Wall clock time and date at job start Tue Mar 31 2020 04:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47076 * 2 1 4 4 N 1.46500 * 109.47030 * 300.00020 * 3 2 1 5 5 C 1.36937 * 120.00138 * 180.02562 * 4 3 2 6 6 H 1.08001 * 119.99755 * 359.97438 * 5 4 3 7 7 C 1.38808 * 120.00284 * 180.02562 * 5 4 3 8 8 N 1.31621 * 120.00119 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 120.00156 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.47001 * 90.00192 * 9 7 5 11 11 H 1.48499 * 109.47592 * 210.00703 * 9 7 5 12 12 H 1.48501 * 109.46810 * 330.00394 * 9 7 5 13 13 N 1.46494 * 109.47145 * 240.00201 * 2 1 3 14 14 C 1.34772 * 120.00318 * 183.95049 * 13 2 1 15 15 O 1.21290 * 119.99870 * 5.18818 * 14 13 2 16 16 C 1.50698 * 120.00296 * 185.19000 * 14 13 2 17 17 C 1.53005 * 109.47045 * 179.97438 * 16 14 13 18 18 S 1.81400 * 109.46848 * 179.97438 * 17 16 14 19 19 C 1.81399 * 101.91889 * 180.02562 * 18 17 16 20 20 O 1.42094 * 108.58037 * 294.48615 * 18 17 16 21 21 O 1.42105 * 108.57606 * 65.51708 * 18 17 16 22 22 C 1.52994 * 109.46866 * 119.99658 * 2 1 3 23 23 C 1.52995 * 117.52274 * 348.45055 * 22 2 1 24 24 C 1.53001 * 117.49975 * 57.08548 * 22 2 1 25 25 H 1.09003 * 109.46706 * 300.00391 * 1 2 3 26 26 H 1.09000 * 109.47099 * 59.99667 * 1 2 3 27 27 H 1.08993 * 109.46980 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47388 * 59.99734 * 3 2 1 29 29 H 1.08993 * 109.47268 * 179.97438 * 3 2 1 30 30 H 0.96996 * 120.00435 * 359.97438 * 4 3 2 31 31 H 0.97003 * 120.00431 * 180.02562 * 8 7 5 32 32 H 0.97001 * 119.99703 * 3.94030 * 13 2 1 33 33 H 1.09002 * 109.46756 * 299.99546 * 16 14 13 34 34 H 1.08998 * 109.47335 * 59.99839 * 16 14 13 35 35 H 1.08997 * 109.47243 * 300.00282 * 17 16 14 36 36 H 1.09006 * 109.46919 * 60.00182 * 17 16 14 37 37 H 1.08999 * 109.47511 * 60.00230 * 19 18 17 38 38 H 1.09003 * 109.47421 * 180.02562 * 19 18 17 39 39 H 1.09003 * 109.47021 * 300.00212 * 19 18 17 40 40 H 1.09009 * 115.55026 * 202.74551 * 22 2 1 41 41 H 1.09002 * 117.50479 * 214.96757 * 23 22 2 42 42 H 1.08997 * 117.49803 * 359.97438 * 23 22 2 43 43 H 1.08998 * 117.49554 * 359.96562 * 24 22 2 44 44 H 1.08998 * 117.50237 * 144.97406 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.5517 2.1331 -1.1962 5 6 1.8829 3.4440 -1.4132 6 1 2.5038 3.9688 -0.7023 7 6 1.4198 4.0985 -2.5463 8 7 1.7385 5.3583 -2.7551 9 14 0.3452 3.1909 -3.7755 10 1 -1.0823 3.3546 -3.4007 11 1 0.5675 3.7485 -5.1338 12 1 0.6963 1.7480 -3.7693 13 7 2.0184 -0.6905 -1.1961 14 6 3.3408 -0.8838 -1.3701 15 8 4.1197 -0.5711 -0.4945 16 6 3.8517 -1.4883 -2.6524 17 6 5.3768 -1.5971 -2.5929 18 16 5.9917 -2.3255 -4.1362 19 6 7.7823 -2.3584 -3.8475 20 8 5.5230 -3.6640 -4.2233 21 8 5.7209 -1.4246 -5.2013 22 6 2.0400 -0.7212 1.2493 23 6 1.0223 -1.0406 2.3461 24 6 1.5801 -2.1637 1.4694 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.6767 1.9564 0.8900 29 1 3.1300 1.4425 0.0005 30 1 0.9943 1.6616 -1.8349 31 1 1.4146 5.8158 -3.5467 32 1 1.3899 -1.0088 -1.8629 33 1 3.4212 -2.4812 -2.7829 34 1 3.5655 -0.8550 -3.4921 35 1 5.8070 -0.6041 -2.4625 36 1 5.6633 -2.2303 -1.7531 37 1 7.9978 -2.9691 -2.9708 38 1 8.2830 -2.7824 -4.7180 39 1 8.1421 -1.3432 -3.6805 40 1 3.0518 -0.4623 1.5615 41 1 1.3644 -0.9920 3.3799 42 1 -0.0109 -0.7367 2.1780 43 1 0.9139 -2.5988 0.7245 44 1 2.2894 -2.8540 1.9261 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753523028.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:35:10 Heat of formation + Delta-G solvation = -60.774010 kcal Electronic energy + Delta-G solvation = -25874.438651 eV Core-core repulsion = 22149.068518 eV Total energy + Delta-G solvation = -3725.370133 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.26758 -37.90454 -37.17157 -36.22905 -35.18373 -33.57594 -33.19099 -31.38751 -29.95736 -29.68659 -26.57667 -25.27011 -23.60541 -22.34791 -21.25246 -20.57473 -19.11964 -18.90840 -17.75377 -17.60981 -16.52592 -16.35082 -16.21322 -15.91255 -15.37494 -15.19225 -14.62671 -14.08829 -13.96134 -13.81504 -13.50105 -13.46713 -13.16773 -12.86612 -12.74595 -12.41640 -12.28921 -12.24697 -12.17757 -12.04559 -11.59613 -11.56899 -11.30326 -11.22251 -11.08055 -10.92631 -10.83545 -10.75535 -10.36353 -10.19382 -10.00712 -9.58459 -9.43944 -8.86851 -8.75655 -7.19493 -5.75018 -3.09709 -0.26379 2.49075 2.83685 3.13860 3.33341 3.35735 3.44307 3.47419 3.79195 4.02267 4.29182 4.49650 4.51082 4.58702 4.59737 4.76375 4.86642 4.97814 5.07947 5.20680 5.26030 5.30645 5.35212 5.43045 5.50670 5.56008 5.63029 5.63718 5.66290 5.86726 6.02634 6.04902 6.15347 6.32856 6.41155 6.43296 6.75482 6.92572 7.70738 8.01950 8.42873 8.44698 9.22947 9.94860 10.15185 11.43758 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.009557 B = 0.005000 C = 0.003644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2928.940358 B = 5599.205963 C = 7681.847863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.196 3.804 3 C 0.152 3.848 4 N -0.751 5.751 5 C -0.239 4.239 6 H 0.089 0.911 7 C 0.004 3.996 8 N -0.935 5.935 9 Si 0.882 3.118 10 H -0.285 1.285 11 H -0.290 1.290 12 H -0.279 1.279 13 N -0.715 5.715 14 C 0.532 3.468 15 O -0.529 6.529 16 C -0.137 4.137 17 C -0.591 4.591 18 S 2.419 3.581 19 C -0.655 4.655 20 O -0.943 6.943 21 O -0.935 6.935 22 C -0.141 4.141 23 C -0.182 4.182 24 C -0.175 4.175 25 H 0.079 0.921 26 H 0.067 0.933 27 H 0.056 0.944 28 H 0.035 0.965 29 H 0.045 0.955 30 H 0.358 0.642 31 H 0.259 0.741 32 H 0.397 0.603 33 H 0.105 0.895 34 H 0.111 0.889 35 H 0.143 0.857 36 H 0.138 0.862 37 H 0.128 0.872 38 H 0.128 0.872 39 H 0.131 0.869 40 H 0.117 0.883 41 H 0.091 0.909 42 H 0.100 0.900 43 H 0.089 0.911 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.300 -20.185 3.378 21.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.110 3.890 3 C 0.024 3.976 4 N -0.397 5.397 5 C -0.369 4.369 6 H 0.107 0.893 7 C -0.192 4.192 8 N -0.583 5.583 9 Si 0.713 3.287 10 H -0.212 1.212 11 H -0.217 1.217 12 H -0.206 1.206 13 N -0.366 5.366 14 C 0.317 3.683 15 O -0.405 6.405 16 C -0.178 4.178 17 C -0.720 4.720 18 S 2.602 3.398 19 C -0.804 4.804 20 O -0.940 6.940 21 O -0.933 6.933 22 C -0.161 4.161 23 C -0.220 4.220 24 C -0.212 4.212 25 H 0.098 0.902 26 H 0.086 0.914 27 H 0.075 0.925 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.191 0.809 31 H 0.069 0.931 32 H 0.230 0.770 33 H 0.123 0.877 34 H 0.129 0.871 35 H 0.161 0.839 36 H 0.156 0.844 37 H 0.147 0.853 38 H 0.147 0.853 39 H 0.149 0.851 40 H 0.135 0.865 41 H 0.109 0.891 42 H 0.118 0.882 43 H 0.108 0.892 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 5.512 -19.986 3.285 20.991 hybrid contribution -0.510 -0.330 -0.620 0.868 sum 5.002 -20.317 2.665 21.093 Atomic orbital electron populations 1.22153 0.93630 1.01591 1.03997 1.20111 0.93473 0.92490 0.82905 1.20970 0.98253 0.87824 0.90548 1.42628 1.62188 1.11131 1.23764 1.19052 1.26317 0.85651 1.05850 0.89314 1.24648 1.00640 0.95816 0.98088 1.69695 1.49827 1.09739 1.29035 0.86586 0.81041 0.79124 0.81938 1.21154 1.21676 1.20563 1.45992 1.07030 1.59653 1.23911 1.19939 0.82429 0.78091 0.87887 1.90645 1.55697 1.50687 1.43497 1.21363 0.92666 1.04152 0.99571 1.30094 1.04833 1.15271 1.21792 1.07856 0.78544 0.75740 0.77705 1.30245 1.26246 1.11862 1.12097 1.93589 1.78883 1.35417 1.86156 1.93635 1.83226 1.65903 1.50499 1.22563 0.99974 0.97226 0.96316 1.23146 0.99454 1.03380 0.95978 1.22804 1.03697 0.91618 1.03098 0.90210 0.91411 0.92480 0.94736 0.93702 0.80876 0.93103 0.76958 0.87658 0.87060 0.83867 0.84359 0.85318 0.85334 0.85060 0.86482 0.89079 0.88192 0.89245 0.89405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.04 7.04 37.16 0.26 -1.78 16 2 C 0.20 2.93 0.54 -131.82 -0.07 2.85 16 3 C 0.15 3.01 5.02 -4.04 -0.02 2.99 16 4 N -0.75 -17.55 4.98 -59.91 -0.30 -17.85 16 5 C -0.24 -6.80 10.47 -15.06 -0.16 -6.95 16 6 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 7 C 0.00 0.10 5.50 -17.43 -0.10 0.01 16 8 N -0.93 -29.57 13.97 55.49 0.78 -28.80 16 9 Si 0.88 21.96 27.74 -169.99 -4.71 17.24 16 10 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 11 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 12 H -0.28 -6.37 6.52 56.52 0.37 -6.00 16 13 N -0.71 -9.94 4.71 -47.61 -0.22 -10.17 16 14 C 0.53 7.80 7.24 -10.99 -0.08 7.72 16 15 O -0.53 -9.10 12.80 5.55 0.07 -9.03 16 16 C -0.14 -1.56 5.71 -27.88 -0.16 -1.71 16 17 C -0.59 -5.46 5.09 37.16 0.19 -5.27 16 18 S 2.42 21.22 5.36 -107.50 -0.58 20.65 16 19 C -0.65 -3.46 10.62 101.05 1.07 -2.39 16 20 O -0.94 -11.01 18.10 -57.83 -1.05 -12.06 16 21 O -0.94 -12.40 18.10 -57.83 -1.05 -13.44 16 22 C -0.14 -1.91 4.05 -90.62 -0.37 -2.28 16 23 C -0.18 -2.02 9.61 -26.73 -0.26 -2.28 16 24 C -0.17 -1.94 9.81 -26.73 -0.26 -2.21 16 25 H 0.08 1.02 6.84 -51.93 -0.36 0.66 16 26 H 0.07 0.98 6.86 -51.93 -0.36 0.62 16 27 H 0.06 0.60 7.01 -51.93 -0.36 0.24 16 28 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.05 1.00 6.65 -51.93 -0.35 0.65 16 30 H 0.36 7.97 4.21 -40.82 -0.17 7.80 16 31 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 32 H 0.40 4.55 8.48 -40.82 -0.35 4.21 16 33 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.11 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.14 1.34 8.10 -51.93 -0.42 0.92 16 36 H 0.14 1.02 8.10 -51.92 -0.42 0.60 16 37 H 0.13 0.44 8.14 -51.92 -0.42 0.02 16 38 H 0.13 0.59 8.14 -51.92 -0.42 0.17 16 39 H 0.13 0.56 8.14 -51.92 -0.42 0.13 16 40 H 0.12 1.83 7.18 -51.92 -0.37 1.46 16 41 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.10 1.04 5.87 -51.93 -0.31 0.74 16 43 H 0.09 0.93 7.42 -51.93 -0.39 0.54 16 44 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 365.41 15.07 5.51 5.51 Total: -1.00 -39.32 365.41 -8.31 -47.63 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: -6.82 Total: 11.60 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: 0.05 Total: -11.29 kcal Atomic # 7 Polarization: -57.06 SS G_CDS: 0.25 Total: -56.81 kcal Atomic # 8 Polarization: -32.51 SS G_CDS: -2.02 Total: -34.53 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.71 Total: 17.24 kcal Atomic # 16 Polarization: 21.22 SS G_CDS: -0.58 Total: 20.65 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -39.32 -8.31 -47.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753523028.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.141 kcal (2) G-P(sol) polarization free energy of solvation -39.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds