Wall clock time and date at job start Tue Mar 31 2020 04:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.46986 * 2 1 4 4 H 1.08997 * 109.57129 * 54.76333 * 3 2 1 5 5 C 1.50446 * 109.56631 * 175.00121 * 3 2 1 6 6 O 1.21279 * 118.48494 * 287.13159 * 5 3 2 7 7 N 1.33381 * 123.02120 * 107.11069 * 5 3 2 8 8 C 1.45648 * 124.58974 * 4.58534 * 7 5 3 9 9 C 1.53174 * 110.66526 * 337.66969 * 8 7 5 10 10 N 1.47052 * 109.56749 * 294.40638 * 3 2 1 11 11 C 1.34772 * 121.35439 * 102.89661 * 10 3 2 12 12 O 1.21572 * 120.00109 * 174.92001 * 11 10 3 13 13 N 1.34778 * 119.99779 * 354.92082 * 11 10 3 14 14 C 1.39255 * 119.99539 * 183.69443 * 13 11 10 15 15 C 1.39675 * 119.57563 * 339.02533 * 14 13 11 16 16 C 1.38649 * 119.49455 * 179.75229 * 15 14 13 17 17 C 1.38361 * 118.66726 * 0.51165 * 16 15 14 18 18 C 1.40564 * 119.13047 * 359.73545 * 17 16 15 19 19 C 1.41338 * 119.78452 * 179.97438 * 18 17 16 20 20 H 1.07994 * 120.00486 * 354.89398 * 19 18 17 21 21 C 1.40033 * 119.99745 * 174.89149 * 19 18 17 22 22 N 1.30738 * 120.00238 * 5.12670 * 21 19 18 23 23 Si 1.86799 * 119.99762 * 185.12715 * 21 19 18 24 24 H 1.48495 * 109.47035 * 95.00005 * 23 21 19 25 25 H 1.48500 * 109.46946 * 214.99822 * 23 21 19 26 26 H 1.48503 * 109.47379 * 334.99696 * 23 21 19 27 27 N 1.31905 * 119.56941 * 159.30425 * 14 13 11 28 28 H 1.09005 * 109.47396 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46949 * 299.99876 * 1 2 3 30 30 H 1.08998 * 109.47069 * 59.99982 * 1 2 3 31 31 H 1.09002 * 109.46974 * 239.99664 * 2 1 3 32 32 H 1.08998 * 109.47069 * 120.00018 * 2 1 3 33 33 H 0.97002 * 117.70419 * 184.29151 * 7 5 3 34 34 H 1.08999 * 109.21626 * 98.17115 * 8 7 5 35 35 H 1.09003 * 109.21149 * 217.50187 * 8 7 5 36 36 H 1.09006 * 109.90686 * 287.35008 * 9 8 7 37 37 H 1.08998 * 109.68515 * 166.64411 * 9 8 7 38 38 H 0.96999 * 120.00290 * 3.69242 * 13 11 10 39 39 H 1.08001 * 120.25473 * 0.02562 * 15 14 13 40 40 H 1.07999 * 120.66773 * 180.24700 * 16 15 14 41 41 H 1.07995 * 120.42882 * 179.70528 * 17 16 15 42 42 H 0.96996 * 120.00670 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6030 1.9842 0.8388 5 6 3.5393 1.4468 0.1235 6 8 4.0323 1.1642 1.1950 7 7 4.3514 1.7467 -0.8912 8 6 3.9047 2.1956 -2.2028 9 6 2.4570 1.7649 -2.4575 10 7 1.6643 2.0976 -1.2618 11 6 0.6362 2.9669 -1.3216 12 8 0.4045 3.5642 -2.3548 13 7 -0.1351 3.1741 -0.2359 14 6 -1.2433 4.0132 -0.3191 15 6 -1.3152 4.9610 -1.3426 16 6 -2.4217 5.7921 -1.4268 17 6 -3.4227 5.6626 -0.4805 18 6 -3.2893 4.6930 0.5284 19 6 -4.3033 4.5492 1.5024 20 1 -5.1365 5.2359 1.5200 21 6 -4.2275 3.5160 2.4446 22 7 -3.1713 2.7466 2.4877 23 14 -5.6355 3.2371 3.6401 24 1 -6.5465 2.1972 3.0979 25 1 -5.0932 2.7874 4.9473 26 1 -6.3862 4.5050 3.8254 27 7 -2.2090 3.9065 0.5731 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 5.3066 1.6640 -0.7440 34 1 3.9734 3.2823 -2.2526 35 1 4.5470 1.7608 -2.9687 36 1 2.4158 0.6909 -2.6389 37 1 2.0615 2.2992 -3.3213 38 1 0.0817 2.7387 0.6033 39 1 -0.5169 5.0427 -2.0655 40 1 -2.4987 6.5288 -2.2128 41 1 -4.2949 6.2985 -0.5164 42 1 -3.1189 2.0308 3.1400 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881150661.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:28:58 Heat of formation + Delta-G solvation = -25.046819 kcal Electronic energy + Delta-G solvation = -27411.397732 eV Core-core repulsion = 23584.425646 eV Total energy + Delta-G solvation = -3826.972086 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 1.90 seconds Orbital eigenvalues (eV) -42.36300 -40.97352 -39.66099 -37.73753 -36.55175 -35.86138 -34.97757 -33.51271 -32.30974 -31.26827 -30.30026 -28.35001 -27.27662 -25.18808 -23.53799 -23.39305 -23.30769 -21.87539 -20.14698 -19.74464 -19.16878 -18.49703 -17.98746 -17.43326 -17.13054 -16.70816 -16.36499 -16.31611 -16.06788 -15.82291 -15.46216 -15.29687 -14.90148 -14.65148 -14.29833 -13.91184 -13.79402 -13.61093 -13.41085 -13.08118 -12.98003 -12.89536 -12.68035 -12.59872 -12.51684 -12.41328 -11.99481 -11.82834 -11.64654 -11.42089 -11.05120 -10.72965 -10.22780 -9.97699 -9.85717 -9.60423 -8.93925 -8.29050 -6.48308 0.82475 1.14024 1.25547 1.33540 1.43361 1.55003 1.56848 1.99888 2.14537 2.25125 2.58820 2.89641 3.24921 3.65037 3.75062 3.80895 3.93994 4.15216 4.24596 4.29903 4.34048 4.42350 4.60852 4.65618 4.72335 4.86971 4.90480 4.93698 4.95882 4.99035 5.01364 5.21158 5.26176 5.32374 5.50776 5.68615 5.72895 5.73894 6.00135 6.10914 6.16071 6.30022 6.64746 6.80777 6.98346 7.01558 7.37404 8.12342 8.46495 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.015983 B = 0.004142 C = 0.003506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.426199 B = 6759.145352 C = 7984.057149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.113 4.113 3 C 0.126 3.874 4 H 0.100 0.900 5 C 0.524 3.476 6 O -0.581 6.581 7 N -0.701 5.701 8 C 0.099 3.901 9 C 0.104 3.896 10 N -0.618 5.618 11 C 0.717 3.283 12 O -0.588 6.588 13 N -0.655 5.655 14 C 0.361 3.639 15 C -0.326 4.326 16 C -0.048 4.048 17 C -0.308 4.308 18 C 0.247 3.753 19 C -0.467 4.467 20 H 0.090 0.910 21 C 0.029 3.971 22 N -0.752 5.752 23 Si 0.985 3.015 24 H -0.266 1.266 25 H -0.269 1.269 26 H -0.256 1.256 27 N -0.532 5.532 28 H 0.075 0.925 29 H 0.044 0.956 30 H 0.036 0.964 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.411 0.589 34 H 0.070 0.930 35 H 0.138 0.862 36 H 0.104 0.896 37 H 0.111 0.889 38 H 0.405 0.595 39 H 0.143 0.857 40 H 0.131 0.869 41 H 0.112 0.888 42 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.293 -7.305 -7.194 16.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.151 4.151 3 C 0.019 3.981 4 H 0.118 0.882 5 C 0.309 3.691 6 O -0.461 6.461 7 N -0.352 5.352 8 C -0.026 4.026 9 C -0.018 4.018 10 N -0.357 5.357 11 C 0.419 3.581 12 O -0.467 6.467 13 N -0.303 5.303 14 C 0.125 3.875 15 C -0.351 4.351 16 C -0.073 4.073 17 C -0.331 4.331 18 C 0.120 3.880 19 C -0.498 4.498 20 H 0.109 0.891 21 C -0.193 4.193 22 N -0.374 5.374 23 Si 0.806 3.194 24 H -0.191 1.191 25 H -0.193 1.193 26 H -0.180 1.180 27 N -0.251 5.251 28 H 0.094 0.906 29 H 0.063 0.937 30 H 0.055 0.945 31 H 0.112 0.888 32 H 0.109 0.891 33 H 0.248 0.752 34 H 0.088 0.912 35 H 0.156 0.844 36 H 0.122 0.878 37 H 0.129 0.871 38 H 0.243 0.757 39 H 0.160 0.840 40 H 0.149 0.851 41 H 0.130 0.870 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 13.348 -7.797 -6.705 16.850 hybrid contribution -0.415 0.482 0.436 0.771 sum 12.933 -7.315 -6.269 16.127 Atomic orbital electron populations 1.21687 0.94890 1.02625 1.01073 1.21748 0.96218 0.92386 1.04770 1.21506 0.91514 0.97432 0.87641 0.88212 1.20010 0.89358 0.76038 0.83707 1.90785 1.76389 1.51215 1.27729 1.45289 1.10714 1.66398 1.12777 1.22038 0.95602 1.00855 0.84068 1.22239 0.89104 1.03062 0.87363 1.47458 1.32507 1.44945 1.10822 1.15645 0.79599 0.79971 0.82840 1.90759 1.72907 1.51833 1.31185 1.42378 1.26242 1.48534 1.13195 1.18560 0.87314 0.88689 0.92935 1.22031 1.04005 1.03285 1.05742 1.21190 0.92722 0.96645 0.96709 1.21889 1.02661 1.07046 1.01480 1.18660 0.89813 0.87710 0.91803 1.19924 1.06151 1.12717 1.11053 0.89148 1.26900 0.98982 0.94474 0.98973 1.70185 1.26910 1.11941 1.28342 0.85153 0.77745 0.79585 0.76961 1.19075 1.19324 1.17967 1.68024 1.01782 1.28464 1.26856 0.90565 0.93702 0.94529 0.88847 0.89106 0.75152 0.91151 0.84440 0.87773 0.87052 0.75690 0.83958 0.85136 0.86984 0.91129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.82 9.07 71.98 0.65 -3.17 16 2 C -0.11 -2.38 5.50 30.59 0.17 -2.21 16 3 C 0.13 3.10 2.30 44.06 0.10 3.20 16 4 H 0.10 2.85 6.08 -2.39 -0.01 2.84 16 5 C 0.52 12.33 7.10 87.79 0.62 12.96 16 6 O -0.58 -17.92 17.80 -3.03 -0.05 -17.97 16 7 N -0.70 -10.82 5.42 -466.77 -2.53 -13.35 16 8 C 0.10 1.08 7.34 86.60 0.64 1.71 16 9 C 0.10 1.70 6.40 86.29 0.55 2.25 16 10 N -0.62 -15.73 2.27 -816.77 -1.86 -17.58 16 11 C 0.72 25.86 7.28 179.06 1.30 27.16 16 12 O -0.59 -24.10 12.50 -3.94 -0.05 -24.15 16 13 N -0.66 -27.10 5.02 -322.13 -1.62 -28.71 16 14 C 0.36 18.23 7.51 133.26 1.00 19.23 16 15 C -0.33 -15.99 8.89 22.72 0.20 -15.79 16 16 C -0.05 -2.27 10.15 22.40 0.23 -2.04 16 17 C -0.31 -15.66 9.83 22.87 0.22 -15.43 16 18 C 0.25 13.87 6.55 40.19 0.26 14.13 16 19 C -0.47 -25.31 9.13 23.47 0.21 -25.10 16 20 H 0.09 4.59 7.85 -2.91 -0.02 4.57 16 21 C 0.03 1.45 5.49 85.29 0.47 1.92 16 22 N -0.75 -39.44 11.48 21.84 0.25 -39.19 16 23 Si 0.98 37.85 29.56 68.60 2.03 39.87 16 24 H -0.27 -9.94 7.11 99.48 0.71 -9.24 16 25 H -0.27 -9.87 7.11 99.48 0.71 -9.16 16 26 H -0.26 -9.51 7.11 99.48 0.71 -8.81 16 27 N -0.53 -29.62 7.91 -186.37 -1.47 -31.10 16 28 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 29 H 0.04 1.38 7.77 -2.39 -0.02 1.36 16 30 H 0.04 1.11 7.07 -2.39 -0.02 1.09 16 31 H 0.09 1.55 7.34 -2.39 -0.02 1.53 16 32 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.41 4.95 8.80 -92.71 -0.82 4.14 16 34 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.14 0.35 8.14 -2.39 -0.02 0.33 16 36 H 0.10 1.21 7.39 -2.38 -0.02 1.19 16 37 H 0.11 2.03 7.08 -2.39 -0.02 2.01 16 38 H 0.41 15.94 5.82 -92.71 -0.54 15.40 16 39 H 0.14 6.84 5.17 -9.77 -0.05 6.79 16 40 H 0.13 5.14 8.06 -2.91 -0.02 5.12 16 41 H 0.11 5.21 8.06 -2.91 -0.02 5.19 16 42 H 0.28 13.15 8.29 -92.71 -0.77 12.39 16 Total: -1.00 -73.19 343.16 1.03 -72.16 By element: Atomic # 1 Polarization: 41.50 SS G_CDS: -0.30 Total: 41.19 kcal Atomic # 6 Polarization: 12.19 SS G_CDS: 6.64 Total: 18.82 kcal Atomic # 7 Polarization: -122.71 SS G_CDS: -7.22 Total: -129.93 kcal Atomic # 8 Polarization: -42.02 SS G_CDS: -0.10 Total: -42.12 kcal Atomic # 14 Polarization: 37.85 SS G_CDS: 2.03 Total: 39.87 kcal Total: -73.19 1.03 -72.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881150661.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.113 kcal (2) G-P(sol) polarization free energy of solvation -73.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.91 seconds