Wall clock time and date at job start Tue Mar 31 2020 05:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35900 * 116.99893 * 2 1 4 4 C 1.38764 * 120.05488 * 0.02562 * 3 2 1 5 5 C 1.38119 * 119.94332 * 180.02562 * 4 3 2 6 6 C 1.38290 * 120.05870 * 0.02562 * 5 4 3 7 7 C 1.38238 * 120.10880 * 0.02562 * 6 5 4 8 8 C 1.50707 * 119.97123 * 179.97438 * 7 6 5 9 9 H 1.09000 * 110.45850 * 197.58247 * 8 7 6 10 10 C 1.54379 * 110.40918 * 75.17095 * 8 7 6 11 11 C 1.54259 * 105.05982 * 217.36622 * 10 8 7 12 12 C 1.54385 * 105.06148 * 0.02562 * 11 10 8 13 13 N 1.48554 * 110.41010 * 319.99842 * 8 7 6 14 14 C 1.46896 * 111.00068 * 277.81871 * 13 8 7 15 15 C 1.50702 * 109.47492 * 170.00107 * 14 13 8 16 16 O 1.21282 * 119.99684 * 0.02562 * 15 14 13 17 17 N 1.34769 * 120.00466 * 179.97438 * 15 14 13 18 18 C 1.46500 * 120.00241 * 179.97438 * 17 15 14 19 19 C 1.50706 * 109.46949 * 180.02562 * 18 17 15 20 20 H 1.07995 * 120.00167 * 359.72205 * 19 18 17 21 21 C 1.37879 * 119.99394 * 179.97438 * 19 18 17 22 22 N 1.31514 * 120.00338 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99424 * 180.02562 * 21 19 18 24 24 H 1.48490 * 109.47405 * 60.00219 * 23 21 19 25 25 H 1.48503 * 109.46845 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47399 * 299.99813 * 23 21 19 27 27 C 1.38167 * 120.06166 * 0.22890 * 7 6 5 28 28 H 1.09004 * 109.46932 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47608 * 299.99304 * 1 2 3 30 30 H 1.08998 * 109.47873 * 59.99637 * 1 2 3 31 31 H 1.07996 * 120.02502 * 359.97438 * 4 3 2 32 32 H 1.08003 * 119.97231 * 179.97438 * 5 4 3 33 33 H 1.07996 * 119.94647 * 179.97438 * 6 5 4 34 34 H 1.08998 * 110.32560 * 336.26561 * 10 8 7 35 35 H 1.08997 * 110.32454 * 98.47367 * 10 8 7 36 36 H 1.09000 * 110.32050 * 118.89301 * 11 10 8 37 37 H 1.08993 * 110.32685 * 241.00219 * 11 10 8 38 38 H 1.08996 * 110.40889 * 265.07312 * 12 11 10 39 39 H 1.08997 * 110.41359 * 142.62571 * 12 11 10 40 40 H 1.09004 * 109.47535 * 50.00001 * 14 13 8 41 41 H 1.09004 * 109.47041 * 290.00040 * 14 13 8 42 42 H 0.97010 * 119.99849 * 0.02562 * 17 15 14 43 43 H 1.09000 * 109.47175 * 60.00333 * 18 17 15 44 44 H 1.09001 * 109.47297 * 299.99840 * 18 17 15 45 45 H 0.96996 * 119.99730 * 179.97438 * 22 21 19 46 46 H 1.07998 * 120.03778 * 179.74524 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2912 2.3754 0.0005 5 6 1.9206 3.6048 0.0000 6 6 3.3017 3.6759 -0.0016 7 6 4.0557 2.5173 -0.0032 8 6 5.5606 2.5984 -0.0055 9 1 5.9930 1.6469 -0.3151 10 6 6.0805 2.9967 1.3925 11 6 7.2810 3.9272 1.1236 12 6 7.3852 4.0135 -0.4143 13 7 6.0191 3.6916 -0.9008 14 6 6.0496 3.2477 -2.3008 15 6 6.2780 4.4356 -3.1997 16 8 6.4036 5.5429 -2.7211 17 7 6.3439 4.2673 -4.5352 18 6 6.5654 5.4221 -5.4090 19 6 6.5968 4.9666 -6.8452 20 1 6.4694 3.9208 -7.0830 21 6 6.7933 5.8843 -7.8553 22 7 6.9538 7.1570 -7.5654 23 14 6.8315 5.3198 -9.6355 24 1 5.5368 4.6794 -9.9797 25 1 7.0562 6.4904 -10.5212 26 1 7.9328 4.3409 -9.8209 27 6 3.4310 1.2850 -0.0080 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3635 0.5139 -0.8899 31 1 0.2126 2.3203 0.0005 32 1 1.3337 4.5114 0.0000 33 1 3.7920 4.6382 -0.0024 34 1 5.3067 3.5276 1.9470 35 1 6.4025 2.1126 1.9426 36 1 7.0965 4.9149 1.5461 37 1 8.1920 3.5007 1.5433 38 1 8.1031 3.2834 -0.7882 39 1 7.6708 5.0199 -0.7202 40 1 5.0991 2.7780 -2.5539 41 1 6.8576 2.5288 -2.4364 42 1 6.2438 3.3815 -4.9180 43 1 7.5155 5.8924 -5.1558 44 1 5.7568 6.1405 -5.2737 45 1 7.0924 7.8025 -8.2760 46 1 4.0205 0.3801 -0.0134 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044894484.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:26 Heat of formation + Delta-G solvation = -43.901919 kcal Electronic energy + Delta-G solvation = -26356.061343 eV Core-core repulsion = 22631.811982 eV Total energy + Delta-G solvation = -3724.249361 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.45859 -39.47326 -38.21133 -36.99897 -34.09876 -32.42202 -32.10127 -31.88383 -30.48132 -27.88474 -27.82201 -27.29641 -25.78568 -22.79454 -22.63894 -22.22802 -20.97828 -20.20200 -19.54689 -17.93603 -17.07909 -16.47380 -16.09291 -15.92466 -15.79490 -15.66730 -15.33620 -14.85884 -14.80247 -14.28146 -13.99173 -13.70355 -13.38598 -13.20730 -13.14790 -12.89208 -12.52144 -12.21844 -12.14632 -11.98710 -11.87965 -11.76137 -11.39814 -11.17802 -11.09942 -11.06985 -10.96862 -10.89238 -10.80999 -10.53108 -10.29063 -9.38334 -9.03044 -8.89877 -8.70106 -8.35676 -8.23528 -7.81048 -6.14358 -4.21134 1.21255 1.43165 3.06145 3.26485 3.31154 3.32670 3.46480 3.61772 3.80708 4.26827 4.39979 4.63865 4.65708 4.67156 4.84890 4.87326 4.89730 4.97469 5.08281 5.16098 5.19692 5.21499 5.37761 5.39573 5.42242 5.44730 5.56774 5.60455 5.62868 5.71532 5.78819 5.91371 5.97257 6.10722 6.20585 6.22853 6.45638 6.57214 6.68897 6.92522 6.98818 7.26578 7.36004 7.50484 7.56057 7.71062 8.00292 8.68802 8.82714 9.18802 9.45762 10.95835 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.012326 B = 0.002988 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2270.993052 B = 9367.643617 C =10909.249228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.321 6.321 3 C 0.119 3.881 4 C -0.209 4.209 5 C -0.085 4.085 6 C -0.119 4.119 7 C -0.035 4.035 8 C 0.098 3.902 9 H 0.061 0.939 10 C -0.112 4.112 11 C -0.123 4.123 12 C 0.034 3.966 13 N -0.479 5.479 14 C 0.024 3.976 15 C 0.501 3.499 16 O -0.538 6.538 17 N -0.717 5.717 18 C 0.253 3.747 19 C -0.543 4.543 20 H 0.062 0.938 21 C 0.064 3.936 22 N -0.886 5.886 23 Si 0.903 3.097 24 H -0.275 1.275 25 H -0.285 1.285 26 H -0.275 1.275 27 C -0.148 4.148 28 H 0.097 0.903 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.124 0.876 32 H 0.124 0.876 33 H 0.136 0.864 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.041 0.959 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.060 0.940 42 H 0.389 0.611 43 H 0.025 0.975 44 H 0.026 0.974 45 H 0.266 0.734 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.383 -13.978 19.242 25.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.234 6.234 3 C 0.074 3.926 4 C -0.228 4.228 5 C -0.103 4.103 6 C -0.137 4.137 7 C -0.035 4.035 8 C -0.010 4.010 9 H 0.079 0.921 10 C -0.150 4.150 11 C -0.161 4.161 12 C -0.093 4.093 13 N -0.203 5.203 14 C -0.108 4.108 15 C 0.285 3.715 16 O -0.415 6.415 17 N -0.366 5.366 18 C 0.132 3.868 19 C -0.582 4.582 20 H 0.080 0.920 21 C -0.140 4.140 22 N -0.523 5.523 23 Si 0.730 3.270 24 H -0.201 1.201 25 H -0.211 1.211 26 H -0.201 1.201 27 C -0.168 4.168 28 H 0.116 0.884 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.142 0.858 32 H 0.142 0.858 33 H 0.154 0.846 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.086 0.914 38 H 0.059 0.941 39 H 0.115 0.885 40 H 0.115 0.885 41 H 0.078 0.922 42 H 0.221 0.779 43 H 0.043 0.957 44 H 0.044 0.956 45 H 0.076 0.924 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -8.517 -12.683 19.480 24.757 hybrid contribution 0.132 -1.291 -1.466 1.957 sum -8.385 -13.974 18.015 24.292 Atomic orbital electron populations 1.23019 0.78585 1.03714 1.01332 1.86045 1.21219 1.27134 1.89040 1.18899 0.92159 0.84036 0.97488 1.21217 0.99789 0.92530 1.09260 1.21005 0.94856 0.96877 0.97567 1.21058 0.92994 0.99177 1.00464 1.19410 0.94373 0.92149 0.97598 1.21566 0.91121 0.94231 0.94073 0.92071 1.22316 0.98091 0.99507 0.95119 1.22307 0.97676 1.00342 0.95786 1.23186 0.89029 1.02870 0.94228 1.65027 1.21716 1.33332 1.00195 1.22206 1.02753 0.96238 0.89556 1.20206 0.78083 0.90030 0.83163 1.90641 1.49864 1.25920 1.75110 1.46445 1.71562 1.12858 1.05753 1.19053 0.97039 0.83385 0.87310 1.21205 1.51803 0.94424 0.90735 0.92006 1.24949 0.94758 0.94729 0.99566 1.69965 1.47692 1.01347 1.33321 0.86484 0.78647 0.78138 0.83690 1.20063 1.21074 1.20097 1.20217 0.91316 0.97964 1.07265 0.88426 0.92801 0.92649 0.85841 0.85810 0.84601 0.90619 0.91187 0.90783 0.91409 0.94107 0.88456 0.88490 0.92175 0.77924 0.95691 0.95613 0.92417 0.85584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.32 -3.47 10.50 -19.43 -0.20 -3.67 16 3 C 0.12 1.38 6.69 -39.21 -0.26 1.12 16 4 C -0.21 -2.26 9.04 -39.43 -0.36 -2.62 16 5 C -0.08 -0.97 10.04 -39.61 -0.40 -1.37 16 6 C -0.12 -1.50 9.15 -39.56 -0.36 -1.86 16 7 C -0.03 -0.42 4.53 -104.64 -0.47 -0.89 16 8 C 0.10 1.12 2.45 -67.22 -0.16 0.96 16 9 H 0.06 0.64 7.88 -51.93 -0.41 0.24 16 10 C -0.11 -1.10 6.52 -25.35 -0.17 -1.27 16 11 C -0.12 -1.27 7.00 -25.35 -0.18 -1.44 16 12 C 0.03 0.46 5.92 -2.19 -0.01 0.44 16 13 N -0.48 -6.79 3.96 -224.95 -0.89 -7.68 16 14 C 0.02 0.36 5.26 -4.98 -0.03 0.34 16 15 C 0.50 10.16 7.68 -10.99 -0.08 10.07 16 16 O -0.54 -12.97 15.22 5.56 0.08 -12.88 16 17 N -0.72 -15.36 5.55 -61.47 -0.34 -15.70 16 18 C 0.25 6.80 5.43 -5.19 -0.03 6.77 16 19 C -0.54 -14.92 9.28 -34.44 -0.32 -15.24 16 20 H 0.06 1.58 7.60 -52.49 -0.40 1.19 16 21 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 22 N -0.89 -26.34 13.29 55.43 0.74 -25.61 16 23 Si 0.90 21.03 29.54 -169.99 -5.02 16.00 16 24 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 25 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 26 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 27 C -0.15 -1.72 9.62 -39.43 -0.38 -2.10 16 28 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.05 0.31 7.66 -51.93 -0.40 -0.08 16 30 H 0.05 0.35 7.66 -51.93 -0.40 -0.04 16 31 H 0.12 1.06 6.30 -52.49 -0.33 0.73 16 32 H 0.12 1.20 8.06 -52.48 -0.42 0.77 16 33 H 0.14 1.88 7.75 -52.49 -0.41 1.47 16 34 H 0.08 0.76 7.71 -51.93 -0.40 0.36 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.04 0.51 7.75 -51.93 -0.40 0.11 16 39 H 0.10 1.56 7.24 -51.93 -0.38 1.18 16 40 H 0.10 1.37 7.78 -51.93 -0.40 0.97 16 41 H 0.06 0.78 7.77 -51.93 -0.40 0.38 16 42 H 0.39 7.17 8.32 -40.82 -0.34 6.83 16 43 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 46 H 0.13 1.30 8.04 -52.49 -0.42 0.88 16 LS Contribution 377.91 15.07 5.70 5.70 Total: -1.00 -33.12 377.91 -9.44 -42.56 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -7.18 Total: 5.50 kcal Atomic # 6 Polarization: -1.90 SS G_CDS: -2.32 Total: -4.21 kcal Atomic # 7 Polarization: -48.49 SS G_CDS: -0.50 Total: -48.99 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: -0.12 Total: -16.55 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.12 -9.44 -42.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044894484.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.341 kcal (2) G-P(sol) polarization free energy of solvation -33.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds