Wall clock time and date at job start Tue Mar 31 2020 05:23:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.46987 * 2 1 4 4 C 1.53003 * 109.47010 * 120.00034 * 2 1 3 5 5 C 1.50696 * 109.46967 * 184.06124 * 4 2 1 6 6 H 1.08000 * 120.00113 * 5.01372 * 5 4 2 7 7 C 1.37875 * 120.00113 * 185.00740 * 5 4 2 8 8 N 1.31520 * 119.99830 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00278 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47049 * 90.00563 * 9 7 5 11 11 H 1.48505 * 109.46963 * 210.00273 * 9 7 5 12 12 H 1.48499 * 109.47009 * 330.00247 * 9 7 5 13 13 N 1.46907 * 109.47270 * 239.99857 * 2 1 3 14 14 C 1.46901 * 111.00006 * 73.18681 * 13 2 1 15 15 C 1.46899 * 110.99961 * 309.23665 * 13 2 1 16 16 C 1.50697 * 109.47092 * 190.00070 * 15 13 2 17 17 O 1.21277 * 120.00207 * 359.97438 * 16 15 13 18 18 N 1.34781 * 120.00096 * 180.02562 * 16 15 13 19 19 C 1.46496 * 120.00116 * 179.97438 * 18 16 15 20 20 H 1.09002 * 110.01213 * 34.29460 * 19 18 16 21 21 C 1.53876 * 110.02903 * 155.67570 * 19 18 16 22 22 C 1.54161 * 108.70612 * 166.47375 * 21 19 18 23 23 S 1.82919 * 105.08429 * 332.08709 * 22 21 19 24 24 O 1.42104 * 109.35182 * 115.52337 * 23 22 21 25 25 O 1.42101 * 109.35722 * 248.59553 * 23 22 21 26 26 C 1.55048 * 110.02454 * 272.91622 * 19 18 16 27 27 H 1.09006 * 109.47046 * 179.97438 * 1 2 3 28 28 H 1.08991 * 109.47307 * 299.99933 * 1 2 3 29 29 H 1.09000 * 109.47196 * 60.00497 * 1 2 3 30 30 H 1.08993 * 109.47054 * 304.06536 * 4 2 1 31 31 H 1.08997 * 109.46857 * 64.06394 * 4 2 1 32 32 H 0.97004 * 120.00005 * 179.97438 * 8 7 5 33 33 H 1.09007 * 109.46857 * 53.73824 * 14 13 2 34 34 H 1.08997 * 109.47300 * 173.73466 * 14 13 2 35 35 H 1.09001 * 109.47239 * 293.74176 * 14 13 2 36 36 H 1.09000 * 109.47349 * 309.99880 * 15 13 2 37 37 H 1.09004 * 109.47127 * 69.99858 * 15 13 2 38 38 H 0.97004 * 119.99919 * 359.97438 * 18 16 15 39 39 H 1.09010 * 109.64416 * 286.32399 * 21 19 18 40 40 H 1.09002 * 109.64779 * 46.75092 * 21 19 18 41 41 H 1.09001 * 110.32459 * 90.99007 * 22 21 19 42 42 H 1.09000 * 110.32063 * 213.09185 * 22 21 19 43 43 H 1.09002 * 110.79028 * 316.54170 * 26 19 18 44 44 H 1.08998 * 110.79368 * 80.01023 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5436 -0.6347 1.3006 6 1 4.0762 -0.0493 0.5658 7 6 4.2393 -1.3028 2.2858 8 7 3.5908 -2.0161 3.1804 9 14 6.1031 -1.1950 2.3499 10 1 6.5034 -0.0419 3.1957 11 1 6.6518 -2.4476 2.9288 12 1 6.6358 -1.0098 0.9761 13 7 2.0197 -0.6926 -1.1995 14 6 1.8212 0.1301 -2.4003 15 6 1.3774 -2.0052 -1.3486 16 6 2.0724 -2.7840 -2.4355 17 8 3.0101 -2.2936 -3.0280 18 7 1.6512 -4.0251 -2.7500 19 6 2.3264 -4.7819 -3.8070 20 1 3.3913 -4.5492 -3.8103 21 6 2.1174 -6.2909 -3.5905 22 6 2.5334 -7.0369 -4.8739 23 16 2.2562 -5.8414 -6.2304 24 8 3.5013 -5.5161 -6.8331 25 8 1.1744 -6.2867 -7.0369 26 6 1.7039 -4.4400 -5.1853 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.6184 -0.2513 2.1377 31 1 1.7373 -1.7678 1.2135 32 1 4.0803 -2.4864 3.8733 33 1 2.2714 1.1109 -2.2472 34 1 2.2911 -0.3559 -3.2553 35 1 0.7539 0.2457 -2.5891 36 1 1.4466 -2.5525 -0.4085 37 1 0.3288 -1.8686 -1.6131 38 1 0.9009 -4.4172 -2.2764 39 1 2.7300 -6.6296 -2.7549 40 1 1.0666 -6.4886 -3.3783 41 1 3.5858 -7.3165 -4.8250 42 1 1.9133 -7.9221 -5.0151 43 1 0.6162 -4.4103 -5.1219 44 1 2.0965 -3.4962 -5.5637 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001771755652.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:35 Heat of formation + Delta-G solvation = -94.529677 kcal Electronic energy + Delta-G solvation = -25518.315807 eV Core-core repulsion = 21791.481918 eV Total energy + Delta-G solvation = -3726.833889 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.95493 -37.83686 -37.34074 -36.59005 -36.26978 -33.15246 -32.88446 -30.82685 -29.97865 -27.98457 -27.30277 -25.43507 -24.28184 -22.65528 -21.72234 -20.68469 -19.18328 -18.82053 -17.49749 -17.25871 -16.72033 -16.20198 -16.06695 -15.52726 -15.34637 -14.84357 -14.70550 -14.55265 -14.21289 -13.97548 -13.76232 -13.22266 -13.00982 -12.81738 -12.64613 -12.46832 -12.39816 -12.28028 -12.15567 -11.89144 -11.64589 -11.51518 -11.42926 -11.20410 -11.03277 -10.88224 -10.75074 -10.59527 -10.45169 -10.07744 -9.57114 -9.23999 -9.16604 -9.00592 -8.27809 -7.51942 -5.91114 -3.88046 -0.33187 2.13952 2.79804 3.00101 3.26579 3.39334 3.45390 3.53612 3.66142 4.03635 4.10578 4.22314 4.38972 4.55508 4.55842 4.60238 4.97508 5.10627 5.11926 5.27576 5.45983 5.47347 5.48041 5.55030 5.61142 5.75934 5.78456 5.88191 5.98997 6.03578 6.25552 6.43365 6.50472 6.55267 6.89866 7.31603 7.50829 7.58280 7.81059 7.94658 8.10004 8.39836 8.54965 9.17522 9.74081 11.20692 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.015691 B = 0.003311 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.001034 B = 8455.227462 C = 9331.024926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.085 3.915 3 H 0.074 0.926 4 C 0.030 3.970 5 C -0.488 4.488 6 H 0.060 0.940 7 C 0.051 3.949 8 N -0.906 5.906 9 Si 0.888 3.112 10 H -0.283 1.283 11 H -0.290 1.290 12 H -0.273 1.273 13 N -0.495 5.495 14 C 0.019 3.981 15 C 0.039 3.961 16 C 0.520 3.480 17 O -0.512 6.512 18 N -0.727 5.727 19 C 0.150 3.850 20 H 0.114 0.886 21 C -0.124 4.124 22 C -0.590 4.590 23 S 2.392 3.608 24 O -0.932 6.932 25 O -0.940 6.940 26 C -0.604 4.604 27 H 0.051 0.949 28 H 0.058 0.942 29 H 0.041 0.959 30 H 0.017 0.983 31 H 0.020 0.980 32 H 0.257 0.743 33 H 0.062 0.938 34 H 0.077 0.923 35 H 0.009 0.991 36 H 0.116 0.884 37 H 0.054 0.946 38 H 0.403 0.597 39 H 0.103 0.897 40 H 0.091 0.909 41 H 0.141 0.859 42 H 0.142 0.858 43 H 0.140 0.860 44 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.009 -9.286 -14.201 19.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.023 4.023 3 H 0.092 0.908 4 C -0.007 4.007 5 C -0.526 4.526 6 H 0.078 0.922 7 C -0.148 4.148 8 N -0.547 5.547 9 Si 0.716 3.284 10 H -0.210 1.210 11 H -0.216 1.216 12 H -0.198 1.198 13 N -0.218 5.218 14 C -0.130 4.130 15 C -0.092 4.092 16 C 0.307 3.693 17 O -0.385 6.385 18 N -0.381 5.381 19 C 0.043 3.957 20 H 0.132 0.868 21 C -0.163 4.163 22 C -0.719 4.719 23 S 2.575 3.425 24 O -0.929 6.929 25 O -0.937 6.937 26 C -0.735 4.735 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.060 0.940 30 H 0.035 0.965 31 H 0.038 0.962 32 H 0.066 0.934 33 H 0.081 0.919 34 H 0.096 0.904 35 H 0.028 0.972 36 H 0.134 0.866 37 H 0.072 0.928 38 H 0.237 0.763 39 H 0.122 0.878 40 H 0.110 0.890 41 H 0.159 0.841 42 H 0.160 0.840 43 H 0.158 0.842 44 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -7.640 -9.156 -15.413 19.487 hybrid contribution -0.346 -0.068 1.158 1.211 sum -7.986 -9.223 -14.255 18.763 Atomic orbital electron populations 1.22548 0.99630 1.01212 1.00984 1.22026 0.90061 0.98519 0.91664 0.90776 1.19200 0.96512 0.95215 0.89738 1.21161 0.91568 1.28776 1.11099 0.92165 1.24969 0.98051 0.95790 0.95960 1.69959 1.35182 1.32977 1.16608 0.86650 0.86426 0.77102 0.78205 1.20980 1.21597 1.19767 1.61754 1.56831 1.00824 1.02431 1.22555 0.97667 0.98303 0.94444 1.21988 0.95198 0.93492 0.98538 1.21002 0.83833 0.80830 0.83676 1.90662 1.27374 1.68277 1.52159 1.45870 1.36644 1.16990 1.38645 1.21443 0.99350 0.90204 0.84752 0.86814 1.22158 1.04551 0.91979 0.97593 1.30456 1.12068 1.15042 1.14377 1.08963 0.75856 0.79597 0.78110 1.93648 1.42637 1.82734 1.73885 1.93617 1.54947 1.80000 1.65090 1.31165 1.11779 1.19127 1.11406 0.92984 0.92273 0.94042 0.96473 0.96228 0.93380 0.91906 0.90426 0.97222 0.86596 0.92786 0.76258 0.87835 0.89035 0.84101 0.84022 0.84199 0.83819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.88 8.40 37.16 0.31 -2.56 16 2 C 0.08 1.65 2.25 -67.71 -0.15 1.50 16 3 H 0.07 1.49 7.92 -51.93 -0.41 1.07 16 4 C 0.03 0.73 4.42 -27.88 -0.12 0.61 16 5 C -0.49 -13.50 8.81 -34.44 -0.30 -13.80 16 6 H 0.06 1.71 7.75 -52.49 -0.41 1.30 16 7 C 0.05 1.46 5.46 -17.82 -0.10 1.36 16 8 N -0.91 -26.63 13.29 55.43 0.74 -25.89 16 9 Si 0.89 22.15 29.54 -169.99 -5.02 17.13 16 10 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 12 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 13 N -0.50 -9.32 4.12 -236.32 -0.97 -10.30 16 14 C 0.02 0.31 8.91 60.07 0.54 0.84 16 15 C 0.04 0.61 4.29 -4.98 -0.02 0.59 16 16 C 0.52 7.84 7.57 -10.98 -0.08 7.76 16 17 O -0.51 -9.64 13.97 5.56 0.08 -9.56 16 18 N -0.73 -7.38 5.13 -52.32 -0.27 -7.65 16 19 C 0.15 1.30 2.90 -66.39 -0.19 1.11 16 20 H 0.11 1.19 7.59 -51.93 -0.39 0.80 16 21 C -0.12 -0.66 5.92 -25.67 -0.15 -0.81 16 22 C -0.59 -2.81 7.26 37.76 0.27 -2.53 16 23 S 2.39 18.74 6.10 -107.50 -0.66 18.08 16 24 O -0.93 -11.26 18.14 -57.73 -1.05 -12.31 16 25 O -0.94 -10.26 18.15 -57.73 -1.05 -11.30 16 26 C -0.60 -4.59 6.96 38.24 0.27 -4.32 16 27 H 0.05 0.76 6.53 -51.93 -0.34 0.42 16 28 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.04 0.58 6.95 -51.93 -0.36 0.21 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.02 0.49 6.34 -51.93 -0.33 0.16 16 32 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 33 H 0.06 1.02 7.97 -51.92 -0.41 0.60 16 34 H 0.08 1.33 5.92 -51.93 -0.31 1.02 16 35 H 0.01 0.14 6.99 -51.93 -0.36 -0.23 16 36 H 0.12 1.97 6.19 -51.93 -0.32 1.65 16 37 H 0.05 0.70 6.81 -51.93 -0.35 0.35 16 38 H 0.40 2.82 8.60 -40.82 -0.35 2.47 16 39 H 0.10 0.55 8.14 -51.92 -0.42 0.12 16 40 H 0.09 0.30 8.11 -51.93 -0.42 -0.12 16 41 H 0.14 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.14 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.14 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.14 1.26 8.14 -51.93 -0.42 0.83 16 LS Contribution 361.88 15.07 5.45 5.45 Total: -1.00 -38.49 361.88 -9.35 -47.84 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -6.87 Total: -1.24 kcal Atomic # 6 Polarization: -10.53 SS G_CDS: 0.26 Total: -10.26 kcal Atomic # 7 Polarization: -43.33 SS G_CDS: -0.50 Total: -43.84 kcal Atomic # 8 Polarization: -31.15 SS G_CDS: -2.02 Total: -33.17 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Atomic # 16 Polarization: 18.74 SS G_CDS: -0.66 Total: 18.08 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -38.49 -9.35 -47.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771755652.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.687 kcal (2) G-P(sol) polarization free energy of solvation -38.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds