Wall clock time and date at job start Tue Mar 31 2020 05:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34774 * 119.99956 * 2 1 4 4 O 1.21279 * 120.00213 * 359.97438 * 3 2 1 5 5 C 1.50702 * 120.00058 * 180.02562 * 3 2 1 6 6 H 1.08999 * 110.88329 * 303.87336 * 5 3 2 7 7 C 1.55161 * 111.00437 * 179.97438 * 5 3 2 8 8 C 1.54324 * 102.93933 * 206.38389 * 7 5 3 9 9 N 1.47017 * 107.27404 * 22.18928 * 8 7 5 10 10 C 1.34772 * 125.64993 * 181.02195 * 9 8 7 11 11 O 1.21576 * 120.00545 * 180.02562 * 10 9 8 12 12 N 1.34777 * 120.00090 * 0.02958 * 10 9 8 13 13 C 1.39249 * 120.00357 * 185.16002 * 12 10 9 14 14 C 1.39680 * 119.57502 * 174.65393 * 13 12 10 15 15 C 1.38650 * 119.49609 * 179.97438 * 14 13 12 16 16 C 1.38351 * 118.66646 * 0.27117 * 15 14 13 17 17 C 1.40574 * 119.13321 * 359.43863 * 16 15 14 18 18 C 1.41331 * 119.78787 * 180.31872 * 17 16 15 19 19 H 1.07995 * 120.00272 * 0.25634 * 18 17 16 20 20 C 1.40030 * 120.00053 * 180.25440 * 18 17 16 21 21 N 1.30749 * 119.99947 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00321 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47125 * 89.99909 * 22 20 18 24 24 H 1.48502 * 109.47235 * 209.99853 * 22 20 18 25 25 H 1.48502 * 109.46710 * 329.99911 * 22 20 18 26 26 N 1.31900 * 119.57170 * 354.62116 * 13 12 10 27 27 C 1.47425 * 108.70440 * 1.28909 * 9 8 7 28 28 H 1.09001 * 109.46606 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47256 * 300.00302 * 1 2 3 30 30 H 1.09002 * 109.46642 * 60.00934 * 1 2 3 31 31 H 0.97005 * 120.00362 * 179.97438 * 2 1 3 32 32 H 1.08996 * 110.72253 * 88.01874 * 7 5 3 33 33 H 1.09003 * 110.87086 * 324.81440 * 7 5 3 34 34 H 1.09000 * 109.87949 * 262.77260 * 8 7 5 35 35 H 1.09001 * 110.01042 * 141.68102 * 8 7 5 36 36 H 0.97004 * 119.99758 * 5.15013 * 12 10 9 37 37 H 1.08003 * 120.25623 * 0.02562 * 14 13 12 38 38 H 1.07999 * 120.66742 * 179.97438 * 15 14 13 39 39 H 1.08004 * 120.43463 * 179.70554 * 16 15 14 40 40 H 0.96997 * 120.00041 * 179.97438 * 21 20 18 41 41 H 1.09000 * 110.36497 * 94.47821 * 27 9 8 42 42 H 1.09001 * 110.37068 * 216.80733 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2175 -0.0005 5 6 3.6459 1.1672 -0.0006 6 1 4.0348 0.5994 0.8447 7 6 4.2020 2.6157 -0.0011 8 6 5.5835 2.4552 -0.6700 9 7 5.5435 1.2180 -1.4631 10 6 6.5641 0.7141 -2.1847 11 8 6.4173 -0.3210 -2.8052 12 7 7.7478 1.3577 -2.2184 13 6 8.7675 0.8971 -3.0474 14 6 9.9493 1.6330 -3.1606 15 6 10.9637 1.1726 -3.9861 16 6 10.7694 -0.0076 -4.6814 17 6 9.5598 -0.7056 -4.5204 18 6 9.3494 -1.9161 -5.2188 19 1 10.1182 -2.3042 -5.8705 20 6 8.1441 -2.6123 -5.0658 21 7 7.2136 -2.1427 -4.2765 22 14 7.8656 -4.2119 -5.9895 23 1 8.3405 -5.3502 -5.1624 24 1 6.4167 -4.3752 -6.2710 25 1 8.6183 -4.1819 -7.2693 26 7 8.6050 -0.2287 -3.7151 27 6 4.1999 0.6231 -1.3435 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 1.9501 -0.8401 0.0004 32 1 4.3078 2.9886 1.0176 33 1 3.5639 3.2765 -0.5879 34 1 6.3584 2.3815 0.0930 35 1 5.7840 3.3064 -1.3207 36 1 7.8894 2.1419 -1.6652 37 1 10.0724 2.5532 -2.6087 38 1 11.8851 1.7267 -4.0880 39 1 11.5387 -0.3899 -5.3360 40 1 6.3785 -2.6247 -4.1708 41 1 3.5690 0.9412 -2.1735 42 1 4.2678 -0.4644 -1.3126 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881143874.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:04 Heat of formation + Delta-G solvation = -19.261574 kcal Electronic energy + Delta-G solvation = -26567.268527 eV Core-core repulsion = 22740.547308 eV Total energy + Delta-G solvation = -3826.721219 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.57317 -40.77472 -39.62537 -37.92833 -35.90369 -35.64787 -34.84709 -32.82261 -32.15675 -30.67891 -30.34351 -27.78108 -27.32558 -25.24038 -23.47696 -22.96551 -22.88177 -21.10548 -20.65918 -19.77828 -18.79772 -18.46311 -17.92921 -16.91480 -16.71205 -16.43316 -16.33169 -16.24146 -15.73867 -15.52214 -15.43198 -14.74265 -14.51093 -14.47922 -14.33184 -13.86556 -13.70109 -13.65132 -13.39621 -13.12936 -12.86766 -12.70919 -12.59774 -12.53099 -12.29524 -12.25987 -11.83709 -11.75246 -11.50879 -11.05664 -10.86135 -10.84468 -10.16264 -9.87899 -9.51064 -9.10852 -8.77158 -8.00675 -6.39239 0.97730 1.29574 1.40831 1.41072 1.52793 1.55365 1.70836 2.26111 2.28473 2.52317 3.04530 3.08832 3.38797 3.53239 3.85763 4.08905 4.16282 4.24187 4.30391 4.36680 4.47589 4.59617 4.62181 4.71333 4.77014 4.83204 4.85155 4.93933 4.98444 5.00192 5.07453 5.18036 5.29444 5.39954 5.42579 5.69612 5.86311 5.94765 6.06315 6.28875 6.41777 6.46842 6.84067 7.06730 7.14135 7.17100 7.95179 8.38962 8.60422 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.013831 B = 0.003759 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.966935 B = 7447.635446 C = 9380.268830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.725 5.725 3 C 0.526 3.474 4 O -0.574 6.574 5 C -0.113 4.113 6 H 0.135 0.865 7 C -0.100 4.100 8 C 0.094 3.906 9 N -0.642 5.642 10 C 0.677 3.323 11 O -0.511 6.511 12 N -0.658 5.658 13 C 0.365 3.635 14 C -0.346 4.346 15 C -0.033 4.033 16 C -0.330 4.330 17 C 0.237 3.763 18 C -0.466 4.466 19 H 0.085 0.915 20 C 0.011 3.989 21 N -0.686 5.686 22 Si 0.974 3.026 23 H -0.265 1.265 24 H -0.274 1.274 25 H -0.257 1.257 26 N -0.508 5.508 27 C 0.146 3.854 28 H 0.107 0.893 29 H 0.056 0.944 30 H 0.047 0.953 31 H 0.417 0.583 32 H 0.110 0.890 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.071 0.929 36 H 0.415 0.585 37 H 0.131 0.869 38 H 0.138 0.862 39 H 0.105 0.895 40 H 0.269 0.731 41 H 0.050 0.950 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.346 5.128 12.060 16.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.377 5.377 3 C 0.312 3.688 4 O -0.454 6.454 5 C -0.135 4.135 6 H 0.153 0.847 7 C -0.138 4.138 8 C -0.028 4.028 9 N -0.384 5.384 10 C 0.377 3.623 11 O -0.379 6.379 12 N -0.308 5.308 13 C 0.125 3.875 14 C -0.371 4.371 15 C -0.057 4.057 16 C -0.353 4.353 17 C 0.111 3.889 18 C -0.497 4.497 19 H 0.103 0.897 20 C -0.215 4.215 21 N -0.305 5.305 22 Si 0.795 3.205 23 H -0.189 1.189 24 H -0.199 1.199 25 H -0.181 1.181 26 N -0.227 5.227 27 C 0.022 3.978 28 H 0.125 0.875 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.253 0.747 32 H 0.129 0.871 33 H 0.095 0.905 34 H 0.104 0.896 35 H 0.090 0.910 36 H 0.253 0.747 37 H 0.149 0.851 38 H 0.156 0.844 39 H 0.123 0.877 40 H 0.080 0.920 41 H 0.069 0.931 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -11.904 4.529 11.710 17.301 hybrid contribution 0.898 -0.142 -0.398 0.992 sum -11.006 4.387 11.312 16.381 Atomic orbital electron populations 1.21690 0.78665 1.04188 1.01577 1.45864 1.08637 1.08823 1.74329 1.20434 0.89745 0.83666 0.74914 1.90687 1.70887 1.32689 1.51129 1.22534 0.90959 1.00488 0.99512 0.84692 1.22456 0.93775 0.94364 1.03181 1.22245 0.99323 0.86345 0.94898 1.47663 1.11155 1.27343 1.52285 1.16188 0.80509 0.84249 0.81318 1.91378 1.80615 1.21908 1.44004 1.42378 1.11148 1.32333 1.44990 1.18830 0.86563 0.91589 0.90504 1.20904 0.96255 1.05686 1.14278 1.21026 0.97608 0.94102 0.92985 1.21809 1.00611 1.01632 1.11263 1.18885 0.87548 0.93060 0.89382 1.19896 1.01652 1.04629 1.23509 0.89656 1.27038 0.95661 1.02309 0.96493 1.70558 1.02980 1.33622 1.23314 0.85349 0.78053 0.77801 0.79332 1.18944 1.19885 1.18088 1.68642 1.30899 1.11431 1.11724 1.21796 0.81928 0.98774 0.95343 0.87474 0.92478 0.93375 0.74684 0.87143 0.90546 0.89650 0.91019 0.74745 0.85086 0.84409 0.87729 0.91995 0.93135 0.90545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.07 10.70 127.77 1.37 2.43 16 2 N -0.73 -11.08 5.71 -484.51 -2.77 -13.85 16 3 C 0.53 10.94 7.15 87.66 0.63 11.57 16 4 O -0.57 -16.16 15.72 -3.03 -0.05 -16.21 16 5 C -0.11 -2.07 3.45 -10.07 -0.03 -2.11 16 6 H 0.14 1.87 8.14 -2.39 -0.02 1.85 16 7 C -0.10 -1.75 6.07 31.78 0.19 -1.56 16 8 C 0.09 1.91 6.16 86.73 0.53 2.45 16 9 N -0.64 -19.47 3.32 -829.34 -2.76 -22.22 16 10 C 0.68 28.66 8.45 179.06 1.51 30.17 16 11 O -0.51 -27.31 12.36 -3.95 -0.05 -27.36 16 12 N -0.66 -26.36 5.34 -322.13 -1.72 -28.08 16 13 C 0.36 18.02 7.43 133.26 0.99 19.01 16 14 C -0.35 -14.90 9.95 22.72 0.23 -14.68 16 15 C -0.03 -1.45 10.15 22.40 0.23 -1.22 16 16 C -0.33 -16.85 9.83 22.87 0.22 -16.62 16 17 C 0.24 13.87 6.55 40.19 0.26 14.13 16 18 C -0.47 -26.84 9.14 23.47 0.21 -26.63 16 19 H 0.09 4.60 7.85 -2.91 -0.02 4.58 16 20 C 0.01 0.58 5.50 85.29 0.47 1.05 16 21 N -0.69 -39.93 8.98 21.84 0.20 -39.73 16 22 Si 0.97 40.88 29.56 68.60 2.03 42.91 16 23 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 24 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 25 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 26 N -0.51 -29.71 5.74 -186.37 -1.07 -30.78 16 27 C 0.15 3.79 6.37 86.93 0.55 4.35 16 28 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.42 4.44 8.83 -92.70 -0.82 3.62 16 32 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.08 1.60 7.39 -2.39 -0.02 1.58 16 34 H 0.09 1.41 8.12 -2.39 -0.02 1.39 16 35 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.42 12.49 7.68 -92.70 -0.71 11.78 16 37 H 0.13 4.51 8.06 -2.91 -0.02 4.49 16 38 H 0.14 4.80 8.06 -2.91 -0.02 4.78 16 39 H 0.10 4.97 8.06 -2.91 -0.02 4.94 16 40 H 0.27 14.73 8.29 -92.71 -0.77 13.96 16 41 H 0.05 1.44 8.04 -2.39 -0.02 1.42 16 42 H 0.08 2.11 8.03 -2.39 -0.02 2.09 16 Total: -1.00 -82.32 352.21 0.72 -81.61 By element: Atomic # 1 Polarization: 31.84 SS G_CDS: -0.46 Total: 31.38 kcal Atomic # 6 Polarization: 14.97 SS G_CDS: 7.37 Total: 22.34 kcal Atomic # 7 Polarization: -126.54 SS G_CDS: -8.12 Total: -134.66 kcal Atomic # 8 Polarization: -43.47 SS G_CDS: -0.10 Total: -43.57 kcal Atomic # 14 Polarization: 40.88 SS G_CDS: 2.03 Total: 42.91 kcal Total: -82.32 0.72 -81.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881143874.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.345 kcal (2) G-P(sol) polarization free energy of solvation -82.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds