Wall clock time and date at job start Tue Mar 31 2020 05:06:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.99984 * 2 1 4 4 C 1.54327 * 109.88262 * 238.90008 * 2 1 3 5 5 H 1.09003 * 110.71561 * 336.75553 * 4 2 1 6 6 N 1.46497 * 110.87058 * 99.95851 * 4 2 1 7 7 C 1.36932 * 120.00065 * 200.06439 * 6 4 2 8 8 H 1.08007 * 119.99746 * 0.02562 * 7 6 4 9 9 C 1.38816 * 120.00572 * 180.02562 * 7 6 4 10 10 N 1.31612 * 119.99321 * 359.97438 * 9 7 6 11 11 Si 1.86791 * 120.00378 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47249 * 90.00026 * 11 9 7 13 13 H 1.48500 * 109.47108 * 209.99884 * 11 9 7 14 14 H 1.48509 * 109.47284 * 330.00143 * 11 9 7 15 15 C 1.55158 * 102.93936 * 218.39212 * 4 2 1 16 16 C 1.54904 * 101.58342 * 35.50388 * 15 4 2 17 17 N 1.47020 * 109.87892 * 121.09244 * 2 1 3 18 18 C 1.34776 * 125.64967 * 298.62084 * 17 2 1 19 19 O 1.21538 * 120.00166 * 175.68256 * 18 17 2 20 20 C 1.48002 * 120.00146 * 355.68848 * 18 17 2 21 21 C 1.39863 * 120.46364 * 176.23196 * 20 18 17 22 22 C 1.38461 * 118.35758 * 179.97438 * 21 20 18 23 23 C 1.39295 * 119.18716 * 0.02562 * 22 21 20 24 24 C 1.48340 * 119.57079 * 179.97438 * 23 22 21 25 25 N 1.34776 * 120.00088 * 180.02562 * 24 23 22 26 26 O 1.21492 * 119.99595 * 359.97438 * 24 23 22 27 27 N 1.32721 * 120.86106 * 359.97438 * 23 22 21 28 28 C 1.31419 * 121.79806 * 359.74712 * 27 23 22 29 29 H 1.08996 * 109.47263 * 281.47254 * 1 2 3 30 30 H 1.09003 * 109.46785 * 41.46617 * 1 2 3 31 31 H 1.08993 * 109.47060 * 161.46367 * 1 2 3 32 32 H 0.97001 * 120.00419 * 20.06363 * 6 4 2 33 33 H 0.97006 * 120.00284 * 180.02562 * 10 9 7 34 34 H 1.08996 * 111.00477 * 277.42622 * 15 4 2 35 35 H 1.09008 * 111.00052 * 153.57616 * 15 4 2 36 36 H 1.08998 * 110.36787 * 204.15335 * 16 15 4 37 37 H 1.09000 * 110.46426 * 81.87746 * 16 15 4 38 38 H 1.07999 * 120.82416 * 359.97438 * 21 20 18 39 39 H 1.08001 * 120.40382 * 180.02562 * 22 21 20 40 40 H 0.97003 * 120.00233 * 359.97438 * 25 24 23 41 41 H 0.96998 * 119.99939 * 179.97438 * 25 24 23 42 42 H 1.07995 * 119.63512 * 180.28890 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9029 1.0242 0.0000 4 6 2.0549 -0.7496 -1.2427 5 1 1.3051 -1.4460 -1.6181 6 7 2.4550 0.1929 -2.2904 7 6 2.5546 -0.2291 -3.5893 8 1 2.3378 -1.2567 -3.8414 9 6 2.9343 0.6638 -4.5821 10 7 3.1980 1.9161 -4.2749 11 14 3.0708 0.0880 -6.3538 12 1 1.7642 0.2703 -7.0356 13 1 4.1101 0.8844 -7.0544 14 1 3.4467 -1.3485 -6.3799 15 6 3.2877 -1.5143 -0.6922 16 6 2.8145 -1.8794 0.7369 17 7 2.0300 -0.7140 1.1840 18 6 1.8037 -0.3644 2.4658 19 8 2.2019 -1.0740 3.3686 20 6 1.0704 0.8837 2.7740 21 6 0.7615 1.2164 4.0969 22 6 0.0746 2.3946 4.3355 23 6 -0.2835 3.2022 3.2586 24 6 -1.0201 4.4661 3.5044 25 7 -1.3713 5.2538 2.4687 26 8 -1.3077 4.7907 4.6393 27 7 0.0259 2.8557 2.0153 28 6 0.6816 1.7486 1.7478 29 1 -0.3633 0.2044 1.0071 30 1 -0.3633 0.7701 -0.6805 31 1 -0.3633 -0.9743 -0.3267 32 1 2.6494 1.1159 -2.0641 33 1 3.4629 2.5403 -4.9686 34 1 4.1654 -0.8690 -0.6602 35 1 3.4852 -2.4112 -1.2794 36 1 3.6715 -2.0338 1.3924 37 1 2.1891 -2.7719 0.7149 38 1 1.0517 0.5703 4.9122 39 1 -0.1805 2.6839 5.3443 40 1 -1.1420 4.9945 1.5625 41 1 -1.8533 6.0801 2.6295 42 1 0.9191 1.5030 0.7233 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987612571.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:33 Heat of formation + Delta-G solvation = 18.143140 kcal Electronic energy + Delta-G solvation = -26678.744209 eV Core-core repulsion = 22853.644980 eV Total energy + Delta-G solvation = -3825.099229 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.39595 -40.04518 -38.71024 -37.77883 -34.35023 -34.11472 -33.01538 -32.61819 -31.62428 -30.47266 -29.27976 -25.95987 -25.37578 -23.81810 -23.30171 -22.80822 -21.23054 -20.52966 -19.68198 -18.40047 -17.90423 -17.47855 -17.00326 -16.40781 -16.01625 -15.57171 -15.32322 -15.24513 -14.78384 -14.48179 -14.22859 -13.73704 -13.68134 -13.52044 -13.34775 -13.17445 -12.77814 -12.67682 -12.31695 -11.92379 -11.71969 -11.38077 -11.19990 -10.91907 -10.78966 -10.71070 -10.44438 -10.28032 -10.22985 -10.07058 -9.96537 -9.85791 -9.69620 -9.35834 -9.05769 -8.64876 -7.16743 -5.92757 -3.24015 0.03224 0.93263 2.20301 2.83625 2.93529 3.08985 3.34587 3.40664 3.42085 3.65507 3.91942 4.24830 4.45506 4.51768 4.58225 4.67829 4.75851 4.90265 4.96642 5.11263 5.26916 5.33713 5.40181 5.51026 5.55403 5.66065 5.68835 5.69808 5.85970 6.01176 6.08165 6.11993 6.17354 6.26930 6.33178 6.46530 6.48105 6.76181 6.99605 7.43112 7.45750 7.56456 7.94092 8.02428 8.23775 9.36134 9.87078 10.21712 11.29113 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.013739 B = 0.003625 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.432711 B = 7722.072031 C = 9450.756572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.099 3.901 3 H 0.095 0.905 4 C 0.180 3.820 5 H 0.070 0.930 6 N -0.714 5.714 7 C -0.247 4.247 8 H 0.073 0.927 9 C -0.006 4.006 10 N -0.929 5.929 11 Si 0.908 3.092 12 H -0.289 1.289 13 H -0.291 1.291 14 H -0.281 1.281 15 C -0.157 4.157 16 C 0.107 3.893 17 N -0.599 5.599 18 C 0.576 3.424 19 O -0.539 6.539 20 C -0.164 4.164 21 C -0.024 4.024 22 C -0.125 4.125 23 C 0.089 3.911 24 C 0.579 3.421 25 N -0.832 5.832 26 O -0.538 6.538 27 N -0.461 5.461 28 C 0.100 3.900 29 H 0.058 0.942 30 H 0.083 0.917 31 H 0.068 0.932 32 H 0.385 0.615 33 H 0.257 0.743 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.155 0.845 39 H 0.154 0.846 40 H 0.415 0.585 41 H 0.405 0.595 42 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.938 0.178 12.493 14.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.005 4.005 3 H 0.112 0.888 4 C 0.068 3.932 5 H 0.088 0.912 6 N -0.355 5.355 7 C -0.378 4.378 8 H 0.091 0.909 9 C -0.203 4.203 10 N -0.576 5.576 11 Si 0.739 3.261 12 H -0.216 1.216 13 H -0.217 1.217 14 H -0.207 1.207 15 C -0.198 4.198 16 C -0.015 4.015 17 N -0.331 5.331 18 C 0.364 3.636 19 O -0.418 6.418 20 C -0.169 4.169 21 C -0.050 4.050 22 C -0.146 4.146 23 C -0.049 4.049 24 C 0.362 3.638 25 N -0.395 5.395 26 O -0.414 6.414 27 N -0.172 5.172 28 C -0.058 4.058 29 H 0.077 0.923 30 H 0.102 0.898 31 H 0.087 0.913 32 H 0.220 0.780 33 H 0.067 0.933 34 H 0.096 0.904 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.172 0.828 39 H 0.172 0.828 40 H 0.246 0.754 41 H 0.237 0.763 42 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -7.103 0.389 12.966 14.789 hybrid contribution 0.378 -0.253 -0.665 0.806 sum -6.725 0.136 12.301 14.020 Atomic orbital electron populations 1.22652 0.94213 1.04171 1.02157 1.22441 0.94518 0.97033 0.86466 0.88835 1.21267 0.93933 0.91531 0.86420 0.91194 1.42316 1.81072 1.09016 1.03099 1.19171 1.39736 0.95269 0.83622 0.90897 1.24749 1.01745 0.95624 0.98188 1.69645 1.52200 1.03078 1.32648 0.86189 0.77406 0.77719 0.84814 1.21578 1.21722 1.20660 1.23618 1.01206 1.02009 0.92948 1.22341 0.94989 0.87610 0.96560 1.48429 1.51512 1.28783 1.04409 1.17605 0.79709 0.84676 0.81588 1.90765 1.52642 1.53469 1.44921 1.21201 1.02638 0.97553 0.95495 1.21760 0.91985 0.94956 0.96294 1.22072 0.97623 0.93864 1.01014 1.21353 0.97878 0.95522 0.90119 1.17899 0.78280 0.82860 0.84808 1.43655 1.59719 1.25511 1.10663 1.90824 1.55228 1.73211 1.22111 1.67748 1.11610 1.17132 1.20739 1.25275 0.90354 0.87532 1.02662 0.92294 0.89805 0.91269 0.78015 0.93273 0.90433 0.90135 0.90746 0.91421 0.82785 0.82830 0.75390 0.76346 0.77327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.14 7.82 37.16 0.29 -1.85 16 2 C 0.10 1.38 2.45 -66.95 -0.16 1.22 16 3 H 0.09 1.35 5.60 -51.93 -0.29 1.06 16 4 C 0.18 2.98 3.11 -66.10 -0.21 2.77 16 5 H 0.07 1.15 7.54 -51.93 -0.39 0.76 16 6 N -0.71 -15.38 5.25 -51.65 -0.27 -15.65 16 7 C -0.25 -6.11 9.98 -15.06 -0.15 -6.26 16 8 H 0.07 1.75 7.83 -52.48 -0.41 1.34 16 9 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 10 N -0.93 -25.79 13.06 55.49 0.72 -25.07 16 11 Si 0.91 20.80 29.55 -169.99 -5.02 15.77 16 12 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 13 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 14 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 15 C -0.16 -2.37 6.77 -24.59 -0.17 -2.53 16 16 C 0.11 1.45 6.89 -2.53 -0.02 1.44 16 17 N -0.60 -8.44 3.07 -166.08 -0.51 -8.95 16 18 C 0.58 8.55 7.56 -12.26 -0.09 8.46 16 19 O -0.54 -9.29 16.71 5.33 0.09 -9.20 16 20 C -0.16 -2.14 5.31 -104.73 -0.56 -2.69 16 21 C -0.02 -0.27 9.71 -38.89 -0.38 -0.65 16 22 C -0.12 -1.39 9.62 -39.11 -0.38 -1.77 16 23 C 0.09 1.08 6.75 -82.93 -0.56 0.52 16 24 C 0.58 6.83 8.09 -12.10 -0.10 6.73 16 25 N -0.83 -7.09 8.86 30.64 0.27 -6.82 16 26 O -0.54 -7.72 17.15 5.37 0.09 -7.63 16 27 N -0.46 -5.68 9.52 -9.48 -0.09 -5.77 16 28 C 0.10 1.27 7.76 -17.17 -0.13 1.14 16 29 H 0.06 0.70 4.91 -51.93 -0.26 0.44 16 30 H 0.08 1.03 8.11 -51.93 -0.42 0.60 16 31 H 0.07 0.83 7.67 -51.93 -0.40 0.43 16 32 H 0.39 8.88 7.52 -40.82 -0.31 8.57 16 33 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 34 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.08 1.17 8.14 -51.92 -0.42 0.75 16 36 H 0.07 1.01 8.08 -51.93 -0.42 0.59 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.15 1.59 7.73 -52.49 -0.41 1.19 16 39 H 0.15 1.50 7.63 -52.49 -0.40 1.10 16 40 H 0.42 3.19 8.15 -40.82 -0.33 2.86 16 41 H 0.41 2.62 8.93 -40.82 -0.36 2.26 16 42 H 0.21 2.65 2.09 -55.23 -0.12 2.53 16 LS Contribution 346.32 15.07 5.22 5.22 Total: -1.00 -30.77 346.32 -7.12 -37.89 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: -4.92 Total: 13.93 kcal Atomic # 6 Polarization: 8.96 SS G_CDS: -2.70 Total: 6.26 kcal Atomic # 7 Polarization: -62.37 SS G_CDS: 0.13 Total: -62.25 kcal Atomic # 8 Polarization: -17.00 SS G_CDS: 0.18 Total: -16.82 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.77 -7.12 -37.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987612571.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.032 kcal (2) G-P(sol) polarization free energy of solvation -30.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds