Wall clock time and date at job start Tue Mar 31 2020 04:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50696 * 119.99546 * 2 1 4 4 H 1.08997 * 109.59075 * 5.28654 * 3 2 1 5 5 C 1.53198 * 109.58367 * 125.71276 * 3 2 1 6 6 C 1.53042 * 109.31161 * 174.42017 * 5 3 2 7 7 C 1.53038 * 109.53681 * 298.63612 * 6 5 3 8 8 C 1.52765 * 109.38667 * 61.23852 * 7 6 5 9 9 N 1.46918 * 109.00699 * 305.58711 * 8 7 6 10 10 C 1.34779 * 120.63408 * 233.57914 * 9 8 7 11 11 O 1.21361 * 119.99991 * 184.87903 * 10 9 8 12 12 C 1.49306 * 119.99601 * 4.88959 * 10 9 8 13 13 O 1.21406 * 120.00200 * 353.82809 * 12 10 9 14 14 N 1.34778 * 119.99991 * 173.83788 * 12 10 9 15 15 C 1.40298 * 119.99711 * 179.97438 * 14 12 10 16 16 C 1.40719 * 126.10224 * 359.96802 * 15 14 12 17 17 N 1.30878 * 108.37228 * 180.30360 * 16 15 14 18 18 N 1.40060 * 108.43994 * 359.58709 * 17 16 15 19 19 C 1.37291 * 126.05911 * 180.13924 * 18 17 16 20 20 H 1.07998 * 120.00642 * 185.34290 * 19 18 17 21 21 C 1.39007 * 119.99826 * 5.34563 * 19 18 17 22 22 N 1.31282 * 120.00054 * 354.98903 * 21 19 18 23 23 Si 1.86798 * 120.00078 * 174.98271 * 21 19 18 24 24 H 1.48504 * 109.47149 * 94.99998 * 23 21 19 25 25 H 1.48503 * 109.47391 * 214.99909 * 23 21 19 26 26 H 1.48502 * 109.47315 * 335.00144 * 23 21 19 27 27 C 1.35788 * 126.09330 * 180.02562 * 15 14 12 28 28 H 1.08004 * 119.99728 * 179.97438 * 1 2 3 29 29 H 1.07995 * 120.00460 * 0.02562 * 1 2 3 30 30 H 1.08000 * 119.99765 * 179.97438 * 2 1 3 31 31 H 1.08997 * 109.49629 * 294.36868 * 5 3 2 32 32 H 1.08992 * 109.49838 * 54.43540 * 5 3 2 33 33 H 1.09000 * 109.45795 * 58.65414 * 6 5 3 34 34 H 1.08990 * 109.46161 * 178.62823 * 6 5 3 35 35 H 1.09000 * 109.49724 * 181.31651 * 7 6 5 36 36 H 1.09002 * 109.49794 * 301.37523 * 7 6 5 37 37 H 1.09001 * 109.50532 * 185.70483 * 8 7 6 38 38 H 1.09005 * 109.42860 * 65.42876 * 8 7 6 39 39 H 0.97000 * 119.99991 * 359.97438 * 14 12 10 40 40 H 1.07997 * 125.81196 * 0.03416 * 16 15 14 41 41 H 0.96999 * 120.00251 * 180.02562 * 22 21 19 42 42 H 1.07996 * 126.25441 * 359.97438 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 1 1.3606 2.1328 0.0946 5 6 3.0498 1.3286 1.1719 6 6 3.9079 2.5929 1.0859 7 6 4.7079 2.5807 -0.2186 8 6 3.7445 2.5682 -1.4042 9 7 2.8164 1.4392 -1.2546 10 6 2.6625 0.5405 -2.2471 11 8 1.8293 -0.3363 -2.1480 12 6 3.5173 0.6235 -3.4684 13 8 4.2716 1.5629 -3.6187 14 7 3.4515 -0.3443 -4.4041 15 6 4.2544 -0.2659 -5.5520 16 6 5.1682 0.7601 -5.8562 17 7 5.7228 0.4896 -7.0104 18 7 5.1954 -0.7187 -7.4831 19 6 5.5282 -1.3398 -8.6614 20 1 4.9977 -2.2275 -8.9727 21 6 6.5482 -0.8260 -9.4539 22 7 7.1266 0.3062 -9.1268 23 14 7.0959 -1.7467 -10.9842 24 1 6.3836 -1.2050 -12.1693 25 1 8.5599 -1.5772 -11.1664 26 1 6.7796 -3.1898 -10.8334 27 6 4.2874 -1.1661 -6.5681 28 1 -0.5400 -0.9354 -0.0004 29 1 -0.5401 0.9352 -0.0004 30 1 1.8500 -0.9353 0.0004 31 1 2.4980 1.3268 2.1119 32 1 3.6915 0.4489 1.1250 33 1 3.2632 3.4716 1.1083 34 1 4.5941 2.6244 1.9321 35 1 5.3364 3.4699 -0.2684 36 1 5.3350 1.6898 -0.2525 37 1 4.3086 2.4574 -2.3303 38 1 3.1834 3.5025 -1.4252 39 1 2.8490 -1.0949 -4.2840 40 1 5.3734 1.6256 -5.2438 41 1 7.8380 0.6650 -9.6800 42 1 3.7019 -2.0708 -6.6391 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787609235.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:28:40 Heat of formation + Delta-G solvation = 44.711694 kcal Electronic energy + Delta-G solvation = -26553.745937 eV Core-core repulsion = 22729.798807 eV Total energy + Delta-G solvation = -3823.947130 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.31639 -41.44991 -39.86217 -38.60537 -36.20763 -35.08322 -34.96676 -33.76808 -32.29348 -30.83053 -29.91989 -27.57463 -26.59819 -24.88725 -24.22105 -22.99237 -22.18179 -21.35235 -20.81896 -20.63556 -19.43667 -18.50606 -17.79129 -17.45087 -16.97979 -16.81338 -16.49744 -15.81018 -15.79796 -15.68900 -15.45865 -15.07171 -14.94599 -14.77350 -14.57111 -14.42178 -13.99731 -13.51804 -13.42100 -13.17492 -12.95079 -12.90764 -12.69399 -12.52840 -12.08178 -12.02011 -11.97505 -11.86129 -11.67917 -11.44836 -11.07848 -10.86308 -10.43139 -10.14000 -9.75509 -9.45393 -8.63321 -8.49466 -6.26738 0.26410 1.06351 1.29348 1.41087 1.58543 1.70542 1.72174 2.03213 2.12342 2.50021 2.52647 2.84963 3.06765 3.36847 3.69016 3.91275 3.94850 4.09708 4.19211 4.28683 4.39102 4.46741 4.52118 4.62267 4.81752 4.86823 4.90103 4.95855 4.98239 5.01958 5.04384 5.15230 5.18847 5.26532 5.34914 5.43693 5.61771 5.73704 5.91501 5.92831 6.06094 6.21830 6.39699 6.68624 6.78492 7.08224 7.40871 7.62854 8.49868 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.028372 B = 0.002769 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.666185 B =10109.946846 C =10898.645219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.124 4.124 3 C 0.164 3.836 4 H 0.094 0.906 5 C -0.121 4.121 6 C -0.117 4.117 7 C -0.130 4.130 8 C 0.037 3.963 9 N -0.569 5.569 10 C 0.517 3.483 11 O -0.522 6.522 12 C 0.488 3.512 13 O -0.525 6.525 14 N -0.578 5.578 15 C -0.058 4.058 16 C -0.044 4.044 17 N -0.308 5.308 18 N -0.163 5.163 19 C -0.354 4.354 20 H 0.140 0.860 21 C -0.003 4.003 22 N -0.819 5.819 23 Si 1.018 2.982 24 H -0.265 1.265 25 H -0.276 1.276 26 H -0.245 1.245 27 C -0.074 4.074 28 H 0.100 0.900 29 H 0.100 0.900 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.058 0.942 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.051 0.949 37 H 0.144 0.856 38 H 0.077 0.923 39 H 0.422 0.578 40 H 0.179 0.821 41 H 0.278 0.722 42 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.375 1.178 17.917 19.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.143 4.143 3 C 0.063 3.937 4 H 0.111 0.889 5 C -0.159 4.159 6 C -0.155 4.155 7 C -0.168 4.168 8 C -0.083 4.083 9 N -0.302 5.302 10 C 0.299 3.701 11 O -0.399 6.399 12 C 0.271 3.729 13 O -0.405 6.405 14 N -0.222 5.222 15 C -0.164 4.164 16 C -0.220 4.220 17 N -0.139 5.139 18 N 0.069 4.931 19 C -0.485 4.485 20 H 0.158 0.842 21 C -0.216 4.216 22 N -0.447 5.447 23 Si 0.837 3.163 24 H -0.190 1.190 25 H -0.201 1.201 26 H -0.168 1.168 27 C -0.225 4.225 28 H 0.118 0.882 29 H 0.119 0.881 30 H 0.116 0.884 31 H 0.116 0.884 32 H 0.077 0.923 33 H 0.095 0.905 34 H 0.099 0.901 35 H 0.107 0.893 36 H 0.070 0.930 37 H 0.160 0.840 38 H 0.096 0.904 39 H 0.260 0.740 40 H 0.196 0.804 41 H 0.088 0.912 42 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -7.292 1.921 16.937 18.540 hybrid contribution -0.505 -0.781 -0.055 0.932 sum -7.797 1.139 16.882 18.630 Atomic orbital electron populations 1.23637 0.95311 1.02076 1.02559 1.22554 0.96346 0.96667 0.98746 1.20780 0.93222 0.96872 0.82850 0.88854 1.21930 0.97581 0.99069 0.97332 1.21562 0.98844 0.97648 0.97422 1.21800 0.97799 1.02795 0.94394 1.23357 0.92467 0.87551 1.04908 1.48205 1.41996 1.25767 1.14212 1.19704 0.83676 0.82655 0.84068 1.90747 1.35058 1.35774 1.78336 1.20397 0.84392 0.83166 0.84971 1.90178 1.40934 1.32967 1.76377 1.42114 1.39130 1.24350 1.16621 1.17293 1.05501 1.01273 0.92366 1.24282 0.99539 1.01432 0.96729 1.78155 1.23782 0.99757 1.12245 1.44834 1.22477 1.12659 1.13158 1.20636 1.20216 1.11697 0.95967 0.84228 1.26857 0.95264 0.96361 1.03094 1.70369 1.19888 1.17178 1.37255 0.84590 0.77622 0.78983 0.75107 1.18969 1.20068 1.16817 1.21994 1.03931 1.03600 0.93014 0.88184 0.88142 0.88420 0.88373 0.92295 0.90547 0.90074 0.89257 0.93049 0.83995 0.90436 0.73996 0.80398 0.91219 0.79694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.97 14.08 67.78 0.95 -3.02 16 2 C -0.12 -2.72 5.65 25.64 0.14 -2.58 16 3 C 0.16 3.21 3.24 44.23 0.14 3.35 16 4 H 0.09 1.60 7.80 -2.39 -0.02 1.58 16 5 C -0.12 -1.83 5.35 30.67 0.16 -1.66 16 6 C -0.12 -1.58 5.89 30.62 0.18 -1.40 16 7 C -0.13 -2.36 6.06 30.53 0.19 -2.18 16 8 C 0.04 0.86 6.25 86.22 0.54 1.40 16 9 N -0.57 -14.11 2.98 -801.73 -2.39 -16.49 16 10 C 0.52 15.60 7.64 87.22 0.67 16.26 16 11 O -0.52 -16.38 13.01 -3.28 -0.04 -16.42 16 12 C 0.49 17.18 7.78 87.22 0.68 17.86 16 13 O -0.52 -20.19 10.16 -3.42 -0.03 -20.22 16 14 N -0.58 -21.11 5.45 -305.33 -1.66 -22.77 16 15 C -0.06 -2.63 6.90 37.82 0.26 -2.37 16 16 C -0.04 -2.30 10.85 85.44 0.93 -1.37 16 17 N -0.31 -17.99 10.41 -56.44 -0.59 -18.58 16 18 N -0.16 -8.91 3.73 -189.98 -0.71 -9.62 16 19 C -0.35 -18.45 10.24 84.02 0.86 -17.59 16 20 H 0.14 6.34 7.84 -2.91 -0.02 6.31 16 21 C 0.00 -0.17 5.50 84.96 0.47 0.29 16 22 N -0.82 -46.15 11.83 21.66 0.26 -45.90 16 23 Si 1.02 37.86 29.55 68.60 2.03 39.89 16 24 H -0.26 -9.51 7.11 99.48 0.71 -8.80 16 25 H -0.28 -10.15 7.11 99.48 0.71 -9.44 16 26 H -0.25 -8.31 7.11 99.48 0.71 -7.60 16 27 C -0.07 -3.43 11.50 83.41 0.96 -2.47 16 28 H 0.10 1.92 8.06 -2.91 -0.02 1.90 16 29 H 0.10 1.77 7.85 -2.91 -0.02 1.74 16 30 H 0.10 2.39 7.64 -2.91 -0.02 2.37 16 31 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.14 4.20 3.70 -86.21 -0.32 3.88 16 38 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 39 H 0.42 13.11 8.31 -92.71 -0.77 12.34 16 40 H 0.18 8.94 5.92 -2.91 -0.02 8.93 16 41 H 0.28 14.35 8.31 -92.71 -0.77 13.58 16 42 H 0.19 6.86 8.06 -2.91 -0.02 6.83 16 Total: -1.00 -68.15 345.81 3.96 -64.19 By element: Atomic # 1 Polarization: 41.44 SS G_CDS: -0.02 Total: 41.41 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: 7.13 Total: 4.52 kcal Atomic # 7 Polarization: -108.27 SS G_CDS: -5.09 Total: -113.36 kcal Atomic # 8 Polarization: -36.56 SS G_CDS: -0.08 Total: -36.64 kcal Atomic # 14 Polarization: 37.86 SS G_CDS: 2.03 Total: 39.89 kcal Total: -68.15 3.96 -64.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787609235.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.898 kcal (2) G-P(sol) polarization free energy of solvation -68.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds