Wall clock time and date at job start Tue Mar 31 2020 04:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.46986 * 2 1 4 4 H 1.08997 * 109.57129 * 54.76333 * 3 2 1 5 5 C 1.50446 * 109.56631 * 175.00121 * 3 2 1 6 6 O 1.21279 * 118.48494 * 287.13159 * 5 3 2 7 7 N 1.33381 * 123.02120 * 107.11069 * 5 3 2 8 8 C 1.45648 * 124.58974 * 4.58534 * 7 5 3 9 9 C 1.53174 * 110.66526 * 337.66969 * 8 7 5 10 10 N 1.47052 * 109.56749 * 294.40638 * 3 2 1 11 11 C 1.34772 * 121.35439 * 102.89661 * 10 3 2 12 12 O 1.21572 * 120.00109 * 174.92001 * 11 10 3 13 13 N 1.34778 * 119.99779 * 354.92082 * 11 10 3 14 14 C 1.39255 * 119.99539 * 183.69443 * 13 11 10 15 15 C 1.39675 * 119.57563 * 339.02533 * 14 13 11 16 16 C 1.38649 * 119.49455 * 179.75229 * 15 14 13 17 17 C 1.38361 * 118.66726 * 0.51165 * 16 15 14 18 18 C 1.40564 * 119.13047 * 359.73545 * 17 16 15 19 19 C 1.41338 * 119.78452 * 179.97438 * 18 17 16 20 20 H 1.07994 * 120.00486 * 354.89398 * 19 18 17 21 21 C 1.40033 * 119.99745 * 174.89149 * 19 18 17 22 22 N 1.30738 * 120.00238 * 5.12670 * 21 19 18 23 23 Si 1.86799 * 119.99762 * 185.12715 * 21 19 18 24 24 H 1.48495 * 109.47035 * 95.00005 * 23 21 19 25 25 H 1.48500 * 109.46946 * 214.99822 * 23 21 19 26 26 H 1.48503 * 109.47379 * 334.99696 * 23 21 19 27 27 N 1.31905 * 119.56941 * 159.30425 * 14 13 11 28 28 H 1.09005 * 109.47396 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46949 * 299.99876 * 1 2 3 30 30 H 1.08998 * 109.47069 * 59.99982 * 1 2 3 31 31 H 1.09002 * 109.46974 * 239.99664 * 2 1 3 32 32 H 1.08998 * 109.47069 * 120.00018 * 2 1 3 33 33 H 0.97002 * 117.70419 * 184.29151 * 7 5 3 34 34 H 1.08999 * 109.21626 * 98.17115 * 8 7 5 35 35 H 1.09003 * 109.21149 * 217.50187 * 8 7 5 36 36 H 1.09006 * 109.90686 * 287.35008 * 9 8 7 37 37 H 1.08998 * 109.68515 * 166.64411 * 9 8 7 38 38 H 0.96999 * 120.00290 * 3.69242 * 13 11 10 39 39 H 1.08001 * 120.25473 * 0.02562 * 15 14 13 40 40 H 1.07999 * 120.66773 * 180.24700 * 16 15 14 41 41 H 1.07995 * 120.42882 * 179.70528 * 17 16 15 42 42 H 0.96996 * 120.00670 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6030 1.9842 0.8388 5 6 3.5393 1.4468 0.1235 6 8 4.0323 1.1642 1.1950 7 7 4.3514 1.7467 -0.8912 8 6 3.9047 2.1956 -2.2028 9 6 2.4570 1.7649 -2.4575 10 7 1.6643 2.0976 -1.2618 11 6 0.6362 2.9669 -1.3216 12 8 0.4045 3.5642 -2.3548 13 7 -0.1351 3.1741 -0.2359 14 6 -1.2433 4.0132 -0.3191 15 6 -1.3152 4.9610 -1.3426 16 6 -2.4217 5.7921 -1.4268 17 6 -3.4227 5.6626 -0.4805 18 6 -3.2893 4.6930 0.5284 19 6 -4.3033 4.5492 1.5024 20 1 -5.1365 5.2359 1.5200 21 6 -4.2275 3.5160 2.4446 22 7 -3.1713 2.7466 2.4877 23 14 -5.6355 3.2371 3.6401 24 1 -6.5465 2.1972 3.0979 25 1 -5.0932 2.7874 4.9473 26 1 -6.3862 4.5050 3.8254 27 7 -2.2090 3.9065 0.5731 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 5.3066 1.6640 -0.7440 34 1 3.9734 3.2823 -2.2526 35 1 4.5470 1.7608 -2.9687 36 1 2.4158 0.6909 -2.6389 37 1 2.0615 2.2992 -3.3213 38 1 0.0817 2.7387 0.6033 39 1 -0.5169 5.0427 -2.0655 40 1 -2.4987 6.5288 -2.2128 41 1 -4.2949 6.2985 -0.5164 42 1 -3.1189 2.0308 3.1400 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881150661.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:29:00 Heat of formation + Delta-G solvation = -3.063271 kcal Electronic energy + Delta-G solvation = -27410.444454 eV Core-core repulsion = 23584.425646 eV Total energy + Delta-G solvation = -3826.018808 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.18525 -39.62590 -37.97068 -36.55426 -35.47222 -34.27224 -33.21003 -32.42925 -30.42189 -29.86723 -28.96024 -27.16322 -25.44568 -24.18755 -22.34965 -21.90906 -21.57498 -20.44601 -18.75996 -18.67183 -17.57758 -17.10117 -16.92404 -16.19367 -15.80812 -15.33905 -15.03425 -14.73629 -14.63459 -14.35861 -14.32888 -14.01112 -13.53665 -13.06049 -12.90181 -12.73309 -12.37666 -12.26733 -12.12958 -11.98971 -11.73377 -11.44783 -11.25302 -11.14061 -10.97301 -10.93304 -10.64027 -10.33570 -10.09294 -9.89949 -9.41839 -9.28893 -9.06073 -8.75293 -8.03232 -7.67907 -7.10084 -6.41888 -4.50038 2.32400 2.44663 2.65398 2.93285 3.02089 3.09583 3.12812 3.24654 3.54451 3.95252 3.99093 4.15520 4.48758 4.70946 4.74829 4.78516 4.86316 5.00081 5.29706 5.34600 5.46599 5.51514 5.71059 5.89979 5.93962 6.04697 6.10383 6.15532 6.37627 6.43843 6.48098 6.66777 6.80483 6.91466 6.94187 6.99044 7.16932 7.48257 7.56901 7.87817 7.90612 8.01047 8.14309 8.34880 8.69270 8.81166 8.98688 10.04288 10.31237 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.015983 B = 0.004142 C = 0.003506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.426199 B = 6759.145352 C = 7984.057149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C 0.128 3.872 4 H 0.119 0.881 5 C 0.521 3.479 6 O -0.544 6.544 7 N -0.716 5.716 8 C 0.095 3.905 9 C 0.114 3.886 10 N -0.631 5.631 11 C 0.718 3.282 12 O -0.562 6.562 13 N -0.655 5.655 14 C 0.369 3.631 15 C -0.314 4.314 16 C -0.050 4.050 17 C -0.289 4.289 18 C 0.280 3.720 19 C -0.436 4.436 20 H 0.085 0.915 21 C 0.073 3.927 22 N -0.722 5.722 23 Si 0.906 3.094 24 H -0.271 1.271 25 H -0.277 1.277 26 H -0.262 1.262 27 N -0.506 5.506 28 H 0.060 0.940 29 H 0.068 0.932 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.084 0.916 33 H 0.399 0.601 34 H 0.073 0.927 35 H 0.090 0.910 36 H 0.077 0.923 37 H 0.116 0.884 38 H 0.402 0.598 39 H 0.138 0.862 40 H 0.098 0.902 41 H 0.099 0.901 42 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.233 -6.254 -6.461 15.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C 0.020 3.980 4 H 0.137 0.863 5 C 0.307 3.693 6 O -0.421 6.421 7 N -0.368 5.368 8 C -0.030 4.030 9 C -0.009 4.009 10 N -0.371 5.371 11 C 0.420 3.580 12 O -0.438 6.438 13 N -0.303 5.303 14 C 0.134 3.866 15 C -0.339 4.339 16 C -0.075 4.075 17 C -0.312 4.312 18 C 0.154 3.846 19 C -0.468 4.468 20 H 0.103 0.897 21 C -0.152 4.152 22 N -0.344 5.344 23 Si 0.730 3.270 24 H -0.196 1.196 25 H -0.202 1.202 26 H -0.186 1.186 27 N -0.225 5.225 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.103 0.897 33 H 0.235 0.765 34 H 0.092 0.908 35 H 0.108 0.892 36 H 0.096 0.904 37 H 0.134 0.866 38 H 0.239 0.761 39 H 0.156 0.844 40 H 0.116 0.884 41 H 0.117 0.883 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 12.209 -6.731 -5.915 15.144 hybrid contribution -0.195 0.170 0.314 0.407 sum 12.014 -6.561 -5.601 14.790 Atomic orbital electron populations 1.21782 0.93349 1.02407 1.03456 1.21816 0.97932 0.93191 1.03304 1.21487 0.90922 0.96895 0.88647 0.86332 1.20187 0.89610 0.75989 0.83542 1.90794 1.76053 1.49057 1.26174 1.45352 1.10371 1.68182 1.12902 1.21876 0.96405 1.00670 0.84099 1.21826 0.88509 1.01401 0.89206 1.47462 1.33877 1.46545 1.09244 1.15553 0.79047 0.79530 0.83912 1.90804 1.71883 1.50531 1.30592 1.42426 1.26840 1.48820 1.12168 1.18224 0.86765 0.88215 0.93358 1.21798 1.03445 1.03049 1.05601 1.20826 0.93598 0.96543 0.96524 1.21716 1.01511 1.06751 1.01208 1.18154 0.89120 0.86721 0.90647 1.19559 1.05732 1.11461 1.10027 0.89706 1.26012 0.96296 0.95317 0.97576 1.70103 1.25124 1.11600 1.27581 0.86343 0.81476 0.79629 0.79526 1.19579 1.20199 1.18556 1.68001 1.01093 1.27710 1.25677 0.92102 0.91272 0.92293 0.91276 0.89740 0.76539 0.90831 0.89228 0.90436 0.86588 0.76092 0.84436 0.88394 0.88295 0.91865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.07 37.16 0.34 -1.67 16 2 C -0.12 -1.39 5.50 -26.73 -0.15 -1.53 16 3 C 0.13 1.61 2.30 -68.91 -0.16 1.45 16 4 H 0.12 1.64 6.08 -51.93 -0.32 1.32 16 5 C 0.52 6.54 7.10 -11.73 -0.08 6.45 16 6 O -0.54 -8.61 17.80 5.56 0.10 -8.51 16 7 N -0.72 -6.56 5.42 -61.22 -0.33 -6.90 16 8 C 0.09 0.69 7.34 -4.41 -0.03 0.66 16 9 C 0.11 1.08 6.40 -3.53 -0.02 1.06 16 10 N -0.63 -8.31 2.27 -172.13 -0.39 -8.70 16 11 C 0.72 12.83 7.28 -86.92 -0.63 12.19 16 12 O -0.56 -11.47 12.50 5.30 0.07 -11.40 16 13 N -0.65 -13.08 5.02 -15.79 -0.08 -13.16 16 14 C 0.37 9.03 7.51 -154.99 -1.16 7.86 16 15 C -0.31 -7.58 8.89 -38.89 -0.35 -7.93 16 16 C -0.05 -1.18 10.15 -39.38 -0.40 -1.58 16 17 C -0.29 -7.20 9.83 -38.66 -0.38 -7.58 16 18 C 0.28 7.63 6.55 -85.00 -0.56 7.07 16 19 C -0.44 -11.53 9.13 -37.73 -0.34 -11.87 16 20 H 0.08 2.11 7.85 -52.49 -0.41 1.70 16 21 C 0.07 1.81 5.49 -17.34 -0.10 1.71 16 22 N -0.72 -18.49 11.48 55.55 0.64 -17.85 16 23 Si 0.91 18.38 29.56 -169.99 -5.03 13.36 16 24 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 25 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 26 H -0.26 -5.24 7.11 56.52 0.40 -4.83 16 27 N -0.51 -13.58 7.91 -10.26 -0.08 -13.66 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.07 1.02 7.77 -51.93 -0.40 0.62 16 30 H 0.06 0.89 7.07 -51.93 -0.37 0.53 16 31 H 0.07 0.68 7.34 -51.93 -0.38 0.30 16 32 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.40 3.04 8.80 -40.82 -0.36 2.68 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.08 0.60 7.39 -51.93 -0.38 0.22 16 37 H 0.12 1.18 7.08 -51.93 -0.37 0.81 16 38 H 0.40 7.51 5.82 -40.82 -0.24 7.27 16 39 H 0.14 3.27 5.17 -52.92 -0.27 3.00 16 40 H 0.10 1.99 8.06 -52.49 -0.42 1.56 16 41 H 0.10 2.27 8.06 -52.49 -0.42 1.85 16 42 H 0.27 6.28 8.29 -40.82 -0.34 5.94 16 LS Contribution 343.16 15.07 5.17 5.17 Total: -1.00 -32.52 343.16 -9.13 -41.65 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: -5.17 Total: 13.69 kcal Atomic # 6 Polarization: 10.33 SS G_CDS: -4.03 Total: 6.31 kcal Atomic # 7 Polarization: -60.02 SS G_CDS: -0.25 Total: -60.27 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: 0.17 Total: -19.91 kcal Atomic # 14 Polarization: 18.38 SS G_CDS: -5.03 Total: 13.36 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.52 -9.13 -41.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881150661.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.584 kcal (2) G-P(sol) polarization free energy of solvation -32.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds