Wall clock time and date at job start Tue Mar 31 2020 05:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.46979 * 2 1 4 4 C 1.53001 * 109.46673 * 119.99711 * 2 1 3 5 5 C 1.50703 * 109.47265 * 295.18590 * 4 2 1 6 6 H 1.07995 * 119.99848 * 355.94850 * 5 4 2 7 7 C 1.37878 * 120.00025 * 175.95271 * 5 4 2 8 8 N 1.31518 * 119.99846 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 119.99941 * 179.72633 * 7 5 4 10 10 H 1.48507 * 109.47466 * 59.99513 * 9 7 5 11 11 H 1.48502 * 109.47316 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.46928 * 299.99742 * 9 7 5 13 13 N 1.46896 * 109.47225 * 239.99817 * 2 1 3 14 14 C 1.46898 * 111.00142 * 186.49932 * 13 2 1 15 15 C 1.46892 * 111.00341 * 62.53664 * 13 2 1 16 16 C 1.50695 * 109.47609 * 190.00014 * 15 13 2 17 17 O 1.21281 * 119.99752 * 0.02562 * 16 15 13 18 18 N 1.34772 * 120.00444 * 180.02562 * 16 15 13 19 19 C 1.46506 * 120.00487 * 180.02562 * 18 16 15 20 20 H 1.09004 * 109.63624 * 325.70120 * 19 18 16 21 21 C 1.53872 * 109.64893 * 205.27649 * 19 18 16 22 22 C 1.55040 * 106.62288 * 192.96705 * 21 19 18 23 23 S 1.83285 * 102.56998 * 42.42864 * 22 21 19 24 24 O 1.42107 * 109.35157 * 90.18802 * 23 22 21 25 25 O 1.42104 * 109.35457 * 223.38897 * 23 22 21 26 26 C 1.54160 * 109.64579 * 86.12987 * 19 18 16 27 27 H 1.09004 * 109.47084 * 60.00300 * 1 2 3 28 28 H 1.08994 * 109.47498 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47068 * 300.00713 * 1 2 3 30 30 H 1.09003 * 109.47019 * 175.18827 * 4 2 1 31 31 H 1.08999 * 109.47417 * 55.18763 * 4 2 1 32 32 H 0.96996 * 119.99444 * 180.02562 * 8 7 5 33 33 H 1.08998 * 109.47422 * 67.35942 * 14 13 2 34 34 H 1.09004 * 109.47332 * 187.36732 * 14 13 2 35 35 H 1.09002 * 109.46704 * 307.36222 * 14 13 2 36 36 H 1.09000 * 109.47315 * 310.00492 * 15 13 2 37 37 H 1.09007 * 109.47097 * 70.00127 * 15 13 2 38 38 H 0.97000 * 120.00079 * 0.02562 * 18 16 15 39 39 H 1.09003 * 110.02389 * 312.25770 * 21 19 18 40 40 H 1.09003 * 110.03033 * 73.66766 * 21 19 18 41 41 H 1.09005 * 110.79119 * 160.70047 * 22 21 19 42 42 H 1.09005 * 110.78910 * 284.16089 * 22 21 19 43 43 H 1.09001 * 110.31845 * 266.66294 * 26 19 18 44 44 H 1.09000 * 110.32051 * 28.85763 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6372 0.0548 2.4769 6 1 1.1314 1.0034 2.3742 7 6 1.9147 -0.4464 3.7310 8 7 2.5303 -1.6019 3.8560 9 14 1.4224 0.5191 5.2525 10 1 -0.0500 0.7127 5.2611 11 1 1.8297 -0.2308 6.4678 12 1 2.0956 1.8427 5.2380 13 7 2.0197 -0.6925 -1.1994 14 6 3.4798 -0.8480 -1.1582 15 6 1.5989 0.0076 -2.4202 16 6 1.9021 -0.8505 -3.6213 17 8 2.4175 -1.9385 -3.4747 18 7 1.6005 -0.4090 -4.8585 19 6 1.8947 -1.2435 -6.0261 20 1 2.8095 -1.8096 -5.8506 21 6 2.0682 -0.3523 -7.2685 22 6 2.0425 -1.2960 -8.4983 23 16 0.6763 -2.4473 -8.0892 24 8 -0.5452 -1.9278 -8.5968 25 8 1.0690 -3.7757 -8.4061 26 6 0.7242 -2.2147 -6.2773 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5140 0.8900 30 1 3.1265 -0.7965 1.2073 31 1 1.6079 -1.7209 1.2935 32 1 2.7251 -1.9545 4.7383 33 1 3.7495 -1.5368 -0.3576 34 1 3.8301 -1.2439 -2.1116 35 1 3.9434 0.1214 -0.9751 36 1 0.5278 0.2045 -2.3754 37 1 2.1386 0.9512 -2.5023 38 1 1.1887 0.4614 -4.9758 39 1 1.2495 0.3646 -7.3308 40 1 3.0221 0.1731 -7.2208 41 1 1.8198 -0.7393 -9.4086 42 1 2.9860 -1.8335 -8.5933 43 1 0.9091 -3.1669 -5.7801 44 1 -0.2112 -1.7789 -5.9263 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001771755656.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:37 Heat of formation + Delta-G solvation = -95.878709 kcal Electronic energy + Delta-G solvation = -24900.459760 eV Core-core repulsion = 21173.567373 eV Total energy + Delta-G solvation = -3726.892387 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.16166 -37.82794 -37.44068 -36.66906 -36.36825 -33.34676 -33.11376 -31.02044 -30.09130 -28.47416 -26.80660 -25.44074 -24.11381 -23.03952 -21.76743 -20.60450 -19.24935 -19.05999 -17.56994 -17.38901 -16.85756 -16.60506 -16.16941 -15.82171 -15.52174 -14.76855 -14.62589 -14.52492 -14.30898 -14.14911 -14.08541 -13.27351 -13.15095 -12.79579 -12.71285 -12.62073 -12.55394 -12.41674 -12.14390 -11.78346 -11.72367 -11.62235 -11.35141 -11.26595 -10.90861 -10.88385 -10.82588 -10.77833 -10.39411 -9.95061 -9.71470 -9.43876 -9.23306 -9.10851 -8.34077 -7.74919 -5.99971 -4.02251 -0.43015 2.03347 2.57857 2.76829 3.14900 3.31746 3.36981 3.38305 3.58941 3.80395 3.96832 4.08545 4.29234 4.37518 4.43336 4.54631 4.75306 4.90354 5.02217 5.09489 5.31287 5.32622 5.35396 5.38869 5.42919 5.80865 5.88906 6.04758 6.09994 6.21568 6.25495 6.59999 6.65281 6.85653 7.06931 7.17440 7.50590 7.55827 7.74530 7.85299 8.06450 8.15830 8.41866 9.03863 9.60714 11.11332 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.036621 B = 0.002216 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.407535 B =12634.925429 C =12674.657289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.086 3.914 3 H 0.028 0.972 4 C 0.031 3.969 5 C -0.519 4.519 6 H 0.054 0.946 7 C 0.058 3.942 8 N -0.892 5.892 9 Si 0.891 3.109 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.278 1.278 13 N -0.521 5.521 14 C 0.026 3.974 15 C 0.031 3.969 16 C 0.516 3.484 17 O -0.508 6.508 18 N -0.731 5.731 19 C 0.156 3.844 20 H 0.111 0.889 21 C -0.129 4.129 22 C -0.587 4.587 23 S 2.394 3.606 24 O -0.936 6.936 25 O -0.935 6.935 26 C -0.611 4.611 27 H 0.029 0.971 28 H 0.056 0.944 29 H 0.068 0.932 30 H 0.018 0.982 31 H 0.028 0.972 32 H 0.261 0.739 33 H 0.079 0.921 34 H 0.067 0.933 35 H 0.015 0.985 36 H 0.106 0.894 37 H 0.057 0.943 38 H 0.402 0.598 39 H 0.094 0.906 40 H 0.105 0.895 41 H 0.142 0.858 42 H 0.141 0.859 43 H 0.147 0.853 44 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.144 5.244 -25.667 26.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.021 4.021 3 H 0.046 0.954 4 C -0.007 4.007 5 C -0.558 4.558 6 H 0.072 0.928 7 C -0.143 4.143 8 N -0.531 5.531 9 Si 0.719 3.281 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.204 1.204 13 N -0.246 5.246 14 C -0.122 4.122 15 C -0.100 4.100 16 C 0.303 3.697 17 O -0.381 6.381 18 N -0.386 5.386 19 C 0.049 3.951 20 H 0.129 0.871 21 C -0.168 4.168 22 C -0.717 4.717 23 S 2.576 3.424 24 O -0.933 6.933 25 O -0.932 6.932 26 C -0.741 4.741 27 H 0.048 0.952 28 H 0.075 0.925 29 H 0.087 0.913 30 H 0.036 0.964 31 H 0.047 0.953 32 H 0.071 0.929 33 H 0.098 0.902 34 H 0.086 0.914 35 H 0.034 0.966 36 H 0.124 0.876 37 H 0.075 0.925 38 H 0.237 0.763 39 H 0.112 0.888 40 H 0.124 0.876 41 H 0.160 0.840 42 H 0.160 0.840 43 H 0.165 0.835 44 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -1.472 3.259 -25.958 26.204 hybrid contribution 0.363 2.213 1.379 2.633 sum -1.109 5.473 -24.579 25.205 Atomic orbital electron populations 1.21786 0.95318 1.01799 0.99967 1.21924 0.95023 0.95220 0.89923 0.95387 1.19198 0.96339 0.96252 0.88890 1.21127 1.38222 1.05578 0.90838 0.92763 1.24992 0.95302 0.94994 0.99043 1.69963 1.41244 1.18438 1.23470 0.86677 0.78930 0.79973 0.82489 1.20258 1.21317 1.20356 1.61841 1.12663 1.49850 1.00262 1.22466 0.86784 0.99867 1.03091 1.22033 1.03152 0.94812 0.90047 1.20975 0.77407 0.87553 0.83794 1.90700 1.40804 1.21292 1.85328 1.46020 1.65685 1.21640 1.05261 1.21193 0.96983 0.90849 0.86065 0.87117 1.22462 1.06467 0.98044 0.89819 1.30599 1.19874 1.14838 1.06360 1.08951 0.77529 0.76692 0.79229 1.93634 1.41223 1.80971 1.77436 1.93637 1.83533 1.33774 1.82245 1.31073 1.07988 1.10351 1.24732 0.95194 0.92488 0.91278 0.96383 0.95324 0.92924 0.90189 0.91392 0.96616 0.87632 0.92522 0.76273 0.88769 0.87600 0.84017 0.84026 0.83495 0.83886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.39 8.87 37.16 0.33 -2.06 16 2 C 0.09 1.73 2.07 -67.71 -0.14 1.59 16 3 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 4 C 0.03 0.78 4.17 -27.88 -0.12 0.66 16 5 C -0.52 -14.22 8.33 -34.44 -0.29 -14.51 16 6 H 0.05 1.43 7.20 -52.49 -0.38 1.05 16 7 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 8 N -0.89 -26.65 13.29 55.43 0.74 -25.92 16 9 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 13 N -0.52 -9.41 4.37 -236.34 -1.03 -10.44 16 14 C 0.03 0.47 8.46 60.06 0.51 0.97 16 15 C 0.03 0.41 5.29 -4.98 -0.03 0.38 16 16 C 0.52 6.38 7.43 -10.99 -0.08 6.30 16 17 O -0.51 -8.38 14.07 5.56 0.08 -8.30 16 18 N -0.73 -5.47 5.05 -52.77 -0.27 -5.74 16 19 C 0.16 0.98 2.89 -66.87 -0.19 0.79 16 20 H 0.11 0.81 7.56 -51.93 -0.39 0.42 16 21 C -0.13 -0.39 5.98 -25.20 -0.15 -0.54 16 22 C -0.59 -1.77 7.31 38.24 0.28 -1.49 16 23 S 2.39 15.63 6.10 -107.50 -0.66 14.98 16 24 O -0.94 -9.25 18.14 -57.71 -1.05 -10.30 16 25 O -0.93 -9.99 18.15 -57.71 -1.05 -11.03 16 26 C -0.61 -4.01 6.90 37.76 0.26 -3.75 16 27 H 0.03 0.43 6.26 -51.93 -0.33 0.11 16 28 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 29 H 0.07 1.33 7.02 -51.93 -0.36 0.96 16 30 H 0.02 0.49 6.21 -51.93 -0.32 0.16 16 31 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 33 H 0.08 1.63 6.57 -51.93 -0.34 1.29 16 34 H 0.07 1.16 5.79 -51.93 -0.30 0.86 16 35 H 0.02 0.27 8.11 -51.93 -0.42 -0.16 16 36 H 0.11 1.22 5.93 -51.93 -0.31 0.92 16 37 H 0.06 0.64 8.12 -51.93 -0.42 0.22 16 38 H 0.40 1.73 8.60 -40.82 -0.35 1.38 16 39 H 0.09 0.15 8.12 -51.93 -0.42 -0.28 16 40 H 0.11 0.23 8.14 -51.93 -0.42 -0.19 16 41 H 0.14 0.21 8.14 -51.93 -0.42 -0.21 16 42 H 0.14 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.15 1.13 8.14 -51.93 -0.42 0.70 16 44 H 0.14 0.85 8.07 -51.93 -0.42 0.43 16 LS Contribution 362.02 15.07 5.46 5.46 Total: -1.00 -38.62 362.02 -9.38 -48.00 By element: Atomic # 1 Polarization: 3.94 SS G_CDS: -6.86 Total: -2.92 kcal Atomic # 6 Polarization: -10.39 SS G_CDS: 0.28 Total: -10.10 kcal Atomic # 7 Polarization: -41.53 SS G_CDS: -0.56 Total: -42.09 kcal Atomic # 8 Polarization: -27.62 SS G_CDS: -2.02 Total: -29.63 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: 15.63 SS G_CDS: -0.66 Total: 14.98 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -38.62 -9.38 -48.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771755656.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.882 kcal (2) G-P(sol) polarization free energy of solvation -38.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds