Wall clock time and date at job start Tue Mar 31 2020 05:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35725 * 116.99950 * 2 1 4 4 C 1.39452 * 120.80666 * 179.97438 * 3 2 1 5 5 N 1.31961 * 119.08057 * 180.02562 * 4 3 2 6 6 C 1.32539 * 120.83943 * 359.97438 * 5 4 3 7 7 C 1.48287 * 119.11216 * 180.02562 * 6 5 4 8 8 O 1.21502 * 120.00312 * 359.97438 * 7 6 5 9 9 N 1.34780 * 119.99805 * 180.02562 * 7 6 5 10 10 C 1.47400 * 125.59021 * 0.02562 * 9 7 6 11 11 C 1.54866 * 104.82043 * 204.36195 * 10 9 7 12 12 C 1.55167 * 101.73286 * 322.77126 * 11 10 9 13 13 H 1.08994 * 113.26295 * 158.94877 * 12 11 10 14 14 C 1.53753 * 108.31123 * 285.38946 * 12 11 10 15 15 N 1.46588 * 108.11159 * 124.37204 * 14 12 11 16 16 C 1.36943 * 125.30989 * 181.28726 * 15 14 12 17 17 H 1.08002 * 119.99788 * 359.97438 * 16 15 14 18 18 C 1.38811 * 119.99622 * 180.27725 * 16 15 14 19 19 N 1.31614 * 120.00467 * 359.72375 * 18 16 15 20 20 Si 1.86801 * 119.99700 * 179.72266 * 18 16 15 21 21 H 1.48504 * 109.47306 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47021 * 119.99661 * 20 18 16 23 23 H 1.48501 * 109.47039 * 240.00078 * 20 18 16 24 24 C 1.46708 * 109.37838 * 1.54911 * 15 14 12 25 25 C 1.46711 * 125.58757 * 179.97438 * 9 7 6 26 26 H 1.09000 * 111.53364 * 56.13795 * 25 9 7 27 27 N 1.32545 * 121.77293 * 0.28242 * 6 5 4 28 28 C 1.31950 * 120.83492 * 359.43483 * 27 6 5 29 29 H 1.08998 * 109.47283 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47660 * 300.00087 * 1 2 3 31 31 H 1.08999 * 109.46956 * 60.00193 * 1 2 3 32 32 H 1.07988 * 120.46197 * 359.97438 * 4 3 2 33 33 H 1.08999 * 110.37048 * 85.52851 * 10 9 7 34 34 H 1.09001 * 110.36990 * 323.19854 * 10 9 7 35 35 H 1.08992 * 110.97809 * 204.66152 * 11 10 9 36 36 H 1.09004 * 110.97268 * 80.87821 * 11 10 9 37 37 H 1.09003 * 109.74357 * 4.70244 * 14 12 11 38 38 H 1.08998 * 109.73457 * 244.04094 * 14 12 11 39 39 H 0.96995 * 120.00147 * 180.02562 * 19 18 16 40 40 H 1.09007 * 109.98447 * 101.13769 * 24 15 14 41 41 H 1.08994 * 109.98850 * 222.44530 * 24 15 14 42 42 H 1.08004 * 120.45569 * 180.27659 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2093 0.0000 4 6 3.4366 1.3019 0.0005 5 7 4.0000 2.4952 0.0010 6 6 3.2610 3.5955 0.0005 7 6 3.9342 4.9167 0.0005 8 8 5.1476 4.9804 0.0015 9 7 3.2001 6.0471 0.0005 10 6 1.7276 6.1136 0.0011 11 6 1.3933 7.4938 -0.6167 12 6 2.5235 8.3827 -0.0335 13 1 2.6966 9.2918 -0.6093 14 6 2.2094 8.6539 1.4470 15 7 3.3609 8.2205 2.2439 16 6 3.4454 8.2789 3.6095 17 1 2.6195 8.6696 4.1854 18 6 4.5951 7.8419 4.2529 19 7 5.6018 7.3664 3.5511 20 14 4.7135 7.9288 6.1152 21 1 3.4574 8.4990 6.6650 22 1 4.9191 6.5637 6.6623 23 1 5.8583 8.7935 6.4986 24 6 4.4110 7.7201 1.3499 25 6 3.7357 7.4129 0.0011 26 1 4.4080 7.5794 -0.8406 27 7 1.9365 3.5466 0.0050 28 6 1.3023 2.3895 -0.0009 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 4.0446 0.4095 0.0014 33 1 1.3454 6.0514 1.0199 34 1 1.3114 5.3133 -0.6107 35 1 0.4142 7.8418 -0.2876 36 1 1.4475 7.4577 -1.7048 37 1 1.3236 8.0927 1.7443 38 1 2.0376 9.7197 1.5975 39 1 6.4050 7.0607 4.0008 40 1 5.1822 8.4794 1.2194 41 1 4.8488 6.8109 1.7617 42 1 0.2228 2.3568 -0.0017 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076020772.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:21 Heat of formation + Delta-G solvation = 41.428737 kcal Electronic energy + Delta-G solvation = -27436.622009 eV Core-core repulsion = 23612.532519 eV Total energy + Delta-G solvation = -3824.089490 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.55848 -39.96153 -38.87653 -37.42767 -34.80219 -33.96280 -32.17858 -31.28702 -30.72891 -28.85577 -28.06213 -26.39974 -24.96073 -24.67147 -24.29014 -22.34988 -20.97593 -19.80670 -19.10598 -18.51990 -18.24023 -17.22200 -16.67098 -16.48754 -16.09528 -15.29011 -15.02097 -14.93716 -14.64833 -14.22944 -13.89488 -13.71849 -13.64770 -13.25628 -13.01180 -12.50920 -12.41914 -12.01087 -11.89684 -11.78266 -11.67915 -11.42839 -11.12946 -10.95944 -10.90412 -10.65662 -10.41256 -10.19746 -10.05503 -9.74793 -9.62254 -9.47486 -9.24130 -8.97200 -8.54580 -7.99377 -6.72384 -5.56108 -2.97162 0.44688 0.82461 2.61795 2.90672 3.08587 3.44907 3.49058 3.52827 3.85320 3.92752 3.95772 4.28882 4.41107 4.55314 4.67445 4.70588 4.84650 4.98988 5.03327 5.12607 5.31025 5.39381 5.56553 5.65038 5.70794 5.82621 5.89259 5.98392 6.12092 6.21197 6.38611 6.45713 6.46719 6.60062 6.68469 6.74901 6.81801 6.95083 7.52657 7.72476 7.77802 7.99537 8.06027 8.47605 8.62971 9.31275 9.92969 10.55671 11.48631 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.013347 B = 0.004296 C = 0.003827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.305095 B = 6515.856133 C = 7314.507159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.300 6.300 3 C 0.034 3.966 4 C 0.124 3.876 5 N -0.427 5.427 6 C 0.260 3.740 7 C 0.596 3.404 8 O -0.499 6.499 9 N -0.577 5.577 10 C 0.106 3.894 11 C -0.129 4.129 12 C -0.110 4.110 13 H 0.096 0.904 14 C 0.143 3.857 15 N -0.600 5.600 16 C -0.230 4.230 17 H 0.077 0.923 18 C -0.008 4.008 19 N -0.913 5.913 20 Si 0.910 3.090 21 H -0.281 1.281 22 H -0.292 1.292 23 H -0.290 1.290 24 C 0.154 3.846 25 C 0.115 3.885 26 H 0.081 0.919 27 N -0.450 5.450 28 C 0.060 3.940 29 H 0.107 0.893 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.182 0.818 33 H 0.069 0.931 34 H 0.095 0.905 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.025 0.975 38 H 0.020 0.980 39 H 0.252 0.748 40 H 0.024 0.976 41 H 0.106 0.894 42 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.125 -11.814 -11.739 21.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.210 6.210 3 C -0.017 4.017 4 C -0.045 4.045 5 N -0.142 5.142 6 C -0.009 4.009 7 C 0.379 3.621 8 O -0.371 6.371 9 N -0.310 5.310 10 C -0.017 4.017 11 C -0.167 4.167 12 C -0.129 4.129 13 H 0.115 0.885 14 C 0.017 3.983 15 N -0.326 5.326 16 C -0.358 4.358 17 H 0.095 0.905 18 C -0.204 4.204 19 N -0.560 5.560 20 Si 0.741 3.259 21 H -0.206 1.206 22 H -0.219 1.219 23 H -0.217 1.217 24 C 0.029 3.971 25 C 0.012 3.988 26 H 0.099 0.901 27 N -0.167 5.167 28 C -0.108 4.108 29 H 0.125 0.875 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.199 0.801 33 H 0.087 0.913 34 H 0.113 0.887 35 H 0.098 0.902 36 H 0.087 0.913 37 H 0.043 0.957 38 H 0.038 0.962 39 H 0.063 0.937 40 H 0.042 0.958 41 H 0.124 0.876 42 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -12.702 -11.186 -11.551 20.492 hybrid contribution -0.752 -0.740 1.128 1.545 sum -13.454 -11.927 -10.423 20.782 Atomic orbital electron populations 1.23226 0.77534 1.04854 1.01922 1.86075 1.22050 1.25080 1.87837 1.21207 0.95264 0.86778 0.98424 1.22902 0.89218 0.96363 0.96047 1.68307 1.39715 0.97500 1.08654 1.22917 0.85892 0.94400 0.97679 1.16550 0.85769 0.80786 0.79023 1.90842 1.12240 1.85434 1.48552 1.47939 1.07573 1.04914 1.70599 1.22598 0.80050 0.97302 1.01725 1.22885 0.98761 0.95238 0.99801 1.23065 0.94525 0.97407 0.97924 0.88544 1.21172 0.91892 0.96872 0.88402 1.44185 1.12964 1.73327 1.02114 1.19037 1.00300 1.36107 0.80340 0.90504 1.24824 0.96359 1.01280 0.97945 1.69909 1.05862 1.47321 1.32921 0.86073 0.77362 0.77193 0.85293 1.20589 1.21871 1.21708 1.21737 0.89506 1.01083 0.84788 1.22738 0.95619 0.79248 1.01210 0.90088 1.68530 1.10372 1.27798 1.09982 1.23521 1.01339 0.86919 0.98982 0.87477 0.91979 0.92086 0.80076 0.91256 0.88682 0.90164 0.91338 0.95741 0.96215 0.93680 0.95808 0.87618 0.80800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 9.84 101.05 0.99 1.08 16 2 O -0.30 -2.57 10.51 -18.88 -0.20 -2.77 16 3 C 0.03 0.37 6.75 -38.68 -0.26 0.11 16 4 C 0.12 1.58 11.28 -17.04 -0.19 1.39 16 5 N -0.43 -7.40 10.11 -11.03 -0.11 -7.52 16 6 C 0.26 4.73 7.57 -157.05 -1.19 3.54 16 7 C 0.60 12.84 7.51 -12.13 -0.09 12.75 16 8 O -0.50 -12.56 16.58 5.36 0.09 -12.47 16 9 N -0.58 -11.41 3.02 -163.10 -0.49 -11.90 16 10 C 0.11 1.69 5.46 -2.57 -0.01 1.68 16 11 C -0.13 -1.74 6.30 -24.60 -0.16 -1.90 16 12 C -0.11 -1.86 4.25 -87.87 -0.37 -2.24 16 13 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 14 C 0.14 2.95 6.41 -3.60 -0.02 2.93 16 15 N -0.60 -15.78 3.38 -171.96 -0.58 -16.36 16 16 C -0.23 -6.60 10.25 -15.06 -0.15 -6.75 16 17 H 0.08 2.13 7.83 -52.49 -0.41 1.71 16 18 C -0.01 -0.22 5.48 -17.43 -0.10 -0.32 16 19 N -0.91 -28.42 10.16 55.49 0.56 -27.85 16 20 Si 0.91 22.99 29.55 -169.99 -5.02 17.96 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 22 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 23 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 24 C 0.15 4.03 5.20 -3.44 -0.02 4.01 16 25 C 0.12 2.37 3.65 -66.12 -0.24 2.13 16 26 H 0.08 1.59 8.14 -51.93 -0.42 1.16 16 27 N -0.45 -6.66 6.57 -11.03 -0.07 -6.73 16 28 C 0.06 0.66 10.31 -17.05 -0.18 0.48 16 29 H 0.11 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.25 7.71 -51.93 -0.40 -0.15 16 31 H 0.06 0.20 7.71 -51.93 -0.40 -0.20 16 32 H 0.18 1.70 8.06 -52.49 -0.42 1.28 16 33 H 0.07 1.23 7.49 -51.93 -0.39 0.84 16 34 H 0.10 1.34 5.84 -51.93 -0.30 1.04 16 35 H 0.08 0.94 7.96 -51.93 -0.41 0.52 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.02 0.50 6.78 -51.93 -0.35 0.15 16 38 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.25 7.68 8.31 -40.82 -0.34 7.35 16 40 H 0.02 0.67 8.14 -51.92 -0.42 0.25 16 41 H 0.11 3.23 5.31 -51.93 -0.28 2.95 16 42 H 0.18 1.20 6.47 -52.48 -0.34 0.86 16 LS Contribution 339.77 15.07 5.12 5.12 Total: -1.00 -36.97 339.77 -8.07 -45.04 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: -5.38 Total: -1.41 kcal Atomic # 6 Polarization: 20.88 SS G_CDS: -1.99 Total: 18.89 kcal Atomic # 7 Polarization: -69.67 SS G_CDS: -0.69 Total: -70.37 kcal Atomic # 8 Polarization: -15.13 SS G_CDS: -0.11 Total: -15.24 kcal Atomic # 14 Polarization: 22.99 SS G_CDS: -5.02 Total: 17.96 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -36.97 -8.07 -45.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076020772.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.473 kcal (2) G-P(sol) polarization free energy of solvation -36.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds