 * 101.92070 * 180.02562 * 5 4 3 9 9 C 1.50698 * 109.47350 * 179.97438 * 8 5 4 10 10 O 1.21284 * 119.99939 * 0.02562 * 9 8 5 11 11 N 1.34775 * 120.00488 * 179.97438 * 9 8 5 12 12 C 1.46501 * 120.00273 * 180.02562 * 11 9 8 13 13 H 1.09000 * 112.84823 * 23.80872 * 12 11 9 14 14 C 1.53786 * 113.61226 * 155.00310 * 12 11 9 15 15 C 1.53780 * 87.08142 * 89.20225 * 14 12 11 16 16 H 1.09000 * 113.61473 * 270.80054 * 15 14 12 17 17 N 1.46494 * 113.61812 * 139.98028 * 15 14 12 18 18 C 1.36931 * 120.00458 * 156.52816 * 17 15 14 19 19 H 1.08002 * 120.00103 * 0.02562 * 18 17 15 20 20 C 1.38812 * 120.00429 * 179.97438 * 18 17 15 21 21 N 1.31624 * 119.99535 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00484 * 179.97438 * 20 18 17 23 23 H 1.48490 * 109.47339 * 180.02562 * 22 20 18 24 24 H 1.48493 * 109.47239 * 300.00542 * 22 20 18 25 25 H 1.48504 * 109.46636 * 60.00101 * 22 20 18 26 26 C 1.53786 * 87.17252 * 25.38681 * 15 14 12 27 27 H 1.09002 * 109.47276 * 299.99645 * 1 2 3 28 28 H 1.09006 * 109.47201 * 59.99409 * 1 2 3 29 29 H 1.08999 * 109.47432 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46668 * 239.99902 * 2 1 3 31 31 H 1.08998 * 109.46613 * 120.00397 * 2 1 3 32 32 H 1.09009 * 109.47067 * 60.00115 * 3 2 1 33 33 H 1.08996 * 109.47505 * 300.00289 * 3 2 1 34 34 H 1.09002 * 109.46542 * 60.00101 * 4 3 2 35 35 H 1.08998 * 109.46938 * 300.00474 * 4 3 2 36 36 H 1.08999 * 109.47486 * 59.99857 * 8 5 4 37 37 H 1.09002 * 109.47098 * 300.00217 * 8 5 4 38 38 H 0.97007 * 119.99552 * 0.02562 * 11 9 8 39 39 H 1.09004 * 113.61375 * 334.65219 * 14 12 11 40 40 H 1.08997 * 113.61069 * 203.74906 * 14 12 11 41 41 H 0.97000 * 119.99459 * 336.52615 * 17 15 14 42 42 H 0.97005 * 119.99717 * 179.97438 * 21 20 18 43 43 H 1.08999 * 113.61401 * 89.16326 * 26 15 14 44 44 H 1.09005 * 113.61249 * 220.05976 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 16 4.1748 3.1526 0.0014 6 8 3.7988 3.7652 1.2272 7 8 3.7998 3.7659 -1.2243 8 6 5.9730 2.9142 0.0013 9 6 6.6578 4.2566 0.0013 10 8 5.9976 5.2741 0.0018 11 7 8.0037 4.3267 0.0017 12 6 8.6693 5.6317 0.0022 13 1 8.0428 6.4262 0.4077 14 6 10.0867 5.6001 0.5981 15 6 10.5910 5.2862 -0.8203 16 1 10.6231 4.2204 -1.0465 17 7 11.8341 5.9790 -1.1679 18 6 12.6507 5.4723 -2.1433 19 1 12.3783 4.5620 -2.6567 20 6 13.8284 6.1291 -2.4730 21 7 14.1602 7.2388 -1.8477 22 14 14.9428 5.4375 -3.8031 23 1 16.1276 6.3181 -3.9635 24 1 15.3882 4.0747 -3.4164 25 1 14.1985 5.3694 -5.0864 26 6 9.3270 5.9891 -1.3430 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6767 1.9563 0.8901 33 1 1.6767 1.9563 -0.8899 34 1 3.9337 0.9284 -0.8892 35 1 3.9330 0.9286 0.8908 36 1 6.2657 2.3575 -0.8889 37 1 6.2656 2.3566 0.8910 38 1 8.5317 3.5129 0.0017 39 1 10.2441 4.7874 1.3073 40 1 10.4225 6.5652 0.9773 41 1 12.0786 6.7968 -0.7071 42 1 14.9833 7.6976 -2.0779 43 1 9.4548 7.0607 -1.4956 44 1 8.8722 5.4900 -2.1987 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752686987.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:25:32 Heat of formation + Delta-G solvation = -85.426741 kcal Electronic energy + Delta-G solvation = -24125.791613 eV Core-core repulsion = 20399.352457 eV Total energy + Delta-G solvation = -3726.439156 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.18861 -38.14831 -37.19784 -36.42576 -36.06082 -34.19359 -32.87109 -31.13654 -30.68117 -29.62452 -25.20227 -24.97593 -24.53366 -22.46026 -21.82546 -21.17494 -19.20500 -18.96714 -17.82244 -17.20969 -16.86249 -16.79501 -16.28717 -16.00636 -15.50874 -15.18130 -14.95434 -14.43693 -14.23030 -13.93652 -13.88789 -13.56663 -13.32454 -13.15284 -12.74321 -12.25137 -12.21406 -12.20588 -12.14344 -12.08099 -11.91349 -11.80608 -11.74083 -11.34476 -11.18470 -10.93711 -10.84698 -10.72806 -10.40851 -10.36980 -10.22210 -9.96417 -9.62862 -9.02184 -8.90117 -7.03117 -5.83687 -3.13203 -0.46125 2.27871 2.41445 2.77927 3.39241 3.43963 3.45172 3.48294 3.65298 4.03727 4.13961 4.25435 4.43762 4.47105 4.53852 4.68953 4.74011 4.86404 4.94138 4.97503 5.12513 5.14410 5.25193 5.35821 5.37981 5.43904 5.55424 5.64202 5.77480 5.80047 5.82734 6.03812 6.18245 6.25516 6.35728 6.55085 6.61492 6.98511 7.28441 7.62376 7.93399 8.34406 9.45677 10.02474 10.36883 11.38380 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.030063 B = 0.002095 C = 0.002016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.150800 B =13359.456750 C =13887.807681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.117 4.117 3 C -0.115 4.115 4 C -0.620 4.620 5 S 2.451 3.549 6 O -0.920 6.920 7 O -0.918 6.918 8 C -0.662 4.662 9 C 0.541 3.459 10 O -0.531 6.531 11 N -0.693 5.693 12 C 0.110 3.890 13 H 0.101 0.899 14 C -0.157 4.157 15 C 0.166 3.834 16 H 0.073 0.927 17 N -0.712 5.712 18 C -0.248 4.248 19 H 0.070 0.930 20 C -0.011 4.011 21 N -0.931 5.931 22 Si 0.909 3.091 23 H -0.290 1.290 24 H -0.286 1.286 25 H -0.285 1.285 26 C -0.176 4.176 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.134 0.866 35 H 0.134 0.866 36 H 0.160 0.840 37 H 0.159 0.841 38 H 0.404 0.596 39 H 0.065 0.935 40 H 0.094 0.906 41 H 0.386 0.614 42 H 0.257 0.743 43 H 0.089 0.911 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.091 -17.081 6.527 29.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.155 4.155 3 C -0.153 4.153 4 C -0.748 4.748 5 S 2.628 3.372 6 O -0.917 6.917 7 O -0.915 6.915 8 C -0.790 4.790 9 C 0.324 3.676 10 O -0.408 6.408 11 N -0.343 5.343 12 C 0.005 3.995 13 H 0.119 0.881 14 C -0.197 4.197 15 C 0.054 3.946 16 H 0.091 0.909 17 N -0.350 5.350 18 C -0.379 4.379 19 H 0.088 0.912 20 C -0.208 4.208 21 N -0.578 5.578 22 Si 0.739 3.261 23 H -0.216 1.216 24 H -0.213 1.213 25 H -0.212 1.212 26 C -0.218 4.218 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.100 0.900 33 H 0.101 0.899 34 H 0.152 0.848 35 H 0.152 0.848 36 H 0.178 0.822 37 H 0.177 0.823 38 H 0.239 0.761 39 H 0.084 0.916 40 H 0.113 0.887 41 H 0.221 0.779 42 H 0.067 0.933 43 H 0.107 0.893 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -23.826 -15.627 6.387 29.200 hybrid contribution 1.698 -1.418 -0.646 2.305 sum -22.128 -17.046 5.741 28.516 Atomic orbital electron populations 1.21818 0.95331 1.02027 1.02340 1.21488 0.96256 0.95197 1.02577 1.21394 0.89821 0.99807 1.04283 1.30482 1.07347 1.25280 1.11736 1.07472 0.76432 0.77376 0.75885 1.93585 1.79778 1.72474 1.45826 1.93595 1.79747 1.72385 1.45739 1.30895 1.28762 1.05858 1.13443 1.19052 0.83456 0.88238 0.76817 1.90866 1.64203 1.35883 1.49870 1.45563 1.05324 1.09987 1.73391 1.22012 0.93385 0.84442 0.99680 0.88123 1.23848 0.93571 1.02875 0.99403 1.21629 0.86132 0.95573 0.91309 0.90950 1.42382 1.20183 1.28658 1.43749 1.19227 1.00368 1.06440 1.11865 0.91190 1.24779 0.98436 0.97500 1.00051 1.69651 1.25469 1.18469 1.44243 0.86253 0.80217 0.77945 0.81654 1.21626 1.21257 1.21202 1.24364 0.99408 1.02628 0.95423 0.92375 0.92357 0.92391 0.91500 0.91530 0.89972 0.89930 0.84750 0.84810 0.82189 0.82284 0.76098 0.91639 0.88740 0.77947 0.93327 0.89259 0.92247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.72 9.91 37.16 0.37 -0.35 16 2 C -0.12 -0.53 5.93 -26.73 -0.16 -0.69 16 3 C -0.11 -0.67 5.22 -26.73 -0.14 -0.81 16 4 C -0.62 -2.74 5.81 37.16 0.22 -2.53 16 5 S 2.45 22.98 3.96 -107.50 -0.43 22.55 16 6 O -0.92 -12.22 17.95 -59.51 -1.07 -13.29 16 7 O -0.92 -12.53 17.94 -59.54 -1.07 -13.60 16 8 C -0.66 -4.71 6.29 36.00 0.23 -4.49 16 9 C 0.54 7.07 7.85 -10.99 -0.09 6.98 16 10 O -0.53 -9.40 15.22 2.56 0.04 -9.36 16 11 N -0.69 -8.43 5.26 -52.93 -0.28 -8.71 16 12 C 0.11 1.63 4.33 -67.03 -0.29 1.34 16 13 H 0.10 1.59 7.46 -51.93 -0.39 1.20 16 14 C -0.16 -2.39 7.58 -25.92 -0.20 -2.59 16 15 C 0.17 3.08 4.35 -67.12 -0.29 2.79 16 16 H 0.07 1.28 8.11 -51.93 -0.42 0.86 16 17 N -0.71 -17.25 5.41 -52.64 -0.28 -17.54 16 18 C -0.25 -6.71 9.97 -15.06 -0.15 -6.86 16 19 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 20 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 21 N -0.93 -27.64 13.06 55.49 0.72 -26.91 16 22 Si 0.91 21.95 29.55 -169.99 -5.02 16.93 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 24 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 26 C -0.18 -3.06 7.69 -25.83 -0.20 -3.26 16 27 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 32 H 0.08 0.48 8.14 -51.92 -0.42 0.06 16 33 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.13 0.27 8.14 -51.92 -0.42 -0.15 16 35 H 0.13 0.24 8.14 -51.92 -0.42 -0.18 16 36 H 0.16 0.57 8.14 -51.92 -0.42 0.14 16 37 H 0.16 0.48 8.14 -51.92 -0.42 0.06 16 38 H 0.40 3.67 8.70 -40.82 -0.36 3.31 16 39 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.09 1.48 8.11 -51.93 -0.42 1.06 16 41 H 0.39 9.97 7.91 -40.82 -0.32 9.65 16 42 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 43 H 0.09 1.66 8.14 -51.93 -0.42 1.24 16 44 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 380.53 15.07 5.73 5.73 Total: -1.00 -38.67 380.53 -9.82 -48.49 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -7.37 Total: 6.58 kcal Atomic # 6 Polarization: -10.06 SS G_CDS: -0.80 Total: -10.86 kcal Atomic # 7 Polarization: -53.32 SS G_CDS: 0.16 Total: -53.16 kcal Atomic # 8 Polarization: -34.15 SS G_CDS: -2.10 Total: -36.25 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Atomic # 16 Polarization: 22.98 SS G_CDS: -0.43 Total: 22.55 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -38.67 -9.82 -48.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752686987.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.939 kcal (2) G-P(sol) polarization free energy of solvation -38.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds