Wall clock time and date at job start Tue Mar 31 2020 05:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09007 * 109.46936 * 2 1 4 4 N 1.46492 * 109.47280 * 119.99895 * 2 1 3 5 5 C 1.36940 * 120.00292 * 275.00003 * 4 2 1 6 6 H 1.08002 * 119.99711 * 0.02562 * 5 4 2 7 7 C 1.38809 * 120.00112 * 180.02562 * 5 4 2 8 8 N 1.31620 * 120.00312 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00060 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47261 * 60.00137 * 9 7 5 11 11 H 1.48496 * 109.47244 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47128 * 300.00110 * 9 7 5 13 13 C 1.52997 * 109.47254 * 240.00304 * 2 1 3 14 14 H 1.08990 * 109.52745 * 185.07690 * 13 2 1 15 15 C 1.53046 * 109.49842 * 64.99399 * 13 2 1 16 16 C 1.53031 * 109.53726 * 178.68561 * 15 13 2 17 17 C 1.53196 * 109.31477 * 61.36734 * 16 15 13 18 18 N 1.46927 * 108.77413 * 305.36304 * 17 16 15 19 19 C 1.34776 * 120.63010 * 233.60595 * 18 17 16 20 20 O 1.21283 * 119.99717 * 180.02562 * 19 18 17 21 21 C 1.50695 * 120.00047 * 0.02562 * 19 18 17 22 22 S 1.81399 * 109.47177 * 180.02562 * 21 19 18 23 23 C 1.81398 * 101.92271 * 179.97438 * 22 21 19 24 24 O 1.42105 * 108.57827 * 294.48514 * 22 21 19 25 25 O 1.42103 * 108.58050 * 65.50631 * 22 21 19 26 26 C 1.46923 * 118.73554 * 53.60901 * 18 17 16 27 27 H 1.08998 * 109.46810 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46777 * 299.99509 * 1 2 3 29 29 H 1.08992 * 109.47247 * 59.99791 * 1 2 3 30 30 H 0.96997 * 120.00019 * 95.00518 * 4 2 1 31 31 H 0.97002 * 120.00238 * 179.97438 * 8 7 5 32 32 H 1.08995 * 109.46071 * 298.70848 * 15 13 2 33 33 H 1.09006 * 109.45640 * 58.66552 * 15 13 2 34 34 H 1.09004 * 109.49984 * 181.32240 * 16 15 13 35 35 H 1.09000 * 109.50061 * 301.41377 * 16 15 13 36 36 H 1.08993 * 109.58448 * 65.15176 * 17 16 15 37 37 H 1.08998 * 109.58752 * 185.57550 * 17 16 15 38 38 H 1.09006 * 109.47183 * 299.99730 * 21 19 18 39 39 H 1.08999 * 109.47237 * 59.99707 * 21 19 18 40 40 H 1.08992 * 109.47270 * 59.99706 * 23 22 21 41 41 H 1.09003 * 109.46994 * 179.97438 * 23 22 21 42 42 H 1.09002 * 109.47043 * 299.99665 * 23 22 21 43 43 H 1.09009 * 109.58590 * 186.60449 * 26 18 17 44 44 H 1.08995 * 109.59117 * 66.17682 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6905 1.1961 5 6 2.1492 -0.0074 2.3757 6 1 1.8919 1.0404 2.4243 7 6 2.6125 -0.6617 3.5089 8 7 2.9265 -1.9385 3.4496 9 14 2.7902 0.2700 5.1182 10 1 1.4675 0.8057 5.5288 11 1 3.3005 -0.6480 6.1679 12 1 3.7446 1.3932 4.9371 13 6 2.0401 -0.7212 -1.2492 14 1 3.1262 -0.8011 -1.2059 15 6 1.6354 0.0687 -2.4961 16 6 2.1732 -0.6345 -3.7443 17 6 1.5612 -2.0356 -3.8399 18 7 1.8220 -2.7522 -2.5841 19 6 2.4128 -3.9636 -2.5946 20 8 2.6222 -4.5452 -1.5511 21 6 2.8131 -4.5953 -3.9029 22 16 3.5764 -6.2101 -3.5861 23 6 3.9694 -6.7745 -5.2646 24 8 4.7927 -6.0053 -2.8804 25 8 2.5928 -7.0759 -3.0365 26 6 1.4264 -2.1232 -1.3166 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 2.2492 -1.6317 1.1525 31 1 3.2505 -2.3956 4.2415 32 1 0.5484 0.1271 -2.5521 33 1 2.0504 1.0751 -2.4389 34 1 1.9048 -0.0590 -4.6303 35 1 3.2582 -0.7152 -3.6775 36 1 0.4858 -1.9545 -3.9978 37 1 2.0147 -2.5766 -4.6703 38 1 1.9298 -4.7277 -4.5278 39 1 3.5268 -3.9497 -4.4148 40 1 4.6492 -6.0653 -5.7366 41 1 4.4435 -7.7549 -5.2166 42 1 3.0519 -6.8425 -5.8492 43 1 1.7912 -2.7221 -0.4820 44 1 0.3401 -2.0493 -1.2687 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753792322.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:26 Heat of formation + Delta-G solvation = -88.208322 kcal Electronic energy + Delta-G solvation = -25868.135177 eV Core-core repulsion = 22141.575403 eV Total energy + Delta-G solvation = -3726.559774 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -40.34682 -38.04242 -37.07956 -36.07564 -35.52672 -33.09293 -31.95204 -31.13801 -29.91315 -29.36711 -27.74545 -25.35564 -24.39685 -23.19743 -21.35819 -19.91027 -18.88124 -18.68002 -17.76272 -17.05933 -16.77665 -16.47257 -16.07714 -15.41861 -15.29869 -14.80684 -14.62669 -14.19108 -13.83160 -13.72864 -13.60001 -13.55425 -13.40320 -12.98174 -12.79271 -12.62812 -12.46960 -12.12488 -12.06161 -11.96222 -11.57402 -11.40691 -11.18961 -11.01315 -10.91883 -10.81102 -10.65791 -10.45685 -10.28918 -10.24981 -10.09856 -9.80827 -9.50225 -8.84778 -8.57999 -6.89107 -5.66334 -2.96905 -0.33531 2.42046 2.51570 2.79158 3.49413 3.53370 3.55629 3.56379 3.75603 4.13191 4.32969 4.43054 4.57626 4.66342 4.75667 4.77774 4.81561 4.92988 5.17326 5.24627 5.26664 5.32966 5.58594 5.62540 5.73209 5.77462 5.82059 5.92986 6.03094 6.10112 6.23070 6.32887 6.35884 6.50654 6.61551 6.73677 6.90392 7.12560 7.28524 7.76487 7.97512 8.50792 9.61472 10.19169 10.53045 11.55488 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.014928 B = 0.003662 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.268152 B = 7643.740024 C = 9067.526728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.181 3.819 3 H 0.049 0.951 4 N -0.726 5.726 5 C -0.243 4.243 6 H 0.069 0.931 7 C -0.011 4.011 8 N -0.928 5.928 9 Si 0.905 3.095 10 H -0.287 1.287 11 H -0.291 1.291 12 H -0.287 1.287 13 C -0.105 4.105 14 H 0.076 0.924 15 C -0.115 4.115 16 C -0.136 4.136 17 C 0.103 3.897 18 N -0.599 5.599 19 C 0.536 3.464 20 O -0.518 6.518 21 C -0.659 4.659 22 S 2.454 3.546 23 C -0.664 4.664 24 O -0.917 6.917 25 O -0.920 6.920 26 C 0.112 3.888 27 H 0.049 0.951 28 H 0.053 0.947 29 H 0.037 0.963 30 H 0.385 0.615 31 H 0.256 0.744 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.081 0.919 38 H 0.157 0.843 39 H 0.157 0.843 40 H 0.128 0.872 41 H 0.132 0.868 42 H 0.127 0.873 43 H 0.104 0.896 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.152 -3.077 -26.276 26.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.070 3.930 3 H 0.067 0.933 4 N -0.368 5.368 5 C -0.374 4.374 6 H 0.087 0.913 7 C -0.208 4.208 8 N -0.575 5.575 9 Si 0.736 3.264 10 H -0.214 1.214 11 H -0.217 1.217 12 H -0.214 1.214 13 C -0.125 4.125 14 H 0.094 0.906 15 C -0.153 4.153 16 C -0.174 4.174 17 C -0.020 4.020 18 N -0.332 5.332 19 C 0.321 3.679 20 O -0.394 6.394 21 C -0.786 4.786 22 S 2.630 3.370 23 C -0.813 4.813 24 O -0.914 6.914 25 O -0.917 6.917 26 C -0.009 4.009 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.056 0.944 30 H 0.220 0.780 31 H 0.066 0.934 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.100 0.900 38 H 0.175 0.825 39 H 0.175 0.825 40 H 0.147 0.853 41 H 0.150 0.850 42 H 0.146 0.854 43 H 0.122 0.878 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.881 -3.685 -24.759 25.103 hybrid contribution -0.022 0.750 -0.132 0.762 sum -1.904 -2.935 -24.891 25.136 Atomic orbital electron populations 1.22590 0.99575 1.00888 0.99961 1.20159 0.91811 0.95279 0.85713 0.93269 1.42495 1.78137 1.10842 1.05292 1.19150 1.37104 0.93793 0.87398 0.91334 1.24758 1.02091 0.95931 0.98006 1.69664 1.50286 1.08578 1.29009 0.86306 0.77660 0.78581 0.83819 1.21368 1.21717 1.21370 1.21815 1.01164 0.94086 0.95468 0.90585 1.21615 1.01139 0.99051 0.93473 1.21940 1.01185 0.95196 0.99069 1.21824 1.00962 0.93371 0.85837 1.48032 1.59272 1.17326 1.08595 1.19093 0.78371 0.82144 0.88286 1.90940 1.54009 1.61621 1.32807 1.30898 1.15335 1.25569 1.06806 1.07260 0.76080 0.76504 0.77157 1.30421 1.12149 1.13335 1.25399 1.93622 1.44635 1.84821 1.68285 1.93603 1.61326 1.62111 1.74659 1.22000 0.99677 0.94092 0.85117 0.93222 0.92818 0.94359 0.78022 0.93363 0.91409 0.91454 0.90796 0.91408 0.90944 0.90045 0.82547 0.82470 0.85342 0.84963 0.85384 0.87762 0.90620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.96 8.76 37.16 0.33 -2.63 16 2 C 0.18 3.51 2.67 -67.93 -0.18 3.33 16 3 H 0.05 0.97 8.08 -51.92 -0.42 0.55 16 4 N -0.73 -18.48 5.06 -53.43 -0.27 -18.75 16 5 C -0.24 -6.87 9.93 -15.06 -0.15 -7.02 16 6 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 7 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 8 N -0.93 -29.26 13.06 55.49 0.72 -28.54 16 9 Si 0.91 23.00 29.55 -169.99 -5.02 17.97 16 10 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 11 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 12 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 13 C -0.11 -1.69 2.27 -90.50 -0.21 -1.89 16 14 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 15 C -0.11 -1.32 4.89 -26.69 -0.13 -1.45 16 16 C -0.14 -1.19 6.08 -26.61 -0.16 -1.35 16 17 C 0.10 0.87 6.34 -3.71 -0.02 0.85 16 18 N -0.60 -8.02 2.97 -172.77 -0.51 -8.54 16 19 C 0.54 7.94 7.72 -10.99 -0.08 7.86 16 20 O -0.52 -10.62 15.04 2.55 0.04 -10.58 16 21 C -0.66 -5.25 4.64 36.00 0.17 -5.09 16 22 S 2.45 24.90 4.60 -107.50 -0.49 24.41 16 23 C -0.66 -2.68 10.62 101.05 1.07 -1.60 16 24 O -0.92 -13.91 17.95 -59.53 -1.07 -14.97 16 25 O -0.92 -13.45 17.95 -59.52 -1.07 -14.51 16 26 C 0.11 1.85 5.18 -3.71 -0.02 1.83 16 27 H 0.05 0.87 6.23 -51.93 -0.32 0.55 16 28 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.04 0.53 6.60 -51.93 -0.34 0.19 16 30 H 0.39 10.65 6.48 -40.82 -0.26 10.39 16 31 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 32 H 0.07 0.73 6.63 -51.93 -0.34 0.38 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.08 0.42 5.93 -51.93 -0.31 0.11 16 38 H 0.16 0.57 7.94 -51.92 -0.41 0.16 16 39 H 0.16 0.65 7.69 -51.92 -0.40 0.25 16 40 H 0.13 0.24 8.14 -51.93 -0.42 -0.19 16 41 H 0.13 0.50 8.14 -51.92 -0.42 0.08 16 42 H 0.13 0.21 8.14 -51.92 -0.42 -0.21 16 43 H 0.10 2.18 5.83 -51.92 -0.30 1.88 16 44 H 0.08 1.17 6.06 -51.93 -0.31 0.86 16 LS Contribution 358.97 15.07 5.41 5.41 Total: -1.00 -41.48 358.97 -8.53 -50.01 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -6.78 Total: 5.68 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: 0.51 Total: -7.59 kcal Atomic # 7 Polarization: -55.76 SS G_CDS: -0.06 Total: -55.82 kcal Atomic # 8 Polarization: -37.97 SS G_CDS: -2.10 Total: -40.07 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -5.02 Total: 17.97 kcal Atomic # 16 Polarization: 24.90 SS G_CDS: -0.49 Total: 24.41 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -41.48 -8.53 -50.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753792322.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.195 kcal (2) G-P(sol) polarization free energy of solvation -41.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds