Wall clock time and date at job start Tue Mar 31 2020 04:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47573 * 2 1 4 4 C 1.50705 * 109.46904 * 119.99929 * 2 1 3 5 5 O 1.21278 * 119.99973 * 119.99744 * 4 2 1 6 6 N 1.34776 * 120.00203 * 299.99783 * 4 2 1 7 7 C 1.46499 * 120.00253 * 179.97438 * 6 4 2 8 8 C 1.53001 * 109.47062 * 180.85152 * 7 6 4 9 9 N 1.46501 * 112.84916 * 292.10757 * 8 7 6 10 10 C 1.36943 * 120.00115 * 294.89211 * 9 8 7 11 11 H 1.07997 * 119.99911 * 353.68285 * 10 9 8 12 12 C 1.38807 * 120.00116 * 173.69027 * 10 9 8 13 13 N 1.31620 * 119.99944 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 120.00445 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46812 * 59.99413 * 14 12 10 16 16 H 1.48498 * 109.47562 * 180.02562 * 14 12 10 17 17 H 1.48508 * 109.46732 * 300.00168 * 14 12 10 18 18 C 1.53773 * 113.61358 * 160.91678 * 8 7 6 19 19 C 1.53958 * 87.01861 * 220.04587 * 18 8 7 20 20 C 1.53776 * 87.11171 * 25.36245 * 19 18 8 21 21 S 1.81396 * 109.47068 * 239.99445 * 2 1 3 22 22 C 1.81399 * 101.91989 * 60.00459 * 21 2 1 23 23 O 1.42103 * 108.57946 * 174.49029 * 21 2 1 24 24 O 1.42101 * 108.58239 * 305.51788 * 21 2 1 25 25 H 1.09005 * 109.47308 * 300.00098 * 1 2 3 26 26 H 1.08996 * 109.47004 * 59.99623 * 1 2 3 27 27 H 1.08998 * 109.47615 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47367 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.47118 * 299.99783 * 3 2 1 30 30 H 1.09005 * 109.46883 * 59.99642 * 3 2 1 31 31 H 0.97003 * 119.99841 * 359.97438 * 6 4 2 32 32 H 1.08998 * 109.47132 * 300.85191 * 7 6 4 33 33 H 1.09001 * 109.46839 * 60.85276 * 7 6 4 34 34 H 0.97002 * 120.00239 * 114.88096 * 9 8 7 35 35 H 0.97001 * 120.00175 * 180.02562 * 13 12 10 36 36 H 1.09004 * 113.61739 * 334.56117 * 18 8 7 37 37 H 1.09004 * 113.62381 * 105.46754 * 18 8 7 38 38 H 1.08995 * 113.53408 * 270.80481 * 19 18 8 39 39 H 1.09002 * 113.66694 * 139.93040 * 19 18 8 40 40 H 1.08998 * 113.61208 * 220.09525 * 20 19 18 41 41 H 1.09001 * 113.61501 * 89.18317 * 20 19 18 42 42 H 1.09002 * 109.47072 * 59.99833 * 22 21 2 43 43 H 1.09001 * 109.47484 * 180.02562 * 22 21 2 44 44 H 1.08997 * 109.47263 * 299.99960 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7295 -1.6965 1.1193 6 7 1.7067 -0.2500 2.4546 7 6 2.1945 -0.9409 3.6508 8 6 1.6672 -0.2319 4.8999 9 7 2.2425 1.1030 5.0820 10 6 3.5819 1.2434 5.3300 11 1 4.1954 0.3697 5.4927 12 6 4.1511 2.5087 5.3723 13 7 3.4034 3.5736 5.1736 14 14 5.9780 2.7004 5.7113 15 1 6.7532 1.9932 4.6605 16 1 6.3343 4.1420 5.7044 17 1 6.2987 2.1181 7.0393 18 6 1.7144 -1.1011 6.1676 19 6 0.3429 -0.5036 6.5312 20 6 0.1349 -0.2649 5.0264 21 16 2.1346 -0.8553 -1.4810 22 6 1.4229 0.1513 -2.8117 23 8 3.5496 -0.7332 -1.5283 24 8 1.5478 -2.1486 -1.5284 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 3.1300 1.4424 0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.1494 0.5390 2.5436 32 1 1.8432 -1.9727 3.6431 33 1 3.2844 -0.9281 3.6586 34 1 1.6747 1.8876 5.0266 35 1 3.8012 4.4578 5.2028 36 1 1.6843 -2.1716 5.9645 37 1 2.5100 -0.8226 6.8587 38 1 0.4090 0.4150 7.1141 39 1 -0.3507 -1.2281 6.9583 40 1 -0.3426 0.6878 4.7974 41 1 -0.3277 -1.1064 4.5106 42 1 1.7895 1.1745 -2.7291 43 1 1.7152 -0.2629 -3.7767 44 1 0.3361 0.1470 -2.7291 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754988140.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:23:21 Heat of formation + Delta-G solvation = -72.593992 kcal Electronic energy + Delta-G solvation = -26421.145843 eV Core-core repulsion = 22695.263157 eV Total energy + Delta-G solvation = -3725.882686 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -40.00786 -38.67436 -37.01179 -35.99363 -35.28671 -33.94339 -33.31190 -30.09696 -29.71165 -27.71986 -27.31202 -25.36071 -24.17528 -23.59583 -21.83762 -20.32785 -18.80126 -18.27702 -17.63691 -17.12851 -16.74153 -15.93134 -15.81854 -15.48478 -15.13137 -14.89171 -14.53333 -14.17335 -13.87511 -13.64454 -13.39216 -13.30811 -13.24217 -13.17562 -12.70172 -12.45374 -12.32990 -12.12262 -12.02501 -11.97092 -11.82983 -11.58933 -11.29416 -11.09046 -11.05404 -10.86848 -10.51335 -10.41949 -10.30769 -10.18714 -9.81502 -9.73372 -9.54548 -8.93086 -8.66425 -7.10617 -5.88149 -3.18142 -0.16545 2.61976 2.66898 3.14206 3.40265 3.44596 3.47057 3.81249 3.87271 4.32478 4.36450 4.49883 4.54213 4.67127 4.83955 5.10239 5.11478 5.18353 5.21090 5.25373 5.29127 5.37308 5.42691 5.46111 5.47315 5.71748 5.73775 5.95775 5.98445 6.06236 6.13691 6.25907 6.32356 6.46804 6.63374 6.77813 6.89195 6.97332 7.65390 7.70547 8.30587 8.33551 9.42287 9.94382 10.29921 11.33636 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013812 B = 0.004499 C = 0.003839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.665850 B = 6222.470789 C = 7292.583593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.575 4.575 3 C -0.140 4.140 4 C 0.544 3.456 5 O -0.541 6.541 6 N -0.686 5.686 7 C 0.116 3.884 8 C 0.173 3.827 9 N -0.699 5.699 10 C -0.238 4.238 11 H 0.071 0.929 12 C -0.006 4.006 13 N -0.932 5.932 14 Si 0.904 3.096 15 H -0.284 1.284 16 H -0.291 1.291 17 H -0.285 1.285 18 C -0.150 4.150 19 C -0.128 4.128 20 C -0.145 4.145 21 S 2.454 3.546 22 C -0.666 4.666 23 O -0.920 6.920 24 O -0.925 6.925 25 H 0.085 0.915 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.403 0.597 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.386 0.614 35 H 0.256 0.744 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.081 0.919 39 H 0.055 0.945 40 H 0.064 0.936 41 H 0.078 0.922 42 H 0.132 0.868 43 H 0.131 0.869 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.097 -3.916 -11.473 16.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.665 4.665 3 C -0.198 4.198 4 C 0.327 3.673 5 O -0.419 6.419 6 N -0.334 5.334 7 C -0.010 4.010 8 C 0.080 3.920 9 N -0.340 5.340 10 C -0.368 4.368 11 H 0.089 0.911 12 C -0.203 4.203 13 N -0.579 5.579 14 Si 0.735 3.265 15 H -0.211 1.211 16 H -0.217 1.217 17 H -0.212 1.212 18 C -0.190 4.190 19 C -0.165 4.165 20 C -0.183 4.183 21 S 2.630 3.370 22 C -0.815 4.815 23 O -0.917 6.917 24 O -0.922 6.922 25 H 0.104 0.896 26 H 0.097 0.903 27 H 0.100 0.900 28 H 0.103 0.897 29 H 0.095 0.905 30 H 0.109 0.891 31 H 0.238 0.762 32 H 0.078 0.922 33 H 0.092 0.908 34 H 0.221 0.779 35 H 0.066 0.934 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.100 0.900 39 H 0.073 0.927 40 H 0.083 0.917 41 H 0.096 0.904 42 H 0.150 0.850 43 H 0.149 0.851 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -9.884 -5.321 -11.533 16.094 hybrid contribution 0.131 1.695 0.317 1.730 sum -9.753 -3.626 -11.216 15.299 Atomic orbital electron populations 1.21795 0.88032 1.04694 1.05097 1.30455 1.07995 1.10973 1.17077 1.21813 1.03465 0.89315 1.05183 1.18978 0.80451 0.83910 0.83964 1.90817 1.38375 1.26430 1.86326 1.45543 1.51870 1.31280 1.04715 1.22022 1.00606 0.94504 0.83877 1.20830 0.91355 0.88446 0.91406 1.42054 1.06876 1.00081 1.84943 1.19062 0.84780 0.92284 1.40723 0.91138 1.24705 0.97790 0.95484 1.02280 1.69637 1.34662 0.97369 1.56264 0.86315 0.85337 0.76637 0.78224 1.21094 1.21712 1.21196 1.23339 0.97908 0.98134 0.99647 1.22655 0.97123 1.00876 0.95878 1.23152 0.96469 1.01314 0.97374 1.07393 0.76050 0.76305 0.77221 1.30465 1.14234 1.17120 1.19684 1.93581 1.26519 1.86479 1.85146 1.93556 1.79483 1.33831 1.85335 0.89593 0.90330 0.89958 0.89667 0.90486 0.89091 0.76186 0.92226 0.90809 0.77941 0.93437 0.91235 0.90621 0.90029 0.92673 0.91690 0.90373 0.84951 0.85069 0.85116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 8.12 37.16 0.30 -0.85 16 2 C -0.57 -6.99 0.72 -91.77 -0.07 -7.06 16 3 C -0.14 -1.50 8.12 37.15 0.30 -1.19 16 4 C 0.54 9.25 6.50 -10.98 -0.07 9.18 16 5 O -0.54 -11.42 15.62 2.56 0.04 -11.38 16 6 N -0.69 -11.16 5.21 -60.29 -0.31 -11.48 16 7 C 0.12 2.09 5.08 -4.04 -0.02 2.07 16 8 C 0.17 3.06 0.80 -131.01 -0.10 2.95 16 9 N -0.70 -15.41 5.18 -46.48 -0.24 -15.65 16 10 C -0.24 -6.09 9.04 -15.06 -0.14 -6.23 16 11 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 12 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 13 N -0.93 -26.18 13.07 55.49 0.73 -25.45 16 14 Si 0.90 21.89 29.55 -169.99 -5.02 16.87 16 15 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 16 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 17 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 18 C -0.15 -2.49 7.29 -25.83 -0.19 -2.68 16 19 C -0.13 -1.90 8.00 -25.83 -0.21 -2.11 16 20 C -0.15 -2.09 7.05 -25.92 -0.18 -2.28 16 21 S 2.45 31.86 3.65 -107.50 -0.39 31.47 16 22 C -0.67 -4.45 9.72 101.05 0.98 -3.47 16 23 O -0.92 -15.84 17.76 -59.53 -1.06 -16.89 16 24 O -0.92 -14.88 17.76 -59.53 -1.06 -15.94 16 25 H 0.09 0.65 7.57 -51.93 -0.39 0.26 16 26 H 0.08 0.36 6.56 -51.93 -0.34 0.02 16 27 H 0.08 0.72 8.06 -51.93 -0.42 0.30 16 28 H 0.08 1.08 8.06 -51.93 -0.42 0.66 16 29 H 0.08 0.49 6.56 -51.93 -0.34 0.15 16 30 H 0.09 1.01 7.56 -51.93 -0.39 0.61 16 31 H 0.40 5.84 7.14 -40.82 -0.29 5.55 16 32 H 0.06 1.01 8.02 -51.93 -0.42 0.59 16 33 H 0.07 1.57 7.80 -51.93 -0.41 1.16 16 34 H 0.39 9.02 7.87 -40.82 -0.32 8.70 16 35 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 36 H 0.07 1.02 8.01 -51.93 -0.42 0.61 16 37 H 0.08 1.42 7.87 -51.93 -0.41 1.01 16 38 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 39 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.06 0.92 8.09 -51.93 -0.42 0.50 16 41 H 0.08 1.00 8.10 -51.93 -0.42 0.58 16 42 H 0.13 0.63 6.87 -51.92 -0.36 0.27 16 43 H 0.13 0.74 8.14 -51.92 -0.42 0.31 16 44 H 0.13 0.54 6.87 -51.93 -0.36 0.18 16 LS Contribution 366.61 15.07 5.52 5.52 Total: -1.00 -35.52 366.61 -8.21 -43.74 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: -6.93 Total: 11.11 kcal Atomic # 6 Polarization: -12.44 SS G_CDS: 0.51 Total: -11.92 kcal Atomic # 7 Polarization: -52.74 SS G_CDS: 0.17 Total: -52.57 kcal Atomic # 8 Polarization: -42.14 SS G_CDS: -2.07 Total: -44.21 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Atomic # 16 Polarization: 31.86 SS G_CDS: -0.39 Total: 31.47 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.52 -8.21 -43.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754988140.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.858 kcal (2) G-P(sol) polarization free energy of solvation -35.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds