Wall clock time and date at job start Tue Mar 31 2020 04:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30177 * 125.09362 * 2 1 4 4 C 1.34887 * 109.73622 * 179.97438 * 3 2 1 5 5 C 1.46297 * 126.49604 * 179.97438 * 4 3 2 6 6 O 1.21771 * 120.00034 * 180.02562 * 5 4 3 7 7 N 1.34776 * 119.99849 * 0.02562 * 5 4 3 8 8 C 1.46500 * 119.99923 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.47226 * 180.02562 * 8 7 5 10 10 H 1.09004 * 109.47434 * 64.99688 * 9 8 7 11 11 C 1.52997 * 109.47114 * 184.99495 * 9 8 7 12 12 O 1.42903 * 109.47059 * 55.00009 * 11 9 8 13 13 N 1.46498 * 109.46963 * 304.99288 * 9 8 7 14 14 C 1.36943 * 119.99752 * 154.72381 * 13 9 8 15 15 H 1.08002 * 119.99793 * 0.27665 * 14 13 9 16 16 C 1.38811 * 120.00012 * 180.27737 * 14 13 9 17 17 N 1.31611 * 120.00081 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 119.99814 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.47483 * 90.00178 * 18 16 14 20 20 H 1.48498 * 109.47011 * 210.00042 * 18 16 14 21 21 H 1.48502 * 109.47495 * 329.99664 * 18 16 14 22 22 C 1.40140 * 107.00774 * 0.23825 * 4 3 2 23 23 C 1.40177 * 133.57823 * 179.75820 * 22 4 3 24 24 C 1.36333 * 119.20226 * 180.02562 * 23 22 4 25 25 C 1.40395 * 119.55534 * 0.02562 * 24 23 22 26 26 C 1.35032 * 120.44234 * 359.63202 * 25 24 23 27 27 N 1.36250 * 125.08973 * 179.97438 * 2 1 3 28 28 H 1.09002 * 109.47378 * 90.02270 * 1 2 3 29 29 H 1.09005 * 109.47255 * 210.02840 * 1 2 3 30 30 H 1.09000 * 109.46832 * 330.02355 * 1 2 3 31 31 H 0.96998 * 119.99957 * 0.02562 * 7 5 4 32 32 H 1.08995 * 109.47176 * 59.99567 * 8 7 5 33 33 H 1.09008 * 109.46559 * 299.99697 * 8 7 5 34 34 H 1.08997 * 109.47241 * 175.00015 * 11 9 8 35 35 H 1.09002 * 109.47280 * 295.00109 * 11 9 8 36 36 H 0.96700 * 113.99965 * 180.02562 * 12 11 9 37 37 H 0.97001 * 120.00384 * 335.00737 * 13 9 8 38 38 H 0.97008 * 120.00329 * 179.97438 * 17 16 14 39 39 H 1.08006 * 120.39962 * 0.02562 * 23 22 4 40 40 H 1.07998 * 120.22396 * 179.97438 * 24 23 22 41 41 H 1.08003 * 119.77634 * 179.97438 * 25 24 23 42 42 H 1.08000 * 119.69668 * 179.89286 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2553 1.0651 0.0000 4 6 3.5560 0.7079 0.0006 5 6 4.7066 1.6115 0.0002 6 8 5.8368 1.1583 0.0004 7 7 4.5156 2.9457 -0.0002 8 6 5.6677 3.8506 -0.0011 9 6 5.1778 5.3000 -0.0008 10 1 4.6506 5.5053 0.9309 11 6 6.3757 6.2433 -0.1274 12 8 7.1332 5.8981 -1.2889 13 7 4.2702 5.5089 -1.1317 14 6 3.3239 6.4973 -1.0766 15 1 3.2496 7.1256 -0.2013 16 6 2.4601 6.6915 -2.1457 17 7 1.5510 7.6417 -2.0930 18 14 2.5881 5.6042 -3.6593 19 1 1.7140 4.4157 -3.4904 20 1 2.1569 6.3697 -4.8565 21 1 3.9952 5.1630 -3.8343 22 6 3.5964 -0.6929 -0.0046 23 6 4.6393 -1.6296 -0.0109 24 6 4.3390 -2.9594 -0.0154 25 6 2.9952 -3.3659 -0.0143 26 6 2.0033 -2.4497 -0.0013 27 7 2.2902 -1.1149 0.0005 28 1 -0.3634 -0.0004 -1.0277 29 1 -0.3634 -0.8898 0.5143 30 1 -0.3633 0.8902 0.5135 31 1 3.6153 3.3067 0.0001 32 1 6.2704 3.6705 -0.8912 33 1 6.2712 3.6712 0.8888 34 1 6.0217 7.2703 -0.2165 35 1 7.0055 6.1516 0.7576 36 1 7.9100 6.4559 -1.4320 37 1 4.3368 4.9445 -1.9178 38 1 0.9476 7.7777 -2.8403 39 1 5.6684 -1.3017 -0.0121 40 1 5.1295 -3.6952 -0.0207 41 1 2.7532 -4.4185 -0.0183 42 1 0.9737 -2.7758 -0.0023 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001676554607.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:23:13 Heat of formation + Delta-G solvation = -13.070228 kcal Electronic energy + Delta-G solvation = -26420.709728 eV Core-core repulsion = 22594.256986 eV Total energy + Delta-G solvation = -3826.452742 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.94576 -40.52808 -38.71514 -38.48693 -36.45817 -35.21984 -34.64826 -33.38808 -32.57758 -31.20445 -30.55945 -28.24813 -26.59036 -25.35033 -24.89319 -24.13230 -22.21545 -21.71260 -21.28232 -19.91462 -18.90149 -18.31529 -17.98246 -17.38051 -17.33575 -17.01071 -16.59833 -16.44954 -16.06117 -15.88174 -15.45570 -15.05485 -14.92609 -14.70293 -14.47096 -14.32669 -14.20627 -14.06825 -13.47228 -13.22882 -13.11467 -12.90400 -12.69009 -12.66582 -12.61795 -12.40749 -11.89599 -11.81415 -11.71782 -11.63135 -11.19218 -11.00584 -10.75824 -10.42804 -10.08492 -9.34105 -8.52906 -8.03016 -5.34174 -0.39098 0.04783 1.18328 1.34442 1.36288 1.40088 1.42854 2.23064 2.28042 2.46129 2.55492 3.20391 3.28964 3.40442 3.45582 3.66413 3.68290 3.75074 3.88441 3.93213 4.13678 4.15212 4.36789 4.50111 4.50341 4.59068 4.66824 4.70923 4.77189 4.81670 4.96667 4.97494 5.10380 5.14176 5.21938 5.27742 5.44910 5.54056 5.75876 6.08608 6.21066 6.42325 6.72042 7.02628 7.07893 7.19602 7.81599 8.00760 9.18205 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.013515 B = 0.004005 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.313561 B = 6989.391259 C = 8387.531627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.161 3.839 3 N -0.450 5.450 4 C -0.123 4.123 5 C 0.598 3.402 6 O -0.581 6.581 7 N -0.708 5.708 8 C 0.128 3.872 9 C 0.165 3.835 10 H 0.078 0.922 11 C 0.069 3.931 12 O -0.583 6.583 13 N -0.741 5.741 14 C -0.221 4.221 15 H 0.070 0.930 16 C -0.049 4.049 17 N -0.977 5.977 18 Si 0.939 3.061 19 H -0.284 1.284 20 H -0.293 1.293 21 H -0.270 1.270 22 C 0.077 3.923 23 C -0.118 4.118 24 C -0.078 4.078 25 C -0.129 4.129 26 C 0.050 3.950 27 N -0.364 5.364 28 H 0.091 0.909 29 H 0.112 0.888 30 H 0.089 0.911 31 H 0.410 0.590 32 H 0.060 0.940 33 H 0.084 0.916 34 H 0.037 0.963 35 H 0.072 0.928 36 H 0.388 0.612 37 H 0.361 0.639 38 H 0.257 0.743 39 H 0.142 0.858 40 H 0.176 0.824 41 H 0.202 0.798 42 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.224 -26.480 6.842 27.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.097 4.097 3 N -0.165 5.165 4 C -0.254 4.254 5 C 0.387 3.613 6 O -0.463 6.463 7 N -0.358 5.358 8 C 0.004 3.996 9 C 0.056 3.944 10 H 0.096 0.904 11 C -0.012 4.012 12 O -0.390 6.390 13 N -0.384 5.384 14 C -0.352 4.352 15 H 0.088 0.912 16 C -0.241 4.241 17 N -0.628 5.628 18 Si 0.769 3.231 19 H -0.211 1.211 20 H -0.220 1.220 21 H -0.195 1.195 22 C -0.037 4.037 23 C -0.137 4.137 24 C -0.099 4.099 25 C -0.149 4.149 26 C -0.071 4.071 27 N -0.034 5.034 28 H 0.110 0.890 29 H 0.131 0.869 30 H 0.107 0.893 31 H 0.246 0.754 32 H 0.079 0.921 33 H 0.102 0.898 34 H 0.056 0.944 35 H 0.090 0.910 36 H 0.237 0.763 37 H 0.194 0.806 38 H 0.066 0.934 39 H 0.160 0.840 40 H 0.194 0.806 41 H 0.218 0.782 42 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 2.008 -26.133 6.888 27.100 hybrid contribution 0.307 0.237 -1.114 1.179 sum 2.315 -25.896 5.774 26.633 Atomic orbital electron populations 1.20404 0.80779 1.05866 1.04900 1.24146 0.97202 0.78457 1.09883 1.69979 1.01854 1.29766 1.14933 1.20362 0.91453 0.90868 1.22738 1.16784 0.86792 0.81938 0.75782 1.90707 1.24092 1.77357 1.54144 1.45837 1.11352 1.05204 1.73377 1.21498 0.87641 0.88138 1.02324 1.20831 0.90012 0.91961 0.91571 0.90410 1.22761 0.92817 0.97894 0.87737 1.86480 1.43870 1.61279 1.47411 1.42716 1.38620 1.39526 1.17542 1.19050 1.06767 1.07888 1.01490 0.91199 1.25189 0.98353 0.99859 1.00692 1.69829 1.23791 1.36050 1.33095 0.85642 0.77840 0.78764 0.80855 1.21113 1.22008 1.19529 1.19462 0.85818 0.93743 1.04699 1.20824 0.98039 0.92659 1.02226 1.21785 0.98793 0.94646 0.94699 1.21554 0.90909 1.02136 1.00314 1.22714 1.04441 0.78417 1.01559 1.43125 1.06683 1.07960 1.45654 0.89039 0.86907 0.89268 0.75421 0.92143 0.89760 0.94416 0.91010 0.76325 0.80647 0.93404 0.83981 0.80616 0.78153 0.77053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.01 10.32 71.23 0.74 -0.27 16 2 C 0.16 4.34 7.94 137.83 1.09 5.44 16 3 N -0.45 -16.45 10.90 -175.25 -1.91 -18.36 16 4 C -0.12 -4.63 7.05 41.23 0.29 -4.34 16 5 C 0.60 24.57 7.77 86.34 0.67 25.24 16 6 O -0.58 -24.97 15.75 -4.58 -0.07 -25.05 16 7 N -0.71 -28.64 5.38 -467.40 -2.52 -31.15 16 8 C 0.13 4.82 5.12 86.38 0.44 5.26 16 9 C 0.16 6.50 2.84 44.99 0.13 6.62 16 10 H 0.08 3.01 8.08 -2.39 -0.02 2.99 16 11 C 0.07 2.32 6.86 71.98 0.49 2.82 16 12 O -0.58 -19.87 12.64 -148.98 -1.88 -21.75 16 13 N -0.74 -36.25 4.31 -322.94 -1.39 -37.64 16 14 C -0.22 -12.67 10.41 84.03 0.87 -11.79 16 15 H 0.07 4.25 8.06 -2.91 -0.02 4.23 16 16 C -0.05 -2.95 5.50 84.86 0.47 -2.48 16 17 N -0.98 -63.15 13.97 21.65 0.30 -62.85 16 18 Si 0.94 49.16 27.74 68.60 1.90 51.06 16 19 H -0.28 -14.82 7.11 99.48 0.71 -14.11 16 20 H -0.29 -15.27 7.11 99.48 0.71 -14.56 16 21 H -0.27 -13.72 6.52 99.48 0.65 -13.07 16 22 C 0.08 2.34 6.72 39.23 0.26 2.60 16 23 C -0.12 -2.83 9.73 22.30 0.22 -2.61 16 24 C -0.08 -1.02 10.08 22.35 0.23 -0.79 16 25 C -0.13 -1.04 9.98 22.06 0.22 -0.82 16 26 C 0.05 0.57 10.77 83.22 0.90 1.47 16 27 N -0.36 -8.43 2.94 -337.21 -0.99 -9.42 16 28 H 0.09 1.34 8.14 -2.39 -0.02 1.33 16 29 H 0.11 0.88 7.99 -2.38 -0.02 0.86 16 30 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.41 17.59 7.84 -92.71 -0.73 16.87 16 32 H 0.06 2.48 7.39 -2.39 -0.02 2.46 16 33 H 0.08 2.84 8.14 -2.38 -0.02 2.82 16 34 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.39 9.09 9.12 -74.06 -0.68 8.42 16 37 H 0.36 18.41 5.66 -92.71 -0.52 17.88 16 38 H 0.26 15.93 8.31 -92.70 -0.77 15.16 16 39 H 0.14 3.79 7.17 -2.91 -0.02 3.77 16 40 H 0.18 1.05 8.06 -2.91 -0.02 1.02 16 41 H 0.20 -0.31 8.06 -2.91 -0.02 -0.33 16 42 H 0.21 0.42 7.94 -2.91 -0.02 0.40 16 Total: -1.00 -87.39 359.85 -0.44 -87.83 By element: Atomic # 1 Polarization: 41.89 SS G_CDS: -0.90 Total: 40.98 kcal Atomic # 6 Polarization: 19.32 SS G_CDS: 7.02 Total: 26.34 kcal Atomic # 7 Polarization: -152.91 SS G_CDS: -6.51 Total: -159.42 kcal Atomic # 8 Polarization: -44.84 SS G_CDS: -1.95 Total: -46.80 kcal Atomic # 14 Polarization: 49.16 SS G_CDS: 1.90 Total: 51.06 kcal Total: -87.39 -0.44 -87.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676554607.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.758 kcal (2) G-P(sol) polarization free energy of solvation -87.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds