Wall clock time and date at job start Tue Mar 31 2020 05:03:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47045 * 2 1 4 4 S 1.81400 * 109.46879 * 119.99674 * 2 1 3 5 5 O 1.42105 * 108.57777 * 70.51534 * 4 2 1 6 6 O 1.42097 * 108.58116 * 299.48704 * 4 2 1 7 7 C 1.81400 * 101.91926 * 184.99824 * 4 2 1 8 8 C 1.50706 * 109.47256 * 179.97438 * 7 4 2 9 9 O 1.21279 * 119.99507 * 0.02562 * 8 7 4 10 10 N 1.34774 * 120.00020 * 180.02562 * 8 7 4 11 11 C 1.46495 * 119.99828 * 0.02562 * 10 8 7 12 12 C 1.46496 * 119.99544 * 180.02562 * 10 8 7 13 13 C 1.53787 * 113.61301 * 217.49546 * 12 10 8 14 14 C 1.53778 * 87.08525 * 220.02033 * 13 12 10 15 15 N 1.46498 * 113.61344 * 270.88471 * 14 13 12 16 16 C 1.36933 * 120.00042 * 252.49343 * 15 14 13 17 17 H 1.07997 * 120.00301 * 0.02562 * 16 15 14 18 18 C 1.38816 * 120.00425 * 180.02562 * 16 15 14 19 19 N 1.31621 * 119.99539 * 0.02562 * 18 16 15 20 20 Si 1.86789 * 120.00458 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47445 * 89.99818 * 20 18 16 22 22 H 1.48496 * 109.47501 * 210.00237 * 20 18 16 23 23 H 1.48507 * 109.47038 * 330.00170 * 20 18 16 24 24 C 1.53781 * 113.61446 * 120.00170 * 12 10 8 25 25 H 1.08996 * 109.47451 * 299.99867 * 1 2 3 26 26 H 1.09001 * 109.47481 * 60.00422 * 1 2 3 27 27 H 1.09001 * 109.47038 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47145 * 239.99790 * 2 1 3 29 29 H 1.09003 * 109.47208 * 299.99599 * 3 2 1 30 30 H 1.08998 * 109.47524 * 59.99407 * 3 2 1 31 31 H 1.08998 * 109.47083 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.46713 * 60.00236 * 7 4 2 33 33 H 1.09000 * 109.47712 * 300.00545 * 7 4 2 34 34 H 1.08997 * 109.47477 * 90.00366 * 11 10 8 35 35 H 1.09004 * 109.46971 * 209.99938 * 11 10 8 36 36 H 1.08993 * 109.47768 * 330.00002 * 11 10 8 37 37 H 1.08999 * 112.85664 * 348.80314 * 12 10 8 38 38 H 1.09001 * 113.61302 * 334.57228 * 13 12 10 39 39 H 1.09000 * 113.61187 * 105.47029 * 13 12 10 40 40 H 1.08993 * 113.61544 * 139.97795 * 14 13 12 41 41 H 0.97004 * 119.99895 * 72.49692 * 15 14 13 42 42 H 0.96997 * 119.99900 * 180.02562 * 19 18 16 43 43 H 1.08991 * 113.61772 * 254.52599 * 24 12 10 44 44 H 1.09000 * 113.61394 * 25.42965 * 24 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 16 2.1346 -0.8551 1.4812 5 8 1.8619 -2.2431 1.3457 6 8 1.6604 -0.1636 2.6284 7 6 3.9265 -0.6031 1.3540 8 6 4.6105 -1.2589 2.5259 9 8 3.9537 -1.8395 3.3640 10 7 5.9519 -1.2002 2.6425 11 6 6.7450 -0.4984 1.6304 12 6 6.6167 -1.8383 3.7814 13 6 7.8173 -1.0418 4.3192 14 6 8.5354 -2.3908 4.4901 15 7 8.3032 -3.0182 5.7934 16 6 9.3056 -3.0516 6.7256 17 1 10.2674 -2.6151 6.5003 18 6 9.0858 -3.6466 7.9604 19 7 7.9139 -4.1790 8.2349 20 14 10.4531 -3.6915 9.2323 21 1 10.3783 -2.4765 10.0827 22 1 10.2999 -4.9001 10.0813 23 1 11.7683 -3.7336 8.5439 24 6 7.6221 -2.9288 3.3759 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9564 0.8899 31 1 3.1300 1.4425 -0.0005 32 1 4.1444 0.4649 1.3579 33 1 4.2907 -1.0448 0.4265 34 1 6.8569 0.5472 1.9172 35 1 7.7289 -0.9615 1.5544 36 1 6.2397 -0.5586 0.6666 37 1 5.9184 -2.1545 4.5564 38 1 8.2790 -0.3925 3.5753 39 1 7.6162 -0.5317 5.2612 40 1 9.5896 -2.3622 4.2149 41 1 7.4392 -3.4100 5.9960 42 1 7.7601 -4.5945 9.0978 43 1 7.2637 -3.9422 3.5565 44 1 8.0306 -2.7955 2.3742 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755865268.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:39 Heat of formation + Delta-G solvation = -64.649550 kcal Electronic energy + Delta-G solvation = -25245.605653 eV Core-core repulsion = 21520.067464 eV Total energy + Delta-G solvation = -3725.538189 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -40.29596 -38.20746 -37.17445 -36.15940 -35.57015 -34.97885 -33.07855 -30.88476 -29.61180 -27.76968 -27.23265 -25.16813 -24.42018 -23.20280 -22.71677 -19.98445 -18.86472 -18.32853 -17.95680 -17.35018 -16.78770 -16.72821 -16.35143 -15.73869 -15.56913 -14.95652 -14.84368 -14.05775 -13.88972 -13.79752 -13.69943 -13.56687 -13.12105 -12.90684 -12.83081 -12.73278 -12.42616 -12.18942 -12.11917 -12.07437 -12.01520 -11.93617 -11.91926 -11.57194 -11.22336 -10.87252 -10.78715 -10.56917 -10.31012 -10.17994 -10.15660 -9.70048 -9.65850 -8.91997 -8.57846 -7.02118 -5.78676 -3.09676 -0.39321 2.36383 2.45682 2.78742 3.43197 3.47692 3.48749 3.50251 3.65177 4.02468 4.05899 4.14318 4.51299 4.55770 4.59763 4.67876 4.91192 4.94099 5.00772 5.05914 5.07405 5.10702 5.22983 5.32083 5.35263 5.45293 5.48172 5.50817 5.53414 5.83609 5.93413 6.02331 6.13620 6.35433 6.46609 6.66986 6.70998 6.95136 7.30405 7.68587 7.93275 8.38936 9.49649 10.05644 10.39587 11.43249 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.028956 B = 0.002639 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.752427 B =10608.667353 C =11113.046589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.584 4.584 3 C -0.149 4.149 4 S 2.449 3.551 5 O -0.919 6.919 6 O -0.915 6.915 7 C -0.660 4.660 8 C 0.536 3.464 9 O -0.526 6.526 10 N -0.590 5.590 11 C 0.072 3.928 12 C 0.120 3.880 13 C -0.182 4.182 14 C 0.174 3.826 15 N -0.705 5.705 16 C -0.248 4.248 17 H 0.073 0.927 18 C -0.011 4.011 19 N -0.928 5.928 20 Si 0.910 3.090 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.281 1.281 24 C -0.169 4.169 25 H 0.076 0.924 26 H 0.081 0.919 27 H 0.073 0.927 28 H 0.137 0.863 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.159 0.841 33 H 0.158 0.842 34 H 0.060 0.940 35 H 0.081 0.919 36 H 0.068 0.932 37 H 0.122 0.878 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.069 0.931 41 H 0.387 0.613 42 H 0.257 0.743 43 H 0.073 0.927 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.495 13.167 -24.116 29.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.693 4.693 3 C -0.206 4.206 4 S 2.625 3.375 5 O -0.916 6.916 6 O -0.912 6.912 7 C -0.787 4.787 8 C 0.321 3.679 9 O -0.403 6.403 10 N -0.322 5.322 11 C -0.071 4.071 12 C 0.018 3.982 13 C -0.224 4.224 14 C 0.060 3.940 15 N -0.344 5.344 16 C -0.379 4.379 17 H 0.091 0.909 18 C -0.207 4.207 19 N -0.575 5.575 20 Si 0.741 3.259 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.207 1.207 24 C -0.209 4.209 25 H 0.095 0.905 26 H 0.100 0.900 27 H 0.092 0.908 28 H 0.155 0.845 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.088 0.912 32 H 0.176 0.824 33 H 0.176 0.824 34 H 0.078 0.922 35 H 0.100 0.900 36 H 0.087 0.913 37 H 0.140 0.860 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.087 0.913 41 H 0.222 0.778 42 H 0.067 0.933 43 H 0.092 0.908 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -10.113 12.385 -22.880 27.913 hybrid contribution 1.005 0.422 -0.161 1.102 sum -9.108 12.807 -23.041 27.890 Atomic orbital electron populations 1.21632 0.89592 1.04085 1.04799 1.30207 1.07495 1.09850 1.21703 1.21780 1.01425 0.92217 1.05219 1.07734 0.76618 0.76100 0.77023 1.93588 1.82106 1.29562 1.86338 1.93578 1.77152 1.75631 1.44814 1.30929 1.28447 1.11837 1.07536 1.19120 0.83282 0.80282 0.85177 1.90888 1.63765 1.43465 1.42186 1.47835 1.05065 1.53756 1.25500 1.21831 0.97320 0.97180 0.90783 1.22943 0.93146 0.94530 0.87564 1.24335 0.96740 1.00439 1.00866 1.20885 0.96060 0.90549 0.86480 1.42228 1.14801 1.66913 1.10445 1.19249 0.93113 1.31783 0.93746 0.90926 1.24807 0.97052 1.00812 0.98060 1.69673 1.21801 1.42878 1.23171 0.86158 0.81106 0.77120 0.81556 1.21640 1.21718 1.20708 1.23987 0.97943 0.99259 0.99715 0.90470 0.89962 0.90797 0.84504 0.90097 0.90199 0.91173 0.82364 0.82439 0.92158 0.90013 0.91289 0.85976 0.90907 0.90715 0.91272 0.77845 0.93280 0.90810 0.90392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.86 9.19 37.16 0.34 -0.52 16 2 C -0.58 -3.31 3.35 -26.73 -0.09 -3.40 16 3 C -0.15 -0.58 8.90 37.15 0.33 -0.25 16 4 S 2.45 27.18 3.50 -107.50 -0.38 26.80 16 5 O -0.92 -13.98 17.95 -59.52 -1.07 -15.04 16 6 O -0.91 -13.71 17.91 -59.54 -1.07 -14.78 16 7 C -0.66 -5.71 4.23 36.01 0.15 -5.56 16 8 C 0.54 8.02 7.69 -10.98 -0.08 7.93 16 9 O -0.53 -10.62 15.10 2.55 0.04 -10.58 16 10 N -0.59 -8.04 3.08 -173.01 -0.53 -8.58 16 11 C 0.07 0.60 8.84 59.84 0.53 1.13 16 12 C 0.12 2.04 4.08 -67.12 -0.27 1.77 16 13 C -0.18 -3.04 7.31 -25.92 -0.19 -3.23 16 14 C 0.17 3.36 4.56 -67.12 -0.31 3.05 16 15 N -0.71 -17.74 5.31 -52.64 -0.28 -18.02 16 16 C -0.25 -6.85 9.97 -15.06 -0.15 -7.01 16 17 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 18 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 19 N -0.93 -28.45 13.06 55.49 0.72 -27.73 16 20 Si 0.91 22.41 29.55 -169.99 -5.02 17.38 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 22 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 C -0.17 -2.79 7.36 -25.91 -0.19 -2.98 16 25 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.14 0.41 8.14 -51.92 -0.42 -0.01 16 29 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.12 6.39 -51.93 -0.33 -0.21 16 32 H 0.16 0.76 6.74 -51.92 -0.35 0.41 16 33 H 0.16 0.70 7.40 -51.92 -0.38 0.32 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.08 0.65 6.34 -51.93 -0.33 0.32 16 36 H 0.07 0.36 6.44 -51.93 -0.33 0.02 16 37 H 0.12 2.53 7.23 -51.93 -0.38 2.15 16 38 H 0.07 0.97 6.72 -51.93 -0.35 0.63 16 39 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 40 H 0.07 1.29 8.10 -51.93 -0.42 0.87 16 41 H 0.39 10.54 7.90 -40.82 -0.32 10.22 16 42 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 43 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 44 H 0.08 1.04 6.92 -51.93 -0.36 0.68 16 LS Contribution 367.38 15.07 5.54 5.54 Total: -1.00 -39.43 367.38 -8.98 -48.42 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -6.91 Total: 6.04 kcal Atomic # 6 Polarization: -9.42 SS G_CDS: -0.03 Total: -9.45 kcal Atomic # 7 Polarization: -54.24 SS G_CDS: -0.09 Total: -54.33 kcal Atomic # 8 Polarization: -38.30 SS G_CDS: -2.10 Total: -40.40 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.38 kcal Atomic # 16 Polarization: 27.18 SS G_CDS: -0.38 Total: 26.80 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -39.43 -8.98 -48.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755865268.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.234 kcal (2) G-P(sol) polarization free energy of solvation -39.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds