Wall clock time and date at job start Tue Mar 31 2020 05:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46506 * 120.00047 * 2 1 4 4 C 1.50700 * 109.47285 * 275.00128 * 3 2 1 5 5 H 1.08005 * 119.99312 * 359.97438 * 4 3 2 6 6 C 1.37872 * 120.00013 * 179.97438 * 4 3 2 7 7 N 1.31503 * 120.00150 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99812 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47192 * 90.00127 * 8 6 4 10 10 H 1.48496 * 109.47104 * 210.00162 * 8 6 4 11 11 H 1.48505 * 109.47034 * 330.00211 * 8 6 4 12 12 S 1.65600 * 120.00464 * 179.97438 * 2 1 3 13 13 O 1.42103 * 106.40143 * 336.46402 * 12 2 1 14 14 O 1.42095 * 106.40698 * 203.54171 * 12 2 1 15 15 N 1.65598 * 107.21810 * 90.00065 * 12 2 1 16 16 C 1.47822 * 125.64822 * 269.96521 * 15 12 2 17 17 C 1.53906 * 104.06039 * 156.68553 * 16 15 12 18 18 H 1.08997 * 109.20579 * 282.69642 * 17 16 15 19 19 C 1.50734 * 113.01789 * 161.47187 * 17 16 15 20 20 C 1.52830 * 111.74449 * 294.86572 * 19 17 16 21 21 C 1.53337 * 108.04465 * 301.05497 * 20 19 17 22 22 H 1.09001 * 109.72223 * 304.45091 * 21 20 19 23 23 O 1.42900 * 109.63466 * 183.90702 * 21 20 19 24 24 C 1.52594 * 108.40421 * 64.20857 * 21 20 19 25 25 C 1.53000 * 111.01320 * 297.56794 * 24 21 20 26 26 H 1.09003 * 112.07734 * 286.01816 * 25 24 21 27 27 C 1.47170 * 125.65228 * 90.00104 * 15 12 2 28 28 H 1.09002 * 109.47300 * 270.00116 * 1 2 3 29 29 H 1.08999 * 109.47120 * 30.00302 * 1 2 3 30 30 H 1.09004 * 109.46924 * 149.99767 * 1 2 3 31 31 H 1.09006 * 109.46667 * 34.99947 * 3 2 1 32 32 H 1.09002 * 109.47108 * 154.99715 * 3 2 1 33 33 H 0.97006 * 120.00446 * 180.02562 * 7 6 4 34 34 H 1.09003 * 110.50888 * 275.32838 * 16 15 12 35 35 H 1.08992 * 110.51366 * 38.03677 * 16 15 12 36 36 H 1.09000 * 109.02861 * 55.45018 * 19 17 16 37 37 H 1.09006 * 109.02350 * 174.28631 * 19 17 16 38 38 H 1.08998 * 109.73738 * 60.72667 * 20 19 17 39 39 H 1.08998 * 109.73515 * 181.43405 * 20 19 17 40 40 H 0.96705 * 114.00202 * 61.08854 * 23 21 20 41 41 H 1.09002 * 109.16347 * 177.18748 * 24 21 20 42 42 H 1.09003 * 109.16341 * 57.94796 * 24 21 20 43 43 H 1.09003 * 109.95987 * 59.62876 * 27 15 12 44 44 H 1.09005 * 109.99329 * 298.40915 * 27 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3414 1.7658 -1.4154 5 1 1.9288 1.1935 -2.2332 6 6 2.9997 2.9509 -1.6663 7 7 3.5015 3.6479 -0.6705 8 14 3.1787 3.5666 -3.4208 9 1 2.0178 4.4265 -3.7645 10 1 4.4316 4.3540 -3.5437 11 1 3.2288 2.4085 -4.3491 12 16 2.2930 -1.4341 0.0006 13 8 1.4114 -2.4063 0.5454 14 8 3.5759 -1.1565 0.5450 15 7 2.5382 -1.8593 -1.5809 16 6 1.6258 -2.6818 -2.4033 17 6 1.9692 -2.2874 -3.8508 18 1 1.5165 -1.3219 -4.0763 19 6 1.4928 -3.2955 -4.8651 20 6 2.2106 -4.6360 -4.7113 21 6 3.7146 -4.3919 -4.8835 22 1 3.9008 -3.9026 -5.8396 23 8 4.4118 -5.6384 -4.8364 24 6 4.1904 -3.4938 -3.7454 25 6 3.5001 -2.1293 -3.7979 26 1 3.8867 -1.5054 -4.6038 27 6 3.7008 -1.4815 -2.4004 28 1 -0.3634 0.0000 1.0277 29 1 -0.3633 0.8899 -0.5139 30 1 -0.3633 -0.8900 -0.5139 31 1 1.6500 2.0043 0.5895 32 1 3.1857 1.1177 0.4344 33 1 3.9644 4.4820 -0.8469 34 1 1.8170 -3.7425 -2.2408 35 1 0.5870 -2.4411 -2.1780 36 1 0.4214 -3.4494 -4.7371 37 1 1.6774 -2.9064 -5.8665 38 1 2.0147 -5.0470 -3.7210 39 1 1.8606 -5.3306 -5.4748 40 1 4.1572 -6.2581 -5.5337 41 1 5.2682 -3.3529 -3.8273 42 1 3.9638 -3.9729 -2.7929 43 1 4.6161 -1.8580 -1.9437 44 1 3.7522 -0.3970 -2.4969 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000425206318.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:41 Heat of formation + Delta-G solvation = -133.519455 kcal Electronic energy + Delta-G solvation = -27042.652912 eV Core-core repulsion = 23314.128300 eV Total energy + Delta-G solvation = -3728.524612 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.20463 -37.06524 -36.63286 -35.46810 -35.19090 -34.05553 -32.50376 -31.53762 -29.44472 -27.82870 -27.08548 -25.08683 -23.80139 -22.31377 -22.05283 -21.36058 -18.91215 -18.43448 -17.31665 -17.23143 -16.89359 -16.35484 -15.96218 -15.43878 -14.81924 -14.75957 -14.41603 -13.99534 -13.67388 -13.50354 -13.23835 -13.07656 -12.97936 -12.67042 -12.33054 -12.21024 -12.10953 -11.79481 -11.67040 -11.58173 -11.49899 -11.37666 -11.19064 -11.13175 -10.90719 -10.77176 -10.62805 -10.54362 -10.36387 -10.22710 -10.10202 -9.82030 -9.78061 -8.58703 -8.51075 -8.03683 -6.13149 -4.19902 1.24962 3.21633 3.28708 3.30232 3.51243 3.96887 4.16116 4.33392 4.37846 4.52243 4.78632 4.84115 4.92300 5.05261 5.10093 5.20688 5.26440 5.35509 5.40907 5.48471 5.56909 5.63807 5.69178 5.77362 5.84750 5.94377 5.99834 6.04819 6.07959 6.20492 6.23638 6.24472 6.33718 6.40988 6.52167 6.60072 6.78580 7.33046 7.42886 7.49088 7.63462 7.83804 8.13607 8.84964 9.45789 10.94915 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.012963 B = 0.005630 C = 0.004552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2159.529291 B = 4972.174489 C = 6149.721016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.997 5.997 3 C 0.243 3.757 4 C -0.538 4.538 5 H 0.063 0.937 6 C 0.064 3.936 7 N -0.889 5.889 8 Si 0.893 3.107 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.272 1.272 12 S 2.800 3.200 13 O -0.997 6.997 14 O -0.974 6.974 15 N -1.015 6.015 16 C 0.133 3.867 17 C -0.097 4.097 18 H 0.085 0.915 19 C -0.103 4.103 20 C -0.152 4.152 21 C 0.105 3.895 22 H 0.056 0.944 23 O -0.569 6.569 24 C -0.110 4.110 25 C -0.085 4.085 26 H 0.096 0.904 27 C 0.122 3.878 28 H 0.044 0.956 29 H 0.073 0.927 30 H 0.050 0.950 31 H 0.037 0.963 32 H 0.051 0.949 33 H 0.265 0.735 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.074 0.926 39 H 0.064 0.936 40 H 0.374 0.626 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.067 0.933 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.912 -13.637 -10.170 17.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.839 5.839 3 C 0.121 3.879 4 C -0.578 4.578 5 H 0.081 0.919 6 C -0.139 4.139 7 N -0.527 5.527 8 Si 0.721 3.279 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.197 1.197 12 S 2.810 3.190 13 O -0.981 6.981 14 O -0.958 6.958 15 N -0.854 5.854 16 C 0.007 3.993 17 C -0.117 4.117 18 H 0.104 0.896 19 C -0.142 4.142 20 C -0.190 4.190 21 C 0.046 3.954 22 H 0.073 0.927 23 O -0.374 6.374 24 C -0.147 4.147 25 C -0.105 4.105 26 H 0.114 0.886 27 C -0.003 4.003 28 H 0.062 0.938 29 H 0.091 0.909 30 H 0.069 0.931 31 H 0.055 0.945 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.093 0.907 39 H 0.082 0.918 40 H 0.221 0.779 41 H 0.089 0.911 42 H 0.092 0.908 43 H 0.086 0.914 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.252 -13.613 -8.696 16.477 hybrid contribution -0.376 0.592 -1.814 1.945 sum -3.628 -13.020 -10.510 17.122 Atomic orbital electron populations 1.21206 0.80217 1.01930 1.00576 1.57711 1.14164 1.23570 1.88415 1.19226 0.92185 0.78893 0.97563 1.21540 1.36542 1.06759 0.92919 0.91874 1.24958 0.95231 0.96538 0.97158 1.69930 1.36756 1.15084 1.30926 0.86588 0.77610 0.78992 0.84744 1.20704 1.21124 1.19712 1.01322 0.73054 0.72551 0.72107 1.93533 1.67455 1.60527 1.76630 1.93570 1.40866 1.85237 1.76157 1.59160 1.30392 1.65208 1.30613 1.21792 0.93182 0.94770 0.89573 1.21510 0.95699 1.00087 0.94410 0.89618 1.20862 1.00129 0.94195 0.98965 1.22343 0.95996 0.97791 1.02864 1.21807 0.90383 0.84584 0.98604 0.92650 1.86533 1.66609 1.27539 1.56740 1.21558 1.00643 0.94066 0.98468 1.22151 0.94836 0.95730 0.97755 0.88587 1.22044 0.87695 1.01275 0.89286 0.93776 0.90854 0.93086 0.94480 0.93127 0.92567 0.91717 0.91247 0.91346 0.91535 0.90732 0.91778 0.77919 0.91091 0.90812 0.91431 0.89448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.87 10.31 59.84 0.62 2.48 16 2 N -1.00 -20.93 3.23 -123.05 -0.40 -21.33 16 3 C 0.24 6.06 5.41 -5.19 -0.03 6.03 16 4 C -0.54 -13.79 8.94 -34.44 -0.31 -14.10 16 5 H 0.06 1.55 7.81 -52.48 -0.41 1.14 16 6 C 0.06 1.71 5.46 -17.83 -0.10 1.61 16 7 N -0.89 -25.16 13.28 55.43 0.74 -24.42 16 8 Si 0.89 20.18 29.54 -169.99 -5.02 15.16 16 9 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 10 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 12 S 2.80 57.67 6.32 -107.50 -0.68 56.99 16 13 O -1.00 -21.06 16.80 -57.17 -0.96 -22.02 16 14 O -0.97 -23.28 16.27 -57.17 -0.93 -24.21 16 15 N -1.02 -17.48 3.77 -110.99 -0.42 -17.90 16 16 C 0.13 1.83 5.94 -2.84 -0.02 1.82 16 17 C -0.10 -1.15 2.81 -90.76 -0.26 -1.41 16 18 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 19 C -0.10 -0.93 5.37 -27.95 -0.15 -1.08 16 20 C -0.15 -1.33 5.45 -26.64 -0.15 -1.48 16 21 C 0.10 1.04 3.45 -26.76 -0.09 0.94 16 22 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 23 O -0.57 -5.85 13.33 -35.23 -0.47 -6.32 16 24 C -0.11 -1.31 4.28 -26.94 -0.12 -1.43 16 25 C -0.08 -1.07 3.61 -88.86 -0.32 -1.39 16 26 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 27 C 0.12 2.01 6.29 -2.44 -0.02 1.99 16 28 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.07 1.25 8.07 -51.93 -0.42 0.83 16 30 H 0.05 0.77 7.79 -51.93 -0.40 0.37 16 31 H 0.04 0.96 8.11 -51.93 -0.42 0.54 16 32 H 0.05 1.39 6.91 -51.93 -0.36 1.03 16 33 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 34 H 0.06 0.85 6.15 -51.93 -0.32 0.53 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.74 6.80 -51.93 -0.35 0.38 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.37 2.16 9.09 45.56 0.41 2.57 16 41 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.07 0.99 7.16 -51.93 -0.37 0.62 16 43 H 0.07 1.10 7.74 -51.93 -0.40 0.70 16 44 H 0.09 1.63 7.70 -51.93 -0.40 1.23 16 LS Contribution 356.10 15.07 5.37 5.37 Total: -1.00 -32.50 356.10 -10.08 -42.58 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -6.38 Total: 2.11 kcal Atomic # 6 Polarization: -5.07 SS G_CDS: -0.93 Total: -6.00 kcal Atomic # 7 Polarization: -63.57 SS G_CDS: -0.08 Total: -63.65 kcal Atomic # 8 Polarization: -50.19 SS G_CDS: -2.36 Total: -52.55 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Atomic # 16 Polarization: 57.67 SS G_CDS: -0.68 Total: 56.99 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.50 -10.08 -42.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425206318.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.938 kcal (2) G-P(sol) polarization free energy of solvation -32.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds