Wall clock time and date at job start Tue Mar 31 2020 04:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30177 * 125.09362 * 2 1 4 4 C 1.34887 * 109.73622 * 179.97438 * 3 2 1 5 5 C 1.46297 * 126.49604 * 179.97438 * 4 3 2 6 6 O 1.21771 * 120.00034 * 180.02562 * 5 4 3 7 7 N 1.34776 * 119.99849 * 0.02562 * 5 4 3 8 8 C 1.46500 * 119.99923 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.47226 * 180.02562 * 8 7 5 10 10 H 1.09004 * 109.47434 * 64.99688 * 9 8 7 11 11 C 1.52997 * 109.47114 * 184.99495 * 9 8 7 12 12 O 1.42903 * 109.47059 * 55.00009 * 11 9 8 13 13 N 1.46498 * 109.46963 * 304.99288 * 9 8 7 14 14 C 1.36943 * 119.99752 * 154.72381 * 13 9 8 15 15 H 1.08002 * 119.99793 * 0.27665 * 14 13 9 16 16 C 1.38811 * 120.00012 * 180.27737 * 14 13 9 17 17 N 1.31611 * 120.00081 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 119.99814 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.47483 * 90.00178 * 18 16 14 20 20 H 1.48498 * 109.47011 * 210.00042 * 18 16 14 21 21 H 1.48502 * 109.47495 * 329.99664 * 18 16 14 22 22 C 1.40140 * 107.00774 * 0.23825 * 4 3 2 23 23 C 1.40177 * 133.57823 * 179.75820 * 22 4 3 24 24 C 1.36333 * 119.20226 * 180.02562 * 23 22 4 25 25 C 1.40395 * 119.55534 * 0.02562 * 24 23 22 26 26 C 1.35032 * 120.44234 * 359.63202 * 25 24 23 27 27 N 1.36250 * 125.08973 * 179.97438 * 2 1 3 28 28 H 1.09002 * 109.47378 * 90.02270 * 1 2 3 29 29 H 1.09005 * 109.47255 * 210.02840 * 1 2 3 30 30 H 1.09000 * 109.46832 * 330.02355 * 1 2 3 31 31 H 0.96998 * 119.99957 * 0.02562 * 7 5 4 32 32 H 1.08995 * 109.47176 * 59.99567 * 8 7 5 33 33 H 1.09008 * 109.46559 * 299.99697 * 8 7 5 34 34 H 1.08997 * 109.47241 * 175.00015 * 11 9 8 35 35 H 1.09002 * 109.47280 * 295.00109 * 11 9 8 36 36 H 0.96700 * 113.99965 * 180.02562 * 12 11 9 37 37 H 0.97001 * 120.00384 * 335.00737 * 13 9 8 38 38 H 0.97008 * 120.00329 * 179.97438 * 17 16 14 39 39 H 1.08006 * 120.39962 * 0.02562 * 23 22 4 40 40 H 1.07998 * 120.22396 * 179.97438 * 24 23 22 41 41 H 1.08003 * 119.77634 * 179.97438 * 25 24 23 42 42 H 1.08000 * 119.69668 * 179.89286 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2553 1.0651 0.0000 4 6 3.5560 0.7079 0.0006 5 6 4.7066 1.6115 0.0002 6 8 5.8368 1.1583 0.0004 7 7 4.5156 2.9457 -0.0002 8 6 5.6677 3.8506 -0.0011 9 6 5.1778 5.3000 -0.0008 10 1 4.6506 5.5053 0.9309 11 6 6.3757 6.2433 -0.1274 12 8 7.1332 5.8981 -1.2889 13 7 4.2702 5.5089 -1.1317 14 6 3.3239 6.4973 -1.0766 15 1 3.2496 7.1256 -0.2013 16 6 2.4601 6.6915 -2.1457 17 7 1.5510 7.6417 -2.0930 18 14 2.5881 5.6042 -3.6593 19 1 1.7140 4.4157 -3.4904 20 1 2.1569 6.3697 -4.8565 21 1 3.9952 5.1630 -3.8343 22 6 3.5964 -0.6929 -0.0046 23 6 4.6393 -1.6296 -0.0109 24 6 4.3390 -2.9594 -0.0154 25 6 2.9952 -3.3659 -0.0143 26 6 2.0033 -2.4497 -0.0013 27 7 2.2902 -1.1149 0.0005 28 1 -0.3634 -0.0004 -1.0277 29 1 -0.3634 -0.8898 0.5143 30 1 -0.3633 0.8902 0.5135 31 1 3.6153 3.3067 0.0001 32 1 6.2704 3.6705 -0.8912 33 1 6.2712 3.6712 0.8888 34 1 6.0217 7.2703 -0.2165 35 1 7.0055 6.1516 0.7576 36 1 7.9100 6.4559 -1.4320 37 1 4.3368 4.9445 -1.9178 38 1 0.9476 7.7777 -2.8403 39 1 5.6684 -1.3017 -0.0121 40 1 5.1295 -3.6952 -0.0207 41 1 2.7532 -4.4185 -0.0183 42 1 0.9737 -2.7758 -0.0023 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676554607.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:23:14 Heat of formation + Delta-G solvation = 16.749601 kcal Electronic energy + Delta-G solvation = -26419.416643 eV Core-core repulsion = 22594.256986 eV Total energy + Delta-G solvation = -3825.159657 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -43.00017 -39.11026 -37.67806 -37.11870 -34.91662 -33.72349 -33.41588 -31.74711 -31.43565 -30.27961 -28.87538 -27.18122 -25.35678 -24.07158 -23.43387 -22.84564 -21.33054 -20.12189 -19.92550 -18.08538 -17.60878 -17.05984 -16.80411 -16.35282 -16.30827 -15.76256 -15.55408 -14.92279 -14.72414 -14.36374 -14.17462 -13.75361 -13.45561 -13.36482 -13.16773 -12.97074 -12.81515 -12.69257 -12.43645 -12.31461 -11.92566 -11.84420 -11.48112 -10.93882 -10.79294 -10.78448 -10.63510 -10.50117 -10.03220 -9.74504 -9.56246 -9.55123 -9.39061 -8.91386 -8.58714 -7.59065 -7.25423 -5.74623 -3.09986 0.44770 0.88558 2.26750 2.33767 3.06475 3.45473 3.51301 3.53882 3.60255 3.79067 4.11467 4.19674 4.40263 4.52424 4.65211 4.70029 4.81249 4.88951 5.13970 5.19402 5.30022 5.33489 5.38724 5.47213 5.55340 5.56549 5.68861 5.81387 5.89803 5.98037 6.00759 6.02036 6.21699 6.31249 6.35341 6.46410 6.71108 6.89615 6.94427 7.58020 7.99034 8.07448 8.18161 8.44375 8.62976 9.22915 9.95990 10.16038 11.43224 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.013515 B = 0.004005 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.313561 B = 6989.391259 C = 8387.531627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.168 3.832 3 N -0.406 5.406 4 C -0.052 4.052 5 C 0.601 3.399 6 O -0.558 6.558 7 N -0.701 5.701 8 C 0.116 3.884 9 C 0.171 3.829 10 H 0.075 0.925 11 C 0.060 3.940 12 O -0.564 6.564 13 N -0.738 5.738 14 C -0.247 4.247 15 H 0.091 0.909 16 C 0.012 3.988 17 N -0.932 5.932 18 Si 0.879 3.121 19 H -0.283 1.283 20 H -0.292 1.292 21 H -0.274 1.274 22 C 0.070 3.930 23 C -0.063 4.063 24 C -0.121 4.121 25 C -0.134 4.134 26 C 0.049 3.951 27 N -0.364 5.364 28 H 0.082 0.918 29 H 0.072 0.928 30 H 0.098 0.902 31 H 0.417 0.583 32 H 0.076 0.924 33 H 0.066 0.934 34 H 0.054 0.946 35 H 0.031 0.969 36 H 0.365 0.635 37 H 0.366 0.634 38 H 0.259 0.741 39 H 0.160 0.840 40 H 0.140 0.860 41 H 0.150 0.850 42 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.427 -22.080 6.585 23.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.089 4.089 3 N -0.122 5.122 4 C -0.187 4.187 5 C 0.388 3.612 6 O -0.437 6.437 7 N -0.352 5.352 8 C -0.008 4.008 9 C 0.061 3.939 10 H 0.093 0.907 11 C -0.021 4.021 12 O -0.368 6.368 13 N -0.381 5.381 14 C -0.376 4.376 15 H 0.108 0.892 16 C -0.184 4.184 17 N -0.580 5.580 18 Si 0.709 3.291 19 H -0.209 1.209 20 H -0.219 1.219 21 H -0.200 1.200 22 C -0.042 4.042 23 C -0.083 4.083 24 C -0.143 4.143 25 C -0.154 4.154 26 C -0.073 4.073 27 N -0.035 5.035 28 H 0.101 0.899 29 H 0.091 0.909 30 H 0.116 0.884 31 H 0.254 0.746 32 H 0.095 0.905 33 H 0.084 0.916 34 H 0.072 0.928 35 H 0.049 0.951 36 H 0.210 0.790 37 H 0.200 0.800 38 H 0.069 0.931 39 H 0.177 0.823 40 H 0.158 0.842 41 H 0.167 0.833 42 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 2.143 -21.739 6.606 22.821 hybrid contribution 0.218 -0.817 -1.144 1.423 sum 2.361 -22.555 5.462 23.327 Atomic orbital electron populations 1.20213 0.83808 1.04332 1.03900 1.23414 0.95785 0.78723 1.10941 1.70127 1.01426 1.27278 1.13325 1.20594 0.91691 0.89623 1.16783 1.16468 0.86242 0.81905 0.76616 1.90761 1.23150 1.77074 1.52734 1.45811 1.11787 1.04857 1.72736 1.21626 0.87802 0.89099 1.02302 1.20567 0.89664 0.90587 0.93114 0.90732 1.22999 0.93093 1.00039 0.86005 1.86536 1.42640 1.60315 1.47284 1.42722 1.38340 1.40556 1.16460 1.19048 1.07096 1.08626 1.02867 0.89152 1.24594 0.97848 0.98165 0.97841 1.69699 1.22274 1.33821 1.32182 0.86619 0.77910 0.80600 0.83973 1.20942 1.21899 1.20025 1.19256 0.84014 0.94305 1.06649 1.20826 0.99176 0.91166 0.97119 1.21196 0.96544 0.95880 1.00645 1.20886 0.92349 0.99869 1.02336 1.21652 1.01491 0.80373 1.03740 1.42903 1.07932 1.06461 1.46194 0.89918 0.90890 0.88367 0.74576 0.90546 0.91599 0.92789 0.95106 0.78985 0.80046 0.93102 0.82291 0.84175 0.83262 0.81620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.59 10.32 36.00 0.37 -0.22 16 2 C 0.17 2.31 7.94 -154.57 -1.23 1.08 16 3 N -0.41 -7.09 10.90 -6.74 -0.07 -7.16 16 4 C -0.05 -0.93 7.05 -82.57 -0.58 -1.51 16 5 C 0.60 11.58 7.77 -13.02 -0.10 11.48 16 6 O -0.56 -11.30 15.75 5.13 0.08 -11.22 16 7 N -0.70 -13.43 5.38 -61.73 -0.33 -13.76 16 8 C 0.12 2.14 5.12 -4.04 -0.02 2.11 16 9 C 0.17 3.34 2.84 -67.93 -0.19 3.15 16 10 H 0.07 1.42 8.08 -51.93 -0.42 1.00 16 11 C 0.06 1.04 6.86 37.16 0.25 1.29 16 12 O -0.56 -9.88 12.64 -35.23 -0.45 -10.33 16 13 N -0.74 -17.68 4.31 -53.43 -0.23 -17.91 16 14 C -0.25 -6.88 10.41 -15.06 -0.16 -7.04 16 15 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 16 C 0.01 0.34 5.50 -17.43 -0.10 0.25 16 17 N -0.93 -29.27 13.97 55.49 0.78 -28.50 16 18 Si 0.88 23.06 27.74 -169.99 -4.71 18.35 16 19 H -0.28 -7.42 7.11 56.52 0.40 -7.02 16 20 H -0.29 -7.73 7.11 56.52 0.40 -7.33 16 21 H -0.27 -7.09 6.52 56.52 0.37 -6.72 16 22 C 0.07 1.05 6.72 -83.99 -0.56 0.48 16 23 C -0.06 -0.78 9.73 -39.54 -0.38 -1.16 16 24 C -0.12 -1.04 10.08 -39.46 -0.40 -1.44 16 25 C -0.13 -0.93 9.98 -39.91 -0.40 -1.33 16 26 C 0.05 0.40 10.77 -16.60 -0.18 0.23 16 27 N -0.36 -4.55 2.94 -57.93 -0.17 -4.72 16 28 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.07 0.44 7.99 -51.93 -0.41 0.02 16 30 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.42 8.39 7.84 -40.82 -0.32 8.07 16 32 H 0.08 1.53 7.39 -51.93 -0.38 1.14 16 33 H 0.07 1.10 8.14 -51.92 -0.42 0.68 16 34 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.37 4.56 9.12 45.56 0.42 4.98 16 37 H 0.37 9.18 5.66 -40.82 -0.23 8.95 16 38 H 0.26 7.79 8.31 -40.82 -0.34 7.46 16 39 H 0.16 2.01 7.17 -52.48 -0.38 1.63 16 40 H 0.14 0.80 8.06 -52.49 -0.42 0.37 16 41 H 0.15 0.51 8.06 -52.48 -0.42 0.08 16 42 H 0.17 0.74 7.94 -52.49 -0.42 0.32 16 LS Contribution 359.85 15.07 5.42 5.42 Total: -1.00 -37.13 359.85 -8.06 -45.20 By element: Atomic # 1 Polarization: 21.96 SS G_CDS: -4.70 Total: 17.26 kcal Atomic # 6 Polarization: 11.05 SS G_CDS: -3.68 Total: 7.37 kcal Atomic # 7 Polarization: -72.02 SS G_CDS: -0.03 Total: -72.05 kcal Atomic # 8 Polarization: -21.18 SS G_CDS: -0.36 Total: -21.55 kcal Atomic # 14 Polarization: 23.06 SS G_CDS: -4.71 Total: 18.35 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -37.13 -8.06 -45.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676554607.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.945 kcal (2) G-P(sol) polarization free energy of solvation -37.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds