Wall clock time and date at job start Tue Mar 31 2020 05:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35725 * 116.99950 * 2 1 4 4 C 1.39452 * 120.80666 * 179.97438 * 3 2 1 5 5 N 1.31961 * 119.08057 * 180.02562 * 4 3 2 6 6 C 1.32539 * 120.83943 * 359.97438 * 5 4 3 7 7 C 1.48287 * 119.11216 * 180.02562 * 6 5 4 8 8 O 1.21502 * 120.00312 * 359.97438 * 7 6 5 9 9 N 1.34780 * 119.99805 * 180.02562 * 7 6 5 10 10 C 1.47400 * 125.59021 * 0.02562 * 9 7 6 11 11 C 1.54866 * 104.82043 * 204.36195 * 10 9 7 12 12 C 1.55167 * 101.73286 * 322.77126 * 11 10 9 13 13 H 1.08994 * 113.26295 * 158.94877 * 12 11 10 14 14 C 1.53753 * 108.31123 * 285.38946 * 12 11 10 15 15 N 1.46588 * 108.11159 * 124.37204 * 14 12 11 16 16 C 1.36943 * 125.30989 * 181.28726 * 15 14 12 17 17 H 1.08002 * 119.99788 * 359.97438 * 16 15 14 18 18 C 1.38811 * 119.99622 * 180.27725 * 16 15 14 19 19 N 1.31614 * 120.00467 * 359.72375 * 18 16 15 20 20 Si 1.86801 * 119.99700 * 179.72266 * 18 16 15 21 21 H 1.48504 * 109.47306 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47021 * 119.99661 * 20 18 16 23 23 H 1.48501 * 109.47039 * 240.00078 * 20 18 16 24 24 C 1.46708 * 109.37838 * 1.54911 * 15 14 12 25 25 C 1.46711 * 125.58757 * 179.97438 * 9 7 6 26 26 H 1.09000 * 111.53364 * 56.13795 * 25 9 7 27 27 N 1.32545 * 121.77293 * 0.28242 * 6 5 4 28 28 C 1.31950 * 120.83492 * 359.43483 * 27 6 5 29 29 H 1.08998 * 109.47283 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47660 * 300.00087 * 1 2 3 31 31 H 1.08999 * 109.46956 * 60.00193 * 1 2 3 32 32 H 1.07988 * 120.46197 * 359.97438 * 4 3 2 33 33 H 1.08999 * 110.37048 * 85.52851 * 10 9 7 34 34 H 1.09001 * 110.36990 * 323.19854 * 10 9 7 35 35 H 1.08992 * 110.97809 * 204.66152 * 11 10 9 36 36 H 1.09004 * 110.97268 * 80.87821 * 11 10 9 37 37 H 1.09003 * 109.74357 * 4.70244 * 14 12 11 38 38 H 1.08998 * 109.73457 * 244.04094 * 14 12 11 39 39 H 0.96995 * 120.00147 * 180.02562 * 19 18 16 40 40 H 1.09007 * 109.98447 * 101.13769 * 24 15 14 41 41 H 1.08994 * 109.98850 * 222.44530 * 24 15 14 42 42 H 1.08004 * 120.45569 * 180.27659 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2093 0.0000 4 6 3.4366 1.3019 0.0005 5 7 4.0000 2.4952 0.0010 6 6 3.2610 3.5955 0.0005 7 6 3.9342 4.9167 0.0005 8 8 5.1476 4.9804 0.0015 9 7 3.2001 6.0471 0.0005 10 6 1.7276 6.1136 0.0011 11 6 1.3933 7.4938 -0.6167 12 6 2.5235 8.3827 -0.0335 13 1 2.6966 9.2918 -0.6093 14 6 2.2094 8.6539 1.4470 15 7 3.3609 8.2205 2.2439 16 6 3.4454 8.2789 3.6095 17 1 2.6195 8.6696 4.1854 18 6 4.5951 7.8419 4.2529 19 7 5.6018 7.3664 3.5511 20 14 4.7135 7.9288 6.1152 21 1 3.4574 8.4990 6.6650 22 1 4.9191 6.5637 6.6623 23 1 5.8583 8.7935 6.4986 24 6 4.4110 7.7201 1.3499 25 6 3.7357 7.4129 0.0011 26 1 4.4080 7.5794 -0.8406 27 7 1.9365 3.5466 0.0050 28 6 1.3023 2.3895 -0.0009 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 4.0446 0.4095 0.0014 33 1 1.3454 6.0514 1.0199 34 1 1.3114 5.3133 -0.6107 35 1 0.4142 7.8418 -0.2876 36 1 1.4475 7.4577 -1.7048 37 1 1.3236 8.0927 1.7443 38 1 2.0376 9.7197 1.5975 39 1 6.4050 7.0607 4.0008 40 1 5.1822 8.4794 1.2194 41 1 4.8488 6.8109 1.7617 42 1 0.2228 2.3568 -0.0017 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076020772.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:20 Heat of formation + Delta-G solvation = 13.731542 kcal Electronic energy + Delta-G solvation = -27437.823049 eV Core-core repulsion = 23612.532519 eV Total energy + Delta-G solvation = -3825.290530 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.62224 -41.39967 -39.83019 -38.96454 -36.56207 -35.15731 -33.93835 -32.54678 -32.24253 -30.54254 -28.78891 -27.95937 -26.59276 -26.09766 -25.36170 -23.66531 -22.70687 -21.27981 -20.61369 -19.37954 -19.26639 -18.87902 -18.36229 -17.63865 -17.20604 -16.86638 -16.53936 -16.05185 -15.83619 -15.62534 -15.49871 -14.98754 -14.79230 -14.65635 -14.44432 -14.03258 -13.75189 -13.56890 -13.38793 -12.99023 -12.94030 -12.83825 -12.54271 -12.50640 -12.33576 -12.23092 -12.04149 -11.84300 -11.76538 -11.54309 -11.37835 -11.11843 -10.74839 -10.32810 -9.90449 -9.56289 -8.86331 -7.78805 -5.22325 -0.66033 -0.12211 1.40069 1.42574 1.51400 1.52982 1.67212 2.00255 2.46875 2.67219 2.76701 3.05273 3.20513 3.32553 3.51124 3.64015 3.66866 3.79677 3.86654 4.03421 4.31821 4.35940 4.41102 4.51594 4.54123 4.55007 4.69702 4.78412 4.79131 4.84573 4.96673 5.07051 5.17177 5.23803 5.35515 5.38956 5.46981 5.55222 5.60499 5.87320 6.00075 6.29058 6.44763 6.72321 7.08122 7.09637 7.80267 8.41612 9.24174 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.013347 B = 0.004296 C = 0.003827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.305095 B = 6515.856133 C = 7314.507159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.004 3.996 2 O -0.300 6.300 3 C 0.066 3.934 4 C 0.107 3.893 5 N -0.466 5.466 6 C 0.224 3.776 7 C 0.583 3.417 8 O -0.559 6.559 9 N -0.578 5.578 10 C 0.104 3.896 11 C -0.109 4.109 12 C -0.095 4.095 13 H 0.127 0.873 14 C 0.135 3.865 15 N -0.620 5.620 16 C -0.236 4.236 17 H 0.088 0.912 18 C -0.073 4.073 19 N -0.950 5.950 20 Si 0.978 3.022 21 H -0.257 1.257 22 H -0.298 1.298 23 H -0.292 1.292 24 C 0.164 3.836 25 C 0.116 3.884 26 H 0.084 0.916 27 N -0.449 5.449 28 C 0.063 3.937 29 H 0.130 0.870 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.207 0.793 33 H 0.049 0.951 34 H 0.119 0.881 35 H 0.112 0.888 36 H 0.099 0.901 37 H 0.037 0.963 38 H 0.030 0.970 39 H 0.241 0.759 40 H -0.016 1.016 41 H 0.055 0.945 42 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.894 -12.772 -12.715 26.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 O -0.210 6.210 3 C 0.013 3.987 4 C -0.061 4.061 5 N -0.181 5.181 6 C -0.043 4.043 7 C 0.368 3.632 8 O -0.436 6.436 9 N -0.310 5.310 10 C -0.018 4.018 11 C -0.147 4.147 12 C -0.114 4.114 13 H 0.145 0.855 14 C 0.011 3.989 15 N -0.346 5.346 16 C -0.365 4.365 17 H 0.106 0.894 18 C -0.266 4.266 19 N -0.599 5.599 20 Si 0.807 3.193 21 H -0.181 1.181 22 H -0.226 1.226 23 H -0.219 1.219 24 C 0.038 3.962 25 C 0.011 3.989 26 H 0.102 0.898 27 N -0.166 5.166 28 C -0.105 4.105 29 H 0.148 0.852 30 H 0.092 0.908 31 H 0.099 0.901 32 H 0.224 0.776 33 H 0.068 0.932 34 H 0.136 0.864 35 H 0.131 0.869 36 H 0.117 0.883 37 H 0.055 0.945 38 H 0.048 0.952 39 H 0.051 0.949 40 H 0.002 0.998 41 H 0.073 0.927 42 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -17.575 -12.137 -12.544 24.770 hybrid contribution 0.561 -0.646 1.435 1.671 sum -17.014 -12.784 -11.109 24.007 Atomic orbital electron populations 1.23686 0.74795 1.07041 1.03457 1.86113 1.24714 1.23566 1.86574 1.21124 0.94631 0.87765 0.95163 1.23312 0.90956 0.95597 0.96240 1.68159 1.41356 0.98755 1.09822 1.22102 0.87167 0.92956 1.02083 1.17254 0.85524 0.82576 0.77844 1.90777 1.14819 1.86700 1.51300 1.48075 1.09265 1.04069 1.69595 1.22820 0.77475 1.00093 1.01365 1.22929 0.98524 0.91905 1.01320 1.23107 0.93956 0.98184 0.96196 0.85490 1.21461 0.90163 0.97219 0.90067 1.44471 1.14626 1.73521 1.01984 1.19506 1.00263 1.34709 0.82029 0.89409 1.25746 0.96317 1.01810 1.02690 1.70250 1.06220 1.49030 1.34447 0.85003 0.77970 0.76593 0.79765 1.18117 1.22586 1.21930 1.21329 0.89534 0.97514 0.87827 1.22560 0.97379 0.81226 0.97711 0.89762 1.68406 1.08622 1.29691 1.09930 1.24261 1.03181 0.85656 0.97413 0.85213 0.90785 0.90073 0.77631 0.93245 0.86353 0.86939 0.88265 0.94512 0.95238 0.94941 0.99839 0.92679 0.76086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.02 9.84 113.37 1.12 1.13 16 2 O -0.30 -3.99 10.51 -90.48 -0.95 -4.94 16 3 C 0.07 1.24 6.75 22.85 0.15 1.39 16 4 C 0.11 2.66 11.28 84.97 0.96 3.62 16 5 N -0.47 -16.80 10.11 -188.81 -1.91 -18.71 16 6 C 0.22 8.42 7.57 137.56 1.04 9.46 16 7 C 0.58 26.72 7.51 86.92 0.65 27.37 16 8 O -0.56 -30.88 16.58 -3.72 -0.06 -30.95 16 9 N -0.58 -23.40 3.02 -788.22 -2.38 -25.77 16 10 C 0.10 3.11 5.46 86.84 0.47 3.58 16 11 C -0.11 -2.48 6.30 31.97 0.20 -2.27 16 12 C -0.10 -3.02 4.25 -9.01 -0.04 -3.05 16 13 H 0.13 3.30 8.14 -2.39 -0.02 3.28 16 14 C 0.14 5.40 6.41 86.62 0.56 5.96 16 15 N -0.62 -33.49 3.38 -697.95 -2.36 -35.85 16 16 C -0.24 -13.87 10.25 84.03 0.86 -13.01 16 17 H 0.09 4.83 7.83 -2.91 -0.02 4.81 16 18 C -0.07 -4.48 5.48 84.86 0.47 -4.01 16 19 N -0.95 -63.22 10.16 21.65 0.22 -63.00 16 20 Si 0.98 48.80 29.55 68.60 2.03 50.83 16 21 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 22 H -0.30 -15.07 7.11 99.48 0.71 -14.36 16 23 H -0.29 -14.54 7.11 99.48 0.71 -13.83 16 24 C 0.16 9.15 5.20 86.66 0.45 9.60 16 25 C 0.12 4.87 3.65 46.05 0.17 5.03 16 26 H 0.08 3.44 8.14 -2.39 -0.02 3.42 16 27 N -0.45 -12.69 6.57 -188.82 -1.24 -13.93 16 28 C 0.06 1.17 10.31 84.97 0.88 2.04 16 29 H 0.13 0.04 8.14 -2.39 -0.02 0.02 16 30 H 0.07 0.20 7.71 -2.39 -0.02 0.18 16 31 H 0.08 0.09 7.71 -2.39 -0.02 0.07 16 32 H 0.21 3.71 8.06 -2.92 -0.02 3.68 16 33 H 0.05 1.68 7.49 -2.39 -0.02 1.66 16 34 H 0.12 3.00 5.84 -2.39 -0.01 2.98 16 35 H 0.11 1.95 7.96 -2.39 -0.02 1.93 16 36 H 0.10 1.77 8.14 -2.38 -0.02 1.75 16 37 H 0.04 1.40 6.78 -2.39 -0.02 1.38 16 38 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.24 15.79 8.31 -92.71 -0.77 15.02 16 40 H -0.02 -1.00 8.14 -2.38 -0.02 -1.02 16 41 H 0.06 3.66 5.31 -2.39 -0.01 3.65 16 42 H 0.22 1.81 6.47 -2.91 -0.02 1.79 16 Total: -1.00 -91.25 339.77 2.34 -88.91 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: 1.05 Total: 6.55 kcal Atomic # 6 Polarization: 38.92 SS G_CDS: 7.93 Total: 46.85 kcal Atomic # 7 Polarization: -149.59 SS G_CDS: -7.67 Total: -157.25 kcal Atomic # 8 Polarization: -34.87 SS G_CDS: -1.01 Total: -35.88 kcal Atomic # 14 Polarization: 48.80 SS G_CDS: 2.03 Total: 50.83 kcal Total: -91.25 2.34 -88.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076020772.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.645 kcal (2) G-P(sol) polarization free energy of solvation -91.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds