Wall clock time and date at job start Tue Mar 31 2020 04:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50696 * 119.99546 * 2 1 4 4 H 1.08997 * 109.59075 * 5.28654 * 3 2 1 5 5 C 1.53198 * 109.58367 * 125.71276 * 3 2 1 6 6 C 1.53042 * 109.31161 * 174.42017 * 5 3 2 7 7 C 1.53038 * 109.53681 * 298.63612 * 6 5 3 8 8 C 1.52765 * 109.38667 * 61.23852 * 7 6 5 9 9 N 1.46918 * 109.00699 * 305.58711 * 8 7 6 10 10 C 1.34779 * 120.63408 * 233.57914 * 9 8 7 11 11 O 1.21361 * 119.99991 * 184.87903 * 10 9 8 12 12 C 1.49306 * 119.99601 * 4.88959 * 10 9 8 13 13 O 1.21406 * 120.00200 * 353.82809 * 12 10 9 14 14 N 1.34778 * 119.99991 * 173.83788 * 12 10 9 15 15 C 1.40298 * 119.99711 * 179.97438 * 14 12 10 16 16 C 1.40719 * 126.10224 * 359.96802 * 15 14 12 17 17 N 1.30878 * 108.37228 * 180.30360 * 16 15 14 18 18 N 1.40060 * 108.43994 * 359.58709 * 17 16 15 19 19 C 1.37291 * 126.05911 * 180.13924 * 18 17 16 20 20 H 1.07998 * 120.00642 * 185.34290 * 19 18 17 21 21 C 1.39007 * 119.99826 * 5.34563 * 19 18 17 22 22 N 1.31282 * 120.00054 * 354.98903 * 21 19 18 23 23 Si 1.86798 * 120.00078 * 174.98271 * 21 19 18 24 24 H 1.48504 * 109.47149 * 94.99998 * 23 21 19 25 25 H 1.48503 * 109.47391 * 214.99909 * 23 21 19 26 26 H 1.48502 * 109.47315 * 335.00144 * 23 21 19 27 27 C 1.35788 * 126.09330 * 180.02562 * 15 14 12 28 28 H 1.08004 * 119.99728 * 179.97438 * 1 2 3 29 29 H 1.07995 * 120.00460 * 0.02562 * 1 2 3 30 30 H 1.08000 * 119.99765 * 179.97438 * 2 1 3 31 31 H 1.08997 * 109.49629 * 294.36868 * 5 3 2 32 32 H 1.08992 * 109.49838 * 54.43540 * 5 3 2 33 33 H 1.09000 * 109.45795 * 58.65414 * 6 5 3 34 34 H 1.08990 * 109.46161 * 178.62823 * 6 5 3 35 35 H 1.09000 * 109.49724 * 181.31651 * 7 6 5 36 36 H 1.09002 * 109.49794 * 301.37523 * 7 6 5 37 37 H 1.09001 * 109.50532 * 185.70483 * 8 7 6 38 38 H 1.09005 * 109.42860 * 65.42876 * 8 7 6 39 39 H 0.97000 * 119.99991 * 359.97438 * 14 12 10 40 40 H 1.07997 * 125.81196 * 0.03416 * 16 15 14 41 41 H 0.96999 * 120.00251 * 180.02562 * 22 21 19 42 42 H 1.07996 * 126.25441 * 359.97438 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 1 1.3606 2.1328 0.0946 5 6 3.0498 1.3286 1.1719 6 6 3.9079 2.5929 1.0859 7 6 4.7079 2.5807 -0.2186 8 6 3.7445 2.5682 -1.4042 9 7 2.8164 1.4392 -1.2546 10 6 2.6625 0.5405 -2.2471 11 8 1.8293 -0.3363 -2.1480 12 6 3.5173 0.6235 -3.4684 13 8 4.2716 1.5629 -3.6187 14 7 3.4515 -0.3443 -4.4041 15 6 4.2544 -0.2659 -5.5520 16 6 5.1682 0.7601 -5.8562 17 7 5.7228 0.4896 -7.0104 18 7 5.1954 -0.7187 -7.4831 19 6 5.5282 -1.3398 -8.6614 20 1 4.9977 -2.2275 -8.9727 21 6 6.5482 -0.8260 -9.4539 22 7 7.1266 0.3062 -9.1268 23 14 7.0959 -1.7467 -10.9842 24 1 6.3836 -1.2050 -12.1693 25 1 8.5599 -1.5772 -11.1664 26 1 6.7796 -3.1898 -10.8334 27 6 4.2874 -1.1661 -6.5681 28 1 -0.5400 -0.9354 -0.0004 29 1 -0.5401 0.9352 -0.0004 30 1 1.8500 -0.9353 0.0004 31 1 2.4980 1.3268 2.1119 32 1 3.6915 0.4489 1.1250 33 1 3.2632 3.4716 1.1083 34 1 4.5941 2.6244 1.9321 35 1 5.3364 3.4699 -0.2684 36 1 5.3350 1.6898 -0.2525 37 1 4.3086 2.4574 -2.3303 38 1 3.1834 3.5025 -1.4252 39 1 2.8490 -1.0949 -4.2840 40 1 5.3734 1.6256 -5.2438 41 1 7.8380 0.6650 -9.6800 42 1 3.7019 -2.0708 -6.6391 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787609235.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:28:41 Heat of formation + Delta-G solvation = 64.101370 kcal Electronic energy + Delta-G solvation = -26552.905137 eV Core-core repulsion = 22729.798807 eV Total energy + Delta-G solvation = -3823.106330 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -41.01514 -39.76737 -38.44662 -37.49640 -34.64849 -34.05566 -33.31648 -32.73421 -30.36350 -29.97077 -28.14955 -26.21745 -25.02442 -23.78689 -23.16441 -21.39194 -20.82742 -19.98624 -19.59610 -19.40957 -17.72429 -17.19008 -16.60239 -15.70647 -15.57823 -15.36809 -15.17003 -14.89602 -14.49821 -14.35097 -14.13112 -13.89150 -13.74132 -13.43434 -13.28012 -13.02586 -12.85882 -12.30948 -11.89719 -11.76359 -11.68162 -11.44453 -11.31631 -11.20465 -11.05963 -10.96916 -10.73851 -10.59513 -10.55320 -10.36344 -9.33770 -9.27357 -8.92651 -8.73254 -8.29482 -8.16990 -6.83440 -6.64206 -4.31445 1.60757 2.13941 2.79674 2.90818 3.02324 3.07319 3.28007 3.66569 3.67970 3.84929 4.32109 4.41060 4.56935 4.67009 4.71863 4.88805 4.92578 4.94355 5.04961 5.10043 5.34099 5.44758 5.59682 5.64675 5.72984 5.80197 5.86273 5.96714 6.10509 6.17007 6.20641 6.31146 6.37086 6.62677 6.71109 6.81432 6.85181 7.05230 7.14455 7.20257 7.69771 7.80931 8.07215 8.14380 8.44964 8.65145 9.27198 9.55555 10.31704 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.028372 B = 0.002769 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.666185 B =10109.946846 C =10898.645219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.111 4.111 3 C 0.167 3.833 4 H 0.078 0.922 5 C -0.126 4.126 6 C -0.122 4.122 7 C -0.133 4.133 8 C 0.040 3.960 9 N -0.577 5.577 10 C 0.514 3.486 11 O -0.512 6.512 12 C 0.487 3.513 13 O -0.512 6.512 14 N -0.577 5.577 15 C -0.073 4.073 16 C -0.024 4.024 17 N -0.261 5.261 18 N -0.137 5.137 19 C -0.322 4.322 20 H 0.118 0.882 21 C 0.047 3.953 22 N -0.766 5.766 23 Si 0.935 3.065 24 H -0.270 1.270 25 H -0.275 1.275 26 H -0.263 1.263 27 C -0.076 4.076 28 H 0.097 0.903 29 H 0.088 0.912 30 H 0.111 0.889 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.066 0.934 37 H 0.170 0.830 38 H 0.062 0.938 39 H 0.410 0.590 40 H 0.178 0.822 41 H 0.276 0.724 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.085 1.697 16.471 18.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.129 4.129 3 C 0.065 3.935 4 H 0.096 0.904 5 C -0.164 4.164 6 C -0.160 4.160 7 C -0.171 4.171 8 C -0.080 4.080 9 N -0.310 5.310 10 C 0.297 3.703 11 O -0.389 6.389 12 C 0.269 3.731 13 O -0.392 6.392 14 N -0.218 5.218 15 C -0.179 4.179 16 C -0.200 4.200 17 N -0.092 5.092 18 N 0.096 4.904 19 C -0.454 4.454 20 H 0.136 0.864 21 C -0.171 4.171 22 N -0.392 5.392 23 Si 0.759 3.241 24 H -0.196 1.196 25 H -0.200 1.200 26 H -0.187 1.187 27 C -0.227 4.227 28 H 0.115 0.885 29 H 0.107 0.893 30 H 0.129 0.871 31 H 0.094 0.906 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.094 0.906 36 H 0.084 0.916 37 H 0.186 0.814 38 H 0.080 0.920 39 H 0.245 0.755 40 H 0.195 0.805 41 H 0.087 0.913 42 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -5.973 2.433 15.435 16.728 hybrid contribution -0.786 -1.019 0.171 1.298 sum -6.759 1.413 15.606 17.065 Atomic orbital electron populations 1.23458 0.95439 1.01289 1.04039 1.22557 0.96026 0.96736 0.97603 1.20523 0.92684 0.96770 0.83534 0.90385 1.21929 0.97942 0.99134 0.97377 1.21573 0.98723 0.97549 0.98160 1.21823 0.98156 1.02838 0.94269 1.23443 0.92166 0.87378 1.05048 1.48090 1.42278 1.26551 1.14120 1.20168 0.83853 0.81906 0.84335 1.90742 1.34744 1.35204 1.78162 1.19764 0.84801 0.83970 0.84574 1.90116 1.40609 1.32614 1.75857 1.42163 1.38966 1.23237 1.17438 1.17263 1.06417 1.02681 0.91498 1.24144 0.98510 1.00474 0.96896 1.78264 1.21970 0.98114 1.10807 1.44571 1.21234 1.12553 1.12044 1.19935 1.19202 1.10719 0.95585 0.86413 1.25668 0.95806 0.95811 0.99792 1.70206 1.18790 1.14959 1.35295 0.85795 0.78530 0.79790 0.79976 1.19582 1.19976 1.18672 1.21314 1.04899 1.02672 0.93853 0.88501 0.89333 0.87095 0.90624 0.91229 0.91860 0.91685 0.90564 0.91569 0.81407 0.92001 0.75479 0.80495 0.91327 0.83342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.27 14.08 29.01 0.41 -1.86 16 2 C -0.11 -1.31 5.65 -36.03 -0.20 -1.51 16 3 C 0.17 1.84 3.24 -68.75 -0.22 1.61 16 4 H 0.08 0.80 7.80 -51.93 -0.41 0.40 16 5 C -0.13 -1.12 5.35 -26.61 -0.14 -1.26 16 6 C -0.12 -1.02 5.89 -26.69 -0.16 -1.18 16 7 C -0.13 -1.33 6.06 -26.83 -0.16 -1.49 16 8 C 0.04 0.48 6.25 -3.93 -0.02 0.46 16 9 N -0.58 -7.56 2.98 -167.35 -0.50 -8.06 16 10 C 0.51 7.97 7.64 -11.65 -0.09 7.88 16 11 O -0.51 -8.32 13.01 5.49 0.07 -8.24 16 12 C 0.49 8.58 7.78 -11.65 -0.09 8.49 16 13 O -0.51 -9.68 10.16 5.45 0.06 -9.62 16 14 N -0.58 -10.60 5.45 -10.45 -0.06 -10.66 16 15 C -0.07 -1.63 6.90 -83.92 -0.58 -2.21 16 16 C -0.02 -0.61 10.85 -17.02 -0.18 -0.80 16 17 N -0.26 -7.33 10.41 30.81 0.32 -7.01 16 18 N -0.14 -3.68 3.73 -11.40 -0.04 -3.72 16 19 C -0.32 -8.31 10.24 -14.82 -0.15 -8.46 16 20 H 0.12 2.71 7.84 -52.49 -0.41 2.30 16 21 C 0.05 1.18 5.50 -17.50 -0.10 1.09 16 22 N -0.77 -20.81 11.83 55.50 0.66 -20.16 16 23 Si 0.94 18.45 29.55 -169.99 -5.02 13.43 16 24 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 25 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 26 H -0.26 -4.97 7.11 56.52 0.40 -4.56 16 27 C -0.08 -1.75 11.50 -16.38 -0.19 -1.94 16 28 H 0.10 1.02 8.06 -52.48 -0.42 0.60 16 29 H 0.09 0.90 7.85 -52.49 -0.41 0.49 16 30 H 0.11 1.41 7.64 -52.49 -0.40 1.01 16 31 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.17 2.48 3.70 -57.22 -0.21 2.27 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.41 6.54 8.31 -40.82 -0.34 6.20 16 40 H 0.18 4.24 5.92 -52.49 -0.31 3.93 16 41 H 0.28 6.84 8.31 -40.82 -0.34 6.50 16 42 H 0.15 2.88 8.06 -52.49 -0.42 2.45 16 LS Contribution 345.81 15.07 5.21 5.21 Total: -1.00 -30.33 345.81 -6.62 -36.96 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: -5.43 Total: 13.07 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: -1.88 Total: -1.19 kcal Atomic # 7 Polarization: -49.98 SS G_CDS: 0.38 Total: -49.60 kcal Atomic # 8 Polarization: -17.99 SS G_CDS: 0.13 Total: -17.87 kcal Atomic # 14 Polarization: 18.45 SS G_CDS: -5.02 Total: 13.43 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.33 -6.62 -36.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787609235.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.057 kcal (2) G-P(sol) polarization free energy of solvation -30.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds