Wall clock time and date at job start Tue Mar 31 2020 04:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47291 * 2 1 4 4 C 1.53003 * 109.47291 * 179.97438 * 3 2 1 5 5 S 1.81399 * 109.47235 * 179.97438 * 4 3 2 6 6 O 1.42101 * 108.57770 * 65.51068 * 5 4 3 7 7 O 1.42099 * 108.57858 * 294.48782 * 5 4 3 8 8 C 1.81400 * 101.91893 * 179.97438 * 5 4 3 9 9 C 1.50701 * 109.46575 * 180.02562 * 8 5 4 10 10 O 1.21278 * 120.00344 * 359.97438 * 9 8 5 11 11 N 1.34785 * 119.99530 * 180.02562 * 9 8 5 12 12 C 1.46495 * 120.00136 * 359.97438 * 11 9 8 13 13 C 1.46503 * 119.99784 * 179.97438 * 11 9 8 14 14 C 1.53496 * 114.20639 * 119.99964 * 13 11 9 15 15 N 1.47062 * 87.98485 * 87.71733 * 14 13 11 16 16 C 1.36939 * 136.05593 * 207.08750 * 15 14 13 17 17 H 1.07998 * 119.99870 * 7.87498 * 16 15 14 18 18 C 1.38817 * 119.99828 * 187.87353 * 16 15 14 19 19 N 1.31615 * 119.99974 * 195.16153 * 18 16 15 20 20 Si 1.86793 * 120.00136 * 15.16235 * 18 16 15 21 21 H 1.48500 * 109.47469 * 270.00049 * 20 18 16 22 22 H 1.48502 * 109.47202 * 30.00084 * 20 18 16 23 23 H 1.48503 * 109.47410 * 149.99824 * 20 18 16 24 24 C 1.47066 * 87.88897 * 27.34222 * 15 14 13 25 25 H 1.08997 * 109.47166 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46934 * 300.00696 * 1 2 3 27 27 H 1.09002 * 109.46893 * 60.00377 * 1 2 3 28 28 H 1.08997 * 109.47296 * 239.99663 * 2 1 3 29 29 H 1.09002 * 109.46893 * 119.99623 * 2 1 3 30 30 H 1.08997 * 109.47226 * 59.99620 * 3 2 1 31 31 H 1.09002 * 109.46844 * 299.99652 * 3 2 1 32 32 H 1.09000 * 109.46934 * 59.99304 * 4 3 2 33 33 H 1.09002 * 109.46893 * 299.99623 * 4 3 2 34 34 H 1.08990 * 109.47407 * 60.00186 * 8 5 4 35 35 H 1.09004 * 109.47222 * 299.99517 * 8 5 4 36 36 H 1.09005 * 109.47145 * 269.99911 * 12 11 9 37 37 H 1.09001 * 109.47497 * 29.99604 * 12 11 9 38 38 H 1.08999 * 109.47290 * 149.99891 * 12 11 9 39 39 H 1.09003 * 113.27924 * 346.93187 * 13 11 9 40 40 H 1.09002 * 113.46562 * 332.93888 * 14 13 11 41 41 H 1.09006 * 113.51939 * 202.50788 * 14 13 11 42 42 H 0.97010 * 119.99972 * 354.91283 * 19 18 16 43 43 H 1.08997 * 113.47168 * 87.43597 * 24 15 14 44 44 H 1.09000 * 113.47164 * 217.88422 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 16 4.1748 3.1527 -0.0001 6 8 3.7988 3.7664 1.2252 7 8 3.7999 3.7649 -1.2264 8 6 5.9731 2.9142 0.0016 9 6 6.6577 4.2568 0.0018 10 8 5.9976 5.2741 0.0004 11 7 8.0037 4.3267 0.0025 12 6 8.8011 3.0978 0.0035 13 6 8.6693 5.6318 0.0021 14 6 9.5782 5.8751 1.2149 15 7 10.6673 5.2357 0.4615 16 6 11.8073 4.5436 0.7723 17 1 12.0022 4.2554 1.7947 18 6 12.7123 4.2123 -0.2268 19 7 13.6409 3.3075 0.0000 20 14 12.6122 5.0505 -1.8931 21 1 11.7194 4.2702 -2.7870 22 1 12.0686 6.4222 -1.7253 23 1 13.9691 5.1257 -2.4918 24 6 9.9969 5.6723 -0.7725 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9563 0.8899 31 1 1.6768 1.9562 -0.8900 32 1 3.9338 0.9284 -0.8891 33 1 3.9330 0.9288 0.8909 34 1 6.2665 2.3565 -0.8877 35 1 6.2650 2.3578 0.8923 36 1 8.9983 2.7936 1.0315 37 1 8.2526 2.3082 -0.5101 38 1 9.7457 3.2771 -0.5099 39 1 7.9963 6.4586 -0.2251 40 1 9.2776 5.3168 2.1015 41 1 9.7546 6.9308 1.4214 42 1 13.7401 2.9259 0.8863 43 1 10.2833 6.6747 -1.0908 44 1 10.0530 4.9413 -1.5790 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754587812.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:25:23 Heat of formation + Delta-G solvation = -40.120664 kcal Electronic energy + Delta-G solvation = -25314.627447 eV Core-core repulsion = 21590.152911 eV Total energy + Delta-G solvation = -3724.474537 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.24830 -38.24872 -37.07324 -36.33070 -35.95755 -34.51033 -32.47354 -31.03973 -30.47296 -28.17608 -26.40777 -25.36318 -24.81869 -22.89424 -21.71563 -20.61110 -18.96465 -18.65465 -17.76227 -17.33660 -16.77126 -16.61443 -16.28200 -15.98101 -15.59980 -15.23791 -14.78865 -14.35517 -13.96744 -13.93567 -13.82099 -13.46979 -13.24449 -13.23315 -12.88936 -12.59750 -12.15781 -12.13208 -12.11654 -12.07404 -11.99520 -11.72359 -11.61012 -11.43138 -11.15616 -11.10965 -10.93240 -10.68363 -10.58832 -10.31059 -10.07487 -9.73976 -9.33236 -8.80929 -8.36921 -7.30033 -6.40462 -3.34120 -0.32754 2.44885 2.54748 2.88580 3.31391 3.40823 3.54051 3.55021 3.77965 4.12565 4.25788 4.27153 4.48057 4.51424 4.58548 4.65523 4.79406 4.90654 4.95229 5.05388 5.06281 5.21961 5.29065 5.32522 5.42540 5.43546 5.61954 5.70352 5.71390 5.80911 5.84096 5.90844 6.14636 6.15536 6.24263 6.32074 6.53414 6.79356 6.99513 7.49256 8.02917 8.13492 8.86479 9.38681 10.25957 11.08527 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.026922 B = 0.002889 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.779044 B = 9688.524750 C =10049.837905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.117 4.117 3 C -0.114 4.114 4 C -0.621 4.621 5 S 2.451 3.549 6 O -0.920 6.920 7 O -0.920 6.920 8 C -0.657 4.657 9 C 0.540 3.460 10 O -0.540 6.540 11 N -0.567 5.567 12 C 0.078 3.922 13 C 0.094 3.906 14 C 0.106 3.894 15 N -0.623 5.623 16 C -0.303 4.303 17 H 0.082 0.918 18 C -0.023 4.023 19 N -0.930 5.930 20 Si 1.058 2.942 21 H -0.294 1.294 22 H -0.281 1.281 23 H -0.294 1.294 24 C 0.091 3.909 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.134 0.866 33 H 0.134 0.866 34 H 0.159 0.841 35 H 0.159 0.841 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.103 0.897 39 H 0.111 0.889 40 H 0.049 0.951 41 H 0.049 0.951 42 H 0.262 0.738 43 H 0.061 0.939 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.673 -7.816 -0.925 23.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.155 4.155 3 C -0.152 4.152 4 C -0.749 4.749 5 S 2.628 3.372 6 O -0.917 6.917 7 O -0.917 6.917 8 C -0.784 4.784 9 C 0.325 3.675 10 O -0.419 6.419 11 N -0.297 5.297 12 C -0.064 4.064 13 C -0.011 4.011 14 C -0.021 4.021 15 N -0.351 5.351 16 C -0.429 4.429 17 H 0.100 0.900 18 C -0.222 4.222 19 N -0.571 5.571 20 Si 0.890 3.110 21 H -0.222 1.222 22 H -0.208 1.208 23 H -0.222 1.222 24 C -0.035 4.035 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.152 0.848 33 H 0.152 0.848 34 H 0.177 0.823 35 H 0.177 0.823 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.121 0.879 39 H 0.128 0.872 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.072 0.928 43 H 0.079 0.921 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -21.516 -6.621 -2.363 22.635 hybrid contribution 0.358 -0.937 1.640 1.922 sum -21.158 -7.557 -0.723 22.479 Atomic orbital electron populations 1.21817 0.95383 1.01987 1.02299 1.21491 0.96192 0.95251 1.02610 1.21384 0.89894 0.99752 1.04205 1.30483 1.07235 1.25410 1.11774 1.07459 0.76533 0.77335 0.75852 1.93579 1.79914 1.72421 1.45816 1.93578 1.79937 1.72483 1.45746 1.30861 1.28027 1.06149 1.13363 1.19039 0.82988 0.88186 0.77241 1.90821 1.63976 1.35880 1.51244 1.47239 1.04336 1.07927 1.70208 1.21973 0.97446 0.84053 1.02957 1.22643 0.93939 0.84648 0.99889 1.22813 0.87554 0.96764 0.94996 1.46450 1.25896 1.61611 1.01177 1.20122 0.96822 1.29226 0.96764 0.90024 1.25742 0.94232 0.98662 1.03606 1.70910 1.36615 1.26121 1.23494 0.83831 0.75498 0.76264 0.75449 1.22154 1.20762 1.22173 1.23117 0.88901 0.99033 0.92433 0.92414 0.92394 0.92387 0.91500 0.91505 0.90004 0.89995 0.84780 0.84770 0.82301 0.82328 0.92074 0.92373 0.87893 0.87151 0.93312 0.93311 0.92791 0.92139 0.92512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.84 9.91 37.16 0.37 -0.47 16 2 C -0.12 -0.65 5.93 -26.73 -0.16 -0.81 16 3 C -0.11 -0.79 5.22 -26.73 -0.14 -0.93 16 4 C -0.62 -3.71 5.81 37.16 0.22 -3.49 16 5 S 2.45 27.15 3.96 -107.50 -0.43 26.72 16 6 O -0.92 -13.72 17.94 -59.54 -1.07 -14.78 16 7 O -0.92 -13.62 17.95 -59.51 -1.07 -14.69 16 8 C -0.66 -6.61 4.84 36.01 0.17 -6.44 16 9 C 0.54 8.64 7.69 -10.98 -0.08 8.55 16 10 O -0.54 -10.46 15.13 2.55 0.04 -10.42 16 11 N -0.57 -9.48 3.12 -173.55 -0.54 -10.02 16 12 C 0.08 1.22 9.35 59.84 0.56 1.78 16 13 C 0.09 1.69 4.67 -67.67 -0.32 1.38 16 14 C 0.11 2.05 8.31 -8.50 -0.07 1.98 16 15 N -0.62 -14.17 2.33 -184.61 -0.43 -14.60 16 16 C -0.30 -8.06 10.65 -15.06 -0.16 -8.22 16 17 H 0.08 2.33 8.06 -52.49 -0.42 1.90 16 18 C -0.02 -0.63 5.50 -17.43 -0.10 -0.73 16 19 N -0.93 -27.73 13.70 55.49 0.76 -26.97 16 20 Si 1.06 25.24 25.50 -169.99 -4.34 20.90 16 21 H -0.29 -6.65 6.97 56.52 0.39 -6.25 16 22 H -0.28 -6.28 5.66 56.52 0.32 -5.96 16 23 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 24 C 0.09 1.83 4.64 -8.36 -0.04 1.79 16 25 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 26 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.13 0.47 8.14 -51.92 -0.42 0.05 16 33 H 0.13 0.48 8.14 -51.92 -0.42 0.06 16 34 H 0.16 1.04 7.40 -51.93 -0.38 0.66 16 35 H 0.16 1.07 8.11 -51.92 -0.42 0.65 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.06 0.66 6.44 -51.93 -0.33 0.33 16 38 H 0.10 1.97 5.41 -51.93 -0.28 1.69 16 39 H 0.11 1.91 7.29 -51.93 -0.38 1.53 16 40 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.26 7.73 8.73 -40.82 -0.36 7.37 16 43 H 0.06 1.18 7.02 -51.93 -0.36 0.82 16 44 H 0.06 1.15 5.38 -51.93 -0.28 0.87 16 LS Contribution 363.45 15.07 5.48 5.48 Total: -1.00 -37.36 363.45 -8.52 -45.88 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: -7.18 Total: -1.87 kcal Atomic # 6 Polarization: -5.88 SS G_CDS: 0.25 Total: -5.63 kcal Atomic # 7 Polarization: -51.38 SS G_CDS: -0.21 Total: -51.59 kcal Atomic # 8 Polarization: -37.80 SS G_CDS: -2.10 Total: -39.90 kcal Atomic # 14 Polarization: 25.24 SS G_CDS: -4.34 Total: 20.90 kcal Atomic # 16 Polarization: 27.15 SS G_CDS: -0.43 Total: 26.72 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -37.36 -8.52 -45.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754587812.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.761 kcal (2) G-P(sol) polarization free energy of solvation -37.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds