Wall clock time and date at job start Tue Mar 31 2020 04:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50700 * 119.99957 * 2 1 4 4 C 1.52999 * 109.47208 * 125.00242 * 3 2 1 5 5 H 1.08995 * 109.47098 * 54.99759 * 4 3 2 6 6 N 1.46498 * 109.47257 * 294.99824 * 4 3 2 7 7 C 1.34777 * 119.99828 * 84.72116 * 6 4 3 8 8 O 1.21593 * 119.99949 * 0.28071 * 7 6 4 9 9 N 1.34777 * 120.00128 * 180.27942 * 7 6 4 10 10 C 1.46499 * 120.00065 * 180.02562 * 9 7 6 11 11 C 1.50703 * 109.47138 * 179.97438 * 10 9 7 12 12 O 1.21294 * 119.99626 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00072 * 179.97438 * 11 10 9 14 14 C 1.37097 * 120.00087 * 179.97438 * 13 11 10 15 15 H 1.08001 * 120.00028 * 0.02562 * 14 13 11 16 16 C 1.38951 * 120.00330 * 179.97438 * 14 13 11 17 17 N 1.31408 * 119.99464 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00303 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46807 * 60.00203 * 18 16 14 20 20 H 1.48498 * 109.47276 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47057 * 300.00094 * 18 16 14 22 22 C 1.50696 * 109.47087 * 174.99855 * 4 3 2 23 23 C 1.38656 * 120.79249 * 79.72116 * 22 4 3 24 24 C 1.38196 * 119.16583 * 179.75306 * 23 22 4 25 25 N 1.31873 * 120.76512 * 0.53321 * 24 23 22 26 26 C 1.31873 * 121.72310 * 359.73978 * 25 24 23 27 27 C 1.38208 * 120.76585 * 359.97438 * 26 25 24 28 28 H 1.07999 * 120.00105 * 359.97438 * 1 2 3 29 29 H 1.07994 * 119.99785 * 180.02562 * 1 2 3 30 30 H 1.07999 * 120.00105 * 180.02562 * 2 1 3 31 31 H 1.08997 * 109.47245 * 4.99992 * 3 2 1 32 32 H 1.09001 * 109.47137 * 244.99942 * 3 2 1 33 33 H 0.97001 * 120.00384 * 265.00562 * 6 4 3 34 34 H 0.97000 * 119.99549 * 359.97438 * 9 7 6 35 35 H 1.09000 * 109.47602 * 299.99940 * 10 9 7 36 36 H 1.09006 * 109.46868 * 59.99976 * 10 9 7 37 37 H 0.97002 * 120.00040 * 0.02562 * 13 11 10 38 38 H 0.97001 * 120.00017 * 179.97438 * 17 16 14 39 39 H 1.08001 * 120.41042 * 359.97438 * 23 22 4 40 40 H 1.07995 * 119.62188 * 180.29302 * 24 23 22 41 41 H 1.08000 * 119.61465 * 180.02562 * 26 25 24 42 42 H 1.07992 * 120.41836 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3331 1.1816 5 1 3.6827 0.4574 1.1403 6 7 2.2787 1.3223 2.4361 7 6 1.8652 0.1531 2.9637 8 8 2.1243 -0.8932 2.4009 9 7 1.1644 0.1435 4.1149 10 6 0.7154 -1.1275 4.6886 11 6 -0.0396 -0.8633 5.9658 12 8 -0.1883 0.2748 6.3580 13 7 -0.5504 -1.8915 6.6717 14 6 -1.2367 -1.6512 7.8339 15 1 -1.3685 -0.6379 8.1836 16 6 -1.7638 -2.7112 8.5615 17 7 -1.6039 -3.9441 8.1357 18 14 -2.6996 -2.3838 10.1446 19 1 -3.8773 -1.5266 9.8552 20 1 -3.1553 -3.6721 10.7258 21 1 -1.8097 -1.6923 11.1116 22 6 3.8748 2.5825 1.1120 23 6 3.3720 3.8006 1.5434 24 6 4.1731 4.9242 1.4691 25 7 5.3976 4.8488 0.9854 26 6 5.9065 3.7087 0.5609 27 6 5.1665 2.5425 0.6097 28 1 -0.5400 0.9353 0.0004 29 1 -0.5399 -0.9353 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3586 2.1316 0.0896 32 1 2.6213 1.4026 -0.9314 33 1 2.0719 2.1570 2.8851 34 1 0.9581 0.9782 4.5640 35 1 0.0628 -1.6361 3.9790 36 1 1.5804 -1.7557 4.9015 37 1 -0.4317 -2.8017 6.3579 38 1 -1.9715 -4.6842 8.6437 39 1 2.3682 3.8695 1.9360 40 1 3.7906 5.8758 1.8076 41 1 6.9136 3.6860 0.1714 42 1 5.5890 1.6118 0.2610 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000807553607.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:26:51 Heat of formation + Delta-G solvation = -10.817583 kcal Electronic energy + Delta-G solvation = -25589.272579 eV Core-core repulsion = 21762.917518 eV Total energy + Delta-G solvation = -3826.355060 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.85220 -39.78169 -38.30102 -36.66259 -34.40425 -33.91735 -33.54694 -32.50305 -31.53999 -31.37113 -29.07783 -27.28265 -24.86324 -24.33825 -23.86950 -21.77073 -20.56052 -19.89492 -19.58749 -18.53970 -18.06042 -17.27882 -16.56683 -16.07720 -15.87554 -15.58507 -15.51657 -15.03449 -14.64046 -14.51044 -14.17484 -14.10441 -13.96923 -13.83078 -13.79419 -13.39027 -13.18375 -12.35688 -12.18870 -12.02970 -11.95121 -11.66639 -11.63694 -11.11308 -10.99305 -10.51661 -10.32472 -10.12230 -9.91965 -9.85146 -9.63577 -9.62138 -9.51058 -8.91316 -8.64612 -8.63338 -8.10847 -6.52130 -3.94222 0.77280 0.82091 2.40408 2.73878 3.12938 3.20835 3.24682 3.36970 3.48203 3.74495 4.06343 4.08110 4.13254 4.35969 4.45483 4.68535 4.79899 4.85556 4.89143 4.96353 5.16533 5.17297 5.25007 5.33287 5.42454 5.42854 5.59491 5.69124 5.87163 5.94072 5.99589 6.05050 6.07400 6.31903 6.42068 6.72410 6.77327 6.85930 7.02701 7.45015 7.61833 7.91401 8.19490 8.44422 8.77353 9.03841 9.38698 9.86635 10.64709 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.020281 B = 0.002438 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.280664 B =11482.293889 C =12283.479600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.130 4.130 3 C -0.100 4.100 4 C 0.209 3.791 5 H 0.104 0.896 6 N -0.744 5.744 7 C 0.709 3.291 8 O -0.589 6.589 9 N -0.724 5.724 10 C 0.130 3.870 11 C 0.428 3.572 12 O -0.598 6.598 13 N -0.549 5.549 14 C -0.305 4.305 15 H 0.105 0.895 16 C 0.026 3.974 17 N -0.895 5.895 18 Si 0.934 3.066 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.273 1.273 22 C -0.045 4.045 23 C -0.166 4.166 24 C 0.103 3.897 25 N -0.487 5.487 26 C 0.101 3.899 27 C -0.160 4.160 28 H 0.088 0.912 29 H 0.095 0.905 30 H 0.116 0.884 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.395 0.605 34 H 0.406 0.594 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.396 0.604 38 H 0.275 0.725 39 H 0.135 0.865 40 H 0.157 0.843 41 H 0.157 0.843 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.392 11.264 -16.864 22.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.148 4.148 3 C -0.138 4.138 4 C 0.104 3.896 5 H 0.121 0.879 6 N -0.400 5.400 7 C 0.409 3.591 8 O -0.468 6.468 9 N -0.381 5.381 10 C 0.002 3.998 11 C 0.214 3.786 12 O -0.485 6.485 13 N -0.184 5.184 14 C -0.435 4.435 15 H 0.122 0.878 16 C -0.177 4.177 17 N -0.535 5.535 18 Si 0.760 3.240 19 H -0.198 1.198 20 H -0.208 1.208 21 H -0.198 1.198 22 C -0.053 4.053 23 C -0.186 4.186 24 C -0.054 4.054 25 N -0.196 5.196 26 C -0.056 4.056 27 C -0.181 4.181 28 H 0.106 0.894 29 H 0.113 0.887 30 H 0.134 0.866 31 H 0.088 0.912 32 H 0.099 0.901 33 H 0.230 0.770 34 H 0.243 0.757 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.230 0.770 38 H 0.085 0.915 39 H 0.153 0.847 40 H 0.174 0.826 41 H 0.174 0.826 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 10.946 11.575 -17.030 23.320 hybrid contribution -1.214 -0.529 1.168 1.766 sum 9.733 11.046 -15.862 21.641 Atomic orbital electron populations 1.23688 0.95955 1.01326 1.02669 1.22769 0.95911 0.97819 0.98318 1.21220 0.98262 0.96878 0.97470 1.19570 0.91461 0.95113 0.83489 0.87859 1.45100 1.60924 1.07985 1.26009 1.15735 0.78791 0.83851 0.80706 1.90884 1.62427 1.30619 1.62824 1.44752 1.58280 1.10747 1.24304 1.20763 0.99202 0.85236 0.94607 1.19772 0.85766 0.86200 0.86878 1.90490 1.64447 1.21807 1.71772 1.41780 1.47075 1.07948 1.21562 1.19672 1.29872 0.95278 0.98668 0.87764 1.25322 0.97881 0.94605 0.99890 1.69605 1.45288 0.98547 1.40048 0.85875 0.79685 0.77531 0.80891 1.19776 1.20847 1.19784 1.20405 0.94360 0.94997 0.95567 1.21991 1.01692 0.93167 1.01746 1.22783 0.89481 0.98494 0.94642 1.67699 1.13533 1.28525 1.09858 1.22790 0.99851 0.87648 0.95284 1.22044 0.94186 1.00613 1.01217 0.89371 0.88698 0.86589 0.91174 0.90121 0.77026 0.75724 0.90051 0.90098 0.77025 0.91531 0.84709 0.82550 0.82550 0.84355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.38 14.32 29.01 0.42 -1.96 16 2 C -0.13 -1.51 6.93 -36.03 -0.25 -1.76 16 3 C -0.10 -0.91 5.32 -27.88 -0.15 -1.06 16 4 C 0.21 2.00 2.49 -69.09 -0.17 1.83 16 5 H 0.10 1.11 7.48 -51.93 -0.39 0.72 16 6 N -0.74 -8.27 5.01 -59.82 -0.30 -8.57 16 7 C 0.71 10.70 7.87 -86.92 -0.68 10.01 16 8 O -0.59 -10.32 13.71 5.28 0.07 -10.25 16 9 N -0.72 -11.75 5.53 -66.41 -0.37 -12.12 16 10 C 0.13 2.38 6.15 -5.19 -0.03 2.34 16 11 C 0.43 9.72 7.85 -10.98 -0.09 9.63 16 12 O -0.60 -15.14 15.24 5.55 0.08 -15.06 16 13 N -0.55 -13.53 5.29 -10.96 -0.06 -13.58 16 14 C -0.31 -8.26 9.68 -14.93 -0.14 -8.41 16 15 H 0.10 2.93 7.16 -52.49 -0.38 2.55 16 16 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 17 N -0.89 -23.80 13.05 55.50 0.72 -23.08 16 18 Si 0.93 20.47 29.55 -169.99 -5.02 15.44 16 19 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 20 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 21 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 22 C -0.04 -0.37 4.98 -104.32 -0.52 -0.89 16 23 C -0.17 -1.27 9.15 -39.44 -0.36 -1.63 16 24 C 0.10 0.84 11.18 -17.55 -0.20 0.64 16 25 N -0.49 -4.67 10.36 -13.25 -0.14 -4.81 16 26 C 0.10 0.80 11.18 -17.54 -0.20 0.60 16 27 C -0.16 -1.21 9.78 -39.44 -0.39 -1.59 16 28 H 0.09 0.97 7.84 -52.49 -0.41 0.56 16 29 H 0.09 1.16 8.06 -52.49 -0.42 0.74 16 30 H 0.12 1.51 7.52 -52.49 -0.39 1.11 16 31 H 0.07 0.62 7.79 -51.93 -0.40 0.21 16 32 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.39 3.68 6.98 -40.82 -0.29 3.39 16 34 H 0.41 6.48 7.45 -40.82 -0.30 6.18 16 35 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 36 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 37 H 0.40 9.39 7.90 -40.82 -0.32 9.07 16 38 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 39 H 0.14 0.82 7.03 -52.49 -0.37 0.45 16 40 H 0.16 0.91 8.06 -52.49 -0.42 0.49 16 41 H 0.16 0.84 8.06 -52.49 -0.42 0.41 16 42 H 0.14 0.78 8.06 -52.49 -0.42 0.35 16 LS Contribution 363.57 15.07 5.48 5.48 Total: -1.00 -32.17 363.57 -7.73 -39.90 By element: Atomic # 1 Polarization: 23.66 SS G_CDS: -5.35 Total: 18.31 kcal Atomic # 6 Polarization: 11.19 SS G_CDS: -2.86 Total: 8.33 kcal Atomic # 7 Polarization: -62.02 SS G_CDS: -0.14 Total: -62.16 kcal Atomic # 8 Polarization: -25.46 SS G_CDS: 0.16 Total: -25.31 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.17 -7.73 -39.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807553607.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.084 kcal (2) G-P(sol) polarization free energy of solvation -32.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds