Wall clock time and date at job start Tue Mar 31 2020 05:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46506 * 120.00047 * 2 1 4 4 C 1.50700 * 109.47285 * 275.00128 * 3 2 1 5 5 H 1.08005 * 119.99312 * 359.97438 * 4 3 2 6 6 C 1.37872 * 120.00013 * 179.97438 * 4 3 2 7 7 N 1.31503 * 120.00150 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99812 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47192 * 90.00127 * 8 6 4 10 10 H 1.48496 * 109.47104 * 210.00162 * 8 6 4 11 11 H 1.48505 * 109.47034 * 330.00211 * 8 6 4 12 12 S 1.65600 * 120.00464 * 179.97438 * 2 1 3 13 13 O 1.42103 * 106.40143 * 336.46402 * 12 2 1 14 14 O 1.42095 * 106.40698 * 203.54171 * 12 2 1 15 15 N 1.65598 * 107.21810 * 90.00065 * 12 2 1 16 16 C 1.47822 * 125.64822 * 269.96521 * 15 12 2 17 17 C 1.53906 * 104.06039 * 156.68553 * 16 15 12 18 18 H 1.08997 * 109.20579 * 282.69642 * 17 16 15 19 19 C 1.50734 * 113.01789 * 161.47187 * 17 16 15 20 20 C 1.52830 * 111.74449 * 294.86572 * 19 17 16 21 21 C 1.53337 * 108.04465 * 301.05497 * 20 19 17 22 22 H 1.09001 * 109.72223 * 304.45091 * 21 20 19 23 23 O 1.42900 * 109.63466 * 183.90702 * 21 20 19 24 24 C 1.52594 * 108.40421 * 64.20857 * 21 20 19 25 25 C 1.53000 * 111.01320 * 297.56794 * 24 21 20 26 26 H 1.09003 * 112.07734 * 286.01816 * 25 24 21 27 27 C 1.47170 * 125.65228 * 90.00104 * 15 12 2 28 28 H 1.09002 * 109.47300 * 270.00116 * 1 2 3 29 29 H 1.08999 * 109.47120 * 30.00302 * 1 2 3 30 30 H 1.09004 * 109.46924 * 149.99767 * 1 2 3 31 31 H 1.09006 * 109.46667 * 34.99947 * 3 2 1 32 32 H 1.09002 * 109.47108 * 154.99715 * 3 2 1 33 33 H 0.97006 * 120.00446 * 180.02562 * 7 6 4 34 34 H 1.09003 * 110.50888 * 275.32838 * 16 15 12 35 35 H 1.08992 * 110.51366 * 38.03677 * 16 15 12 36 36 H 1.09000 * 109.02861 * 55.45018 * 19 17 16 37 37 H 1.09006 * 109.02350 * 174.28631 * 19 17 16 38 38 H 1.08998 * 109.73738 * 60.72667 * 20 19 17 39 39 H 1.08998 * 109.73515 * 181.43405 * 20 19 17 40 40 H 0.96705 * 114.00202 * 61.08854 * 23 21 20 41 41 H 1.09002 * 109.16347 * 177.18748 * 24 21 20 42 42 H 1.09003 * 109.16341 * 57.94796 * 24 21 20 43 43 H 1.09003 * 109.95987 * 59.62876 * 27 15 12 44 44 H 1.09005 * 109.99329 * 298.40915 * 27 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3414 1.7658 -1.4154 5 1 1.9288 1.1935 -2.2332 6 6 2.9997 2.9509 -1.6663 7 7 3.5015 3.6479 -0.6705 8 14 3.1787 3.5666 -3.4208 9 1 2.0178 4.4265 -3.7645 10 1 4.4316 4.3540 -3.5437 11 1 3.2288 2.4085 -4.3491 12 16 2.2930 -1.4341 0.0006 13 8 1.4114 -2.4063 0.5454 14 8 3.5759 -1.1565 0.5450 15 7 2.5382 -1.8593 -1.5809 16 6 1.6258 -2.6818 -2.4033 17 6 1.9692 -2.2874 -3.8508 18 1 1.5165 -1.3219 -4.0763 19 6 1.4928 -3.2955 -4.8651 20 6 2.2106 -4.6360 -4.7113 21 6 3.7146 -4.3919 -4.8835 22 1 3.9008 -3.9026 -5.8396 23 8 4.4118 -5.6384 -4.8364 24 6 4.1904 -3.4938 -3.7454 25 6 3.5001 -2.1293 -3.7979 26 1 3.8867 -1.5054 -4.6038 27 6 3.7008 -1.4815 -2.4004 28 1 -0.3634 0.0000 1.0277 29 1 -0.3633 0.8899 -0.5139 30 1 -0.3633 -0.8900 -0.5139 31 1 1.6500 2.0043 0.5895 32 1 3.1857 1.1177 0.4344 33 1 3.9644 4.4820 -0.8469 34 1 1.8170 -3.7425 -2.2408 35 1 0.5870 -2.4411 -2.1780 36 1 0.4214 -3.4494 -4.7371 37 1 1.6774 -2.9064 -5.8665 38 1 2.0147 -5.0470 -3.7210 39 1 1.8606 -5.3306 -5.4748 40 1 4.1572 -6.2581 -5.5337 41 1 5.2682 -3.3529 -3.8273 42 1 3.9638 -3.9729 -2.7929 43 1 4.6161 -1.8580 -1.9437 44 1 3.7522 -0.3970 -2.4969 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000425206318.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:41 Heat of formation + Delta-G solvation = -158.793332 kcal Electronic energy + Delta-G solvation = -27043.748870 eV Core-core repulsion = 23314.128300 eV Total energy + Delta-G solvation = -3729.620570 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.17887 -38.37915 -37.93912 -37.22992 -36.95341 -35.01711 -34.48360 -32.51274 -30.41740 -29.68873 -28.18003 -26.79645 -24.85500 -24.14985 -22.93392 -22.42547 -19.99233 -19.81949 -18.87871 -18.62592 -18.19814 -18.06914 -17.19194 -16.92619 -16.38248 -15.79336 -15.54888 -15.30092 -15.06239 -14.75257 -14.55247 -14.23822 -14.13476 -14.03399 -13.97043 -13.58828 -13.43941 -13.28679 -13.16951 -13.03394 -12.91551 -12.75114 -12.61673 -12.47294 -12.42805 -12.33550 -11.95746 -11.91610 -11.72114 -11.51562 -11.26929 -11.07194 -10.58298 -10.56978 -9.96707 -9.75365 -8.16256 -6.30590 -0.38944 1.44425 1.45101 1.55680 1.95180 2.43267 2.54112 3.12338 3.16238 3.28692 3.51250 3.66298 3.96545 4.00183 4.08393 4.16435 4.21425 4.39215 4.45528 4.51425 4.55620 4.61661 4.67739 4.73367 4.79528 4.82490 4.85135 5.01856 5.05649 5.09605 5.16682 5.22788 5.24202 5.30259 5.32427 5.37005 5.45536 5.51268 5.58372 5.74648 5.92667 6.09631 6.81249 6.99202 7.39640 8.92261 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.012963 B = 0.005630 C = 0.004552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2159.529291 B = 4972.174489 C = 6149.721016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -1.003 6.003 3 C 0.258 3.742 4 C -0.537 4.537 5 H 0.075 0.925 6 C 0.009 3.991 7 N -0.931 5.931 8 Si 0.960 3.040 9 H -0.275 1.275 10 H -0.290 1.290 11 H -0.252 1.252 12 S 2.811 3.189 13 O -1.003 7.003 14 O -1.016 7.016 15 N -1.014 6.014 16 C 0.121 3.879 17 C -0.089 4.089 18 H 0.082 0.918 19 C -0.098 4.098 20 C -0.148 4.148 21 C 0.108 3.892 22 H 0.073 0.927 23 O -0.589 6.589 24 C -0.110 4.110 25 C -0.073 4.073 26 H 0.112 0.888 27 C 0.116 3.884 28 H 0.055 0.945 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.019 0.981 32 H 0.014 0.986 33 H 0.265 0.735 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.060 0.940 39 H 0.090 0.910 40 H 0.394 0.606 41 H 0.064 0.936 42 H 0.052 0.948 43 H 0.057 0.943 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.359 -14.999 -13.544 20.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.844 5.844 3 C 0.134 3.866 4 C -0.576 4.576 5 H 0.093 0.907 6 C -0.190 4.190 7 N -0.571 5.571 8 Si 0.785 3.215 9 H -0.200 1.200 10 H -0.216 1.216 11 H -0.175 1.175 12 S 2.821 3.179 13 O -0.987 6.987 14 O -1.000 7.000 15 N -0.855 5.855 16 C -0.003 4.003 17 C -0.109 4.109 18 H 0.100 0.900 19 C -0.136 4.136 20 C -0.185 4.185 21 C 0.050 3.950 22 H 0.091 0.909 23 O -0.398 6.398 24 C -0.147 4.147 25 C -0.093 4.093 26 H 0.130 0.870 27 C -0.009 4.009 28 H 0.073 0.927 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.037 0.963 32 H 0.033 0.967 33 H 0.074 0.926 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.101 0.899 37 H 0.103 0.897 38 H 0.078 0.922 39 H 0.108 0.892 40 H 0.244 0.756 41 H 0.083 0.917 42 H 0.071 0.929 43 H 0.075 0.925 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.739 -15.016 -12.075 19.843 hybrid contribution 0.077 0.936 -0.701 1.172 sum -4.662 -14.080 -12.776 19.576 Atomic orbital electron populations 1.21458 0.77957 1.03361 1.01854 1.57619 1.15703 1.22118 1.88973 1.18788 0.90648 0.80046 0.97131 1.21782 1.35926 1.06667 0.93236 0.90723 1.25860 0.94871 0.96833 1.01423 1.70077 1.37961 1.15650 1.33415 0.85519 0.77316 0.78881 0.79823 1.20027 1.21565 1.17546 1.00743 0.72087 0.72293 0.72764 1.93513 1.67366 1.60371 1.77426 1.93511 1.42959 1.85756 1.77777 1.58882 1.31446 1.65295 1.29919 1.22148 0.92996 0.94692 0.90468 1.21516 0.94662 1.00989 0.93717 0.90002 1.20859 1.00832 0.93299 0.98630 1.22314 0.95022 0.98189 1.02994 1.21753 0.90961 0.84292 0.98025 0.90940 1.86483 1.67092 1.28114 1.58113 1.21500 1.00325 0.94166 0.98754 1.22135 0.95928 0.95866 0.95359 0.86962 1.22133 0.87136 1.00002 0.91665 0.92683 0.90526 0.90490 0.96256 0.96749 0.92621 0.90926 0.90223 0.89914 0.89684 0.92154 0.89154 0.75593 0.91718 0.92882 0.92463 0.92066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.35 10.31 127.77 1.32 4.67 16 2 N -1.00 -42.69 3.23 -543.21 -1.75 -44.44 16 3 C 0.26 13.30 5.41 85.63 0.46 13.76 16 4 C -0.54 -27.78 8.94 25.60 0.23 -27.55 16 5 H 0.07 3.61 7.81 -2.91 -0.02 3.59 16 6 C 0.01 0.50 5.46 84.66 0.46 0.96 16 7 N -0.93 -54.11 13.28 21.44 0.28 -53.83 16 8 Si 0.96 40.98 29.54 68.60 2.03 43.01 16 9 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 10 H -0.29 -12.49 7.11 99.48 0.71 -11.79 16 11 H -0.25 -9.83 7.11 99.48 0.71 -9.12 16 12 S 2.81 117.94 6.32 -56.49 -0.36 117.58 16 13 O -1.00 -42.09 16.80 -128.00 -2.15 -44.24 16 14 O -1.02 -50.94 16.27 -128.00 -2.08 -53.02 16 15 N -1.01 -34.83 3.77 -505.08 -1.90 -36.74 16 16 C 0.12 3.14 5.94 86.43 0.51 3.65 16 17 C -0.09 -1.85 2.81 -10.89 -0.03 -1.88 16 18 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 19 C -0.10 -1.35 5.37 29.80 0.16 -1.19 16 20 C -0.15 -2.02 5.45 30.65 0.17 -1.86 16 21 C 0.11 1.81 3.45 30.57 0.11 1.91 16 22 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 23 O -0.59 -10.60 13.33 -148.98 -1.99 -12.59 16 24 C -0.11 -2.48 4.28 30.46 0.13 -2.35 16 25 C -0.07 -1.71 3.61 -9.65 -0.03 -1.75 16 26 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 27 C 0.12 3.84 6.29 87.05 0.55 4.39 16 28 H 0.05 1.72 8.14 -2.39 -0.02 1.71 16 29 H 0.08 2.53 8.07 -2.39 -0.02 2.51 16 30 H 0.08 2.18 7.79 -2.38 -0.02 2.17 16 31 H 0.02 1.05 8.11 -2.38 -0.02 1.03 16 32 H 0.01 0.85 6.91 -2.39 -0.02 0.83 16 33 H 0.26 14.56 8.31 -92.70 -0.77 13.79 16 34 H 0.07 1.78 6.15 -2.39 -0.01 1.77 16 35 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 38 H 0.06 1.02 6.80 -2.39 -0.02 1.00 16 39 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.39 3.29 9.09 -74.05 -0.67 2.62 16 41 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.05 1.40 7.16 -2.39 -0.02 1.39 16 43 H 0.06 1.96 7.74 -2.39 -0.02 1.94 16 44 H 0.06 2.33 7.70 -2.38 -0.02 2.31 16 Total: -1.00 -71.79 356.10 -3.57 -75.36 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: 0.32 Total: 16.12 kcal Atomic # 6 Polarization: -11.25 SS G_CDS: 4.03 Total: -7.22 kcal Atomic # 7 Polarization: -131.63 SS G_CDS: -3.37 Total: -135.00 kcal Atomic # 8 Polarization: -103.63 SS G_CDS: -6.22 Total: -109.85 kcal Atomic # 14 Polarization: 40.98 SS G_CDS: 2.03 Total: 43.01 kcal Atomic # 16 Polarization: 117.94 SS G_CDS: -0.36 Total: 117.58 kcal Total: -71.79 -3.57 -75.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425206318.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.431 kcal (2) G-P(sol) polarization free energy of solvation -71.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds