Wall clock time and date at job start Tue Mar 31 2020 05:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34774 * 119.99956 * 2 1 4 4 O 1.21279 * 120.00213 * 359.97438 * 3 2 1 5 5 C 1.50702 * 120.00058 * 180.02562 * 3 2 1 6 6 H 1.08999 * 110.88329 * 303.87336 * 5 3 2 7 7 C 1.55161 * 111.00437 * 179.97438 * 5 3 2 8 8 C 1.54324 * 102.93933 * 206.38389 * 7 5 3 9 9 N 1.47017 * 107.27404 * 22.18928 * 8 7 5 10 10 C 1.34772 * 125.64993 * 181.02195 * 9 8 7 11 11 O 1.21576 * 120.00545 * 180.02562 * 10 9 8 12 12 N 1.34777 * 120.00090 * 0.02958 * 10 9 8 13 13 C 1.39249 * 120.00357 * 185.16002 * 12 10 9 14 14 C 1.39680 * 119.57502 * 174.65393 * 13 12 10 15 15 C 1.38650 * 119.49609 * 179.97438 * 14 13 12 16 16 C 1.38351 * 118.66646 * 0.27117 * 15 14 13 17 17 C 1.40574 * 119.13321 * 359.43863 * 16 15 14 18 18 C 1.41331 * 119.78787 * 180.31872 * 17 16 15 19 19 H 1.07995 * 120.00272 * 0.25634 * 18 17 16 20 20 C 1.40030 * 120.00053 * 180.25440 * 18 17 16 21 21 N 1.30749 * 119.99947 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00321 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47125 * 89.99909 * 22 20 18 24 24 H 1.48502 * 109.47235 * 209.99853 * 22 20 18 25 25 H 1.48502 * 109.46710 * 329.99911 * 22 20 18 26 26 N 1.31900 * 119.57170 * 354.62116 * 13 12 10 27 27 C 1.47425 * 108.70440 * 1.28909 * 9 8 7 28 28 H 1.09001 * 109.46606 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47256 * 300.00302 * 1 2 3 30 30 H 1.09002 * 109.46642 * 60.00934 * 1 2 3 31 31 H 0.97005 * 120.00362 * 179.97438 * 2 1 3 32 32 H 1.08996 * 110.72253 * 88.01874 * 7 5 3 33 33 H 1.09003 * 110.87086 * 324.81440 * 7 5 3 34 34 H 1.09000 * 109.87949 * 262.77260 * 8 7 5 35 35 H 1.09001 * 110.01042 * 141.68102 * 8 7 5 36 36 H 0.97004 * 119.99758 * 5.15013 * 12 10 9 37 37 H 1.08003 * 120.25623 * 0.02562 * 14 13 12 38 38 H 1.07999 * 120.66742 * 179.97438 * 15 14 13 39 39 H 1.08004 * 120.43463 * 179.70554 * 16 15 14 40 40 H 0.96997 * 120.00041 * 179.97438 * 21 20 18 41 41 H 1.09000 * 110.36497 * 94.47821 * 27 9 8 42 42 H 1.09001 * 110.37068 * 216.80733 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2175 -0.0005 5 6 3.6459 1.1672 -0.0006 6 1 4.0348 0.5994 0.8447 7 6 4.2020 2.6157 -0.0011 8 6 5.5835 2.4552 -0.6700 9 7 5.5435 1.2180 -1.4631 10 6 6.5641 0.7141 -2.1847 11 8 6.4173 -0.3210 -2.8052 12 7 7.7478 1.3577 -2.2184 13 6 8.7675 0.8971 -3.0474 14 6 9.9493 1.6330 -3.1606 15 6 10.9637 1.1726 -3.9861 16 6 10.7694 -0.0076 -4.6814 17 6 9.5598 -0.7056 -4.5204 18 6 9.3494 -1.9161 -5.2188 19 1 10.1182 -2.3042 -5.8705 20 6 8.1441 -2.6123 -5.0658 21 7 7.2136 -2.1427 -4.2765 22 14 7.8656 -4.2119 -5.9895 23 1 8.3405 -5.3502 -5.1624 24 1 6.4167 -4.3752 -6.2710 25 1 8.6183 -4.1819 -7.2693 26 7 8.6050 -0.2287 -3.7151 27 6 4.1999 0.6231 -1.3435 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 1.9501 -0.8401 0.0004 32 1 4.3078 2.9886 1.0176 33 1 3.5639 3.2765 -0.5879 34 1 6.3584 2.3815 0.0930 35 1 5.7840 3.3064 -1.3207 36 1 7.8894 2.1419 -1.6652 37 1 10.0724 2.5532 -2.6087 38 1 11.8851 1.7267 -4.0880 39 1 11.5387 -0.3899 -5.3360 40 1 6.3785 -2.6247 -4.1708 41 1 3.5690 0.9412 -2.1735 42 1 4.2678 -0.4644 -1.3126 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881143874.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:05 Heat of formation + Delta-G solvation = 5.977860 kcal Electronic energy + Delta-G solvation = -26566.174063 eV Core-core repulsion = 22740.547308 eV Total energy + Delta-G solvation = -3825.626755 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.44728 -39.40700 -38.01988 -36.56051 -34.84820 -34.08025 -33.00560 -31.58181 -30.25785 -29.42614 -28.85811 -26.87922 -25.53012 -23.96020 -22.09651 -21.68102 -21.10305 -20.24890 -19.13486 -18.16641 -17.67798 -17.08676 -16.18055 -16.03679 -15.61816 -15.29865 -14.69992 -14.45121 -14.27449 -14.23852 -13.78931 -13.54640 -13.51673 -13.09015 -12.80189 -12.67791 -12.57395 -12.47245 -11.92164 -11.89058 -11.65023 -11.35777 -11.14335 -10.98631 -10.93278 -10.62817 -10.44551 -10.10487 -9.91481 -9.69088 -9.40867 -9.14565 -9.01022 -8.19924 -7.93365 -7.20794 -6.93015 -6.09677 -4.37171 2.35621 2.84699 2.87407 3.13932 3.15905 3.18054 3.20719 3.28936 4.08259 4.13111 4.21629 4.37540 4.61054 4.67934 4.89858 4.97307 5.05586 5.15854 5.19596 5.24232 5.50704 5.58506 5.70601 5.77394 5.86000 6.00843 6.06786 6.10364 6.13172 6.35635 6.52617 6.76573 6.83383 6.87187 7.18422 7.23733 7.40759 7.63721 7.75273 7.83574 7.95631 8.18159 8.29385 8.63416 8.80443 9.08031 9.55131 10.28445 10.51504 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.013831 B = 0.003759 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.966935 B = 7447.635446 C = 9380.268830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.735 5.735 3 C 0.528 3.472 4 O -0.537 6.537 5 C -0.129 4.129 6 H 0.111 0.889 7 C -0.107 4.107 8 C 0.098 3.902 9 N -0.646 5.646 10 C 0.684 3.316 11 O -0.457 6.457 12 N -0.669 5.669 13 C 0.387 3.613 14 C -0.357 4.357 15 C -0.035 4.035 16 C -0.306 4.306 17 C 0.271 3.729 18 C -0.425 4.425 19 H 0.082 0.918 20 C 0.057 3.943 21 N -0.650 5.650 22 Si 0.894 3.106 23 H -0.272 1.272 24 H -0.279 1.279 25 H -0.264 1.264 26 N -0.472 5.472 27 C 0.148 3.852 28 H 0.075 0.925 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.405 0.595 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.395 0.605 37 H 0.090 0.910 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.271 0.729 41 H 0.063 0.937 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.441 4.399 10.612 15.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.386 5.386 3 C 0.314 3.686 4 O -0.414 6.414 5 C -0.151 4.151 6 H 0.129 0.871 7 C -0.146 4.146 8 C -0.026 4.026 9 N -0.391 5.391 10 C 0.385 3.615 11 O -0.321 6.321 12 N -0.317 5.317 13 C 0.147 3.853 14 C -0.383 4.383 15 C -0.060 4.060 16 C -0.329 4.329 17 C 0.146 3.854 18 C -0.456 4.456 19 H 0.100 0.900 20 C -0.172 4.172 21 N -0.269 5.269 22 Si 0.719 3.281 23 H -0.197 1.197 24 H -0.204 1.204 25 H -0.188 1.188 26 N -0.191 5.191 27 C 0.023 3.977 28 H 0.094 0.906 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.239 0.761 32 H 0.102 0.898 33 H 0.108 0.892 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.229 0.771 37 H 0.108 0.892 38 H 0.114 0.886 39 H 0.114 0.886 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -11.984 3.757 10.202 16.180 hybrid contribution 0.923 -0.085 -0.042 0.928 sum -11.061 3.671 10.160 15.461 Atomic orbital electron populations 1.21548 0.79575 1.02322 1.02295 1.45849 1.07892 1.08962 1.75944 1.20323 0.89476 0.83565 0.75265 1.90699 1.70235 1.31329 1.49098 1.22617 0.91503 1.00200 1.00790 0.87135 1.22478 0.95179 0.94803 1.02092 1.21970 0.97639 0.88244 0.94724 1.47792 1.11804 1.26164 1.53306 1.15961 0.79720 0.84611 0.81242 1.91396 1.79526 1.19509 1.41645 1.42543 1.11901 1.31886 1.45419 1.18334 0.84813 0.91875 0.90276 1.20430 0.97528 1.05058 1.15310 1.20545 0.96053 0.94991 0.94385 1.21622 1.01053 1.00325 1.09938 1.18387 0.86228 0.92079 0.88678 1.19572 1.00462 1.03485 1.22053 0.89984 1.26190 0.96410 0.98845 0.95777 1.70351 1.02728 1.32115 1.21684 0.86544 0.78149 0.82673 0.80742 1.19701 1.20380 1.18773 1.68678 1.30076 1.09589 1.10768 1.21738 0.83074 0.99086 0.93792 0.90578 0.92278 0.92140 0.76056 0.89833 0.89245 0.91881 0.91677 0.77145 0.89155 0.88593 0.88571 0.91713 0.91843 0.89786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.62 10.70 59.85 0.64 1.26 16 2 N -0.73 -6.11 5.71 -67.07 -0.38 -6.50 16 3 C 0.53 5.80 7.15 -10.99 -0.08 5.72 16 4 O -0.54 -7.74 15.72 5.56 0.09 -7.66 16 5 C -0.13 -1.30 3.45 -89.50 -0.31 -1.61 16 6 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 7 C -0.11 -1.07 6.07 -24.89 -0.15 -1.22 16 8 C 0.10 1.11 6.16 -3.07 -0.02 1.09 16 9 N -0.65 -10.02 3.32 -176.10 -0.59 -10.60 16 10 C 0.68 14.35 8.45 -86.92 -0.73 13.62 16 11 O -0.46 -11.75 12.36 5.30 0.07 -11.68 16 12 N -0.67 -13.65 5.34 -15.79 -0.08 -13.73 16 13 C 0.39 9.59 7.43 -155.00 -1.15 8.43 16 14 C -0.36 -8.11 9.95 -38.89 -0.39 -8.50 16 15 C -0.04 -0.81 10.15 -39.39 -0.40 -1.21 16 16 C -0.31 -7.77 9.83 -38.66 -0.38 -8.15 16 17 C 0.27 7.70 6.55 -85.00 -0.56 7.14 16 18 C -0.43 -11.77 9.14 -37.74 -0.34 -12.12 16 19 H 0.08 2.12 7.85 -52.49 -0.41 1.71 16 20 C 0.06 1.51 5.50 -17.34 -0.10 1.42 16 21 N -0.65 -18.12 8.98 55.55 0.50 -17.62 16 22 Si 0.89 19.27 29.56 -169.99 -5.02 14.25 16 23 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 24 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 25 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 26 N -0.47 -13.44 5.74 -10.26 -0.06 -13.50 16 27 C 0.15 1.94 6.37 -2.41 -0.02 1.92 16 28 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.41 2.49 8.83 -40.82 -0.36 2.13 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.09 1.00 7.39 -51.93 -0.38 0.62 16 34 H 0.06 0.63 8.12 -51.93 -0.42 0.21 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.40 6.38 7.68 -40.82 -0.31 6.06 16 37 H 0.09 1.75 8.06 -52.48 -0.42 1.33 16 38 H 0.10 1.86 8.06 -52.49 -0.42 1.43 16 39 H 0.10 2.26 8.06 -52.48 -0.42 1.84 16 40 H 0.27 7.06 8.29 -40.82 -0.34 6.72 16 41 H 0.06 0.88 8.04 -51.93 -0.42 0.47 16 42 H 0.08 1.14 8.03 -51.93 -0.42 0.72 16 LS Contribution 352.21 15.07 5.31 5.31 Total: -1.00 -35.86 352.21 -9.82 -45.68 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -5.67 Total: 8.25 kcal Atomic # 6 Polarization: 11.78 SS G_CDS: -3.98 Total: 7.80 kcal Atomic # 7 Polarization: -61.34 SS G_CDS: -0.61 Total: -61.95 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: 0.15 Total: -19.34 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -5.02 Total: 14.25 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -35.86 -9.82 -45.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881143874.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.659 kcal (2) G-P(sol) polarization free energy of solvation -35.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds