Wall clock time and date at job start Tue Mar 31 2020 05:23:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35900 * 116.99893 * 2 1 4 4 C 1.38764 * 120.05488 * 0.02562 * 3 2 1 5 5 C 1.38119 * 119.94332 * 180.02562 * 4 3 2 6 6 C 1.38290 * 120.05870 * 0.02562 * 5 4 3 7 7 C 1.38238 * 120.10880 * 0.02562 * 6 5 4 8 8 C 1.50707 * 119.97123 * 179.97438 * 7 6 5 9 9 H 1.09000 * 110.45850 * 197.58247 * 8 7 6 10 10 C 1.54379 * 110.40918 * 75.17095 * 8 7 6 11 11 C 1.54259 * 105.05982 * 217.36622 * 10 8 7 12 12 C 1.54385 * 105.06148 * 0.02562 * 11 10 8 13 13 N 1.48554 * 110.41010 * 319.99842 * 8 7 6 14 14 C 1.46896 * 111.00068 * 277.81871 * 13 8 7 15 15 C 1.50702 * 109.47492 * 170.00107 * 14 13 8 16 16 O 1.21282 * 119.99684 * 0.02562 * 15 14 13 17 17 N 1.34769 * 120.00466 * 179.97438 * 15 14 13 18 18 C 1.46500 * 120.00241 * 179.97438 * 17 15 14 19 19 C 1.50706 * 109.46949 * 180.02562 * 18 17 15 20 20 H 1.07995 * 120.00167 * 359.72205 * 19 18 17 21 21 C 1.37879 * 119.99394 * 179.97438 * 19 18 17 22 22 N 1.31514 * 120.00338 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99424 * 180.02562 * 21 19 18 24 24 H 1.48490 * 109.47405 * 60.00219 * 23 21 19 25 25 H 1.48503 * 109.46845 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47399 * 299.99813 * 23 21 19 27 27 C 1.38167 * 120.06166 * 0.22890 * 7 6 5 28 28 H 1.09004 * 109.46932 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47608 * 299.99304 * 1 2 3 30 30 H 1.08998 * 109.47873 * 59.99637 * 1 2 3 31 31 H 1.07996 * 120.02502 * 359.97438 * 4 3 2 32 32 H 1.08003 * 119.97231 * 179.97438 * 5 4 3 33 33 H 1.07996 * 119.94647 * 179.97438 * 6 5 4 34 34 H 1.08998 * 110.32560 * 336.26561 * 10 8 7 35 35 H 1.08997 * 110.32454 * 98.47367 * 10 8 7 36 36 H 1.09000 * 110.32050 * 118.89301 * 11 10 8 37 37 H 1.08993 * 110.32685 * 241.00219 * 11 10 8 38 38 H 1.08996 * 110.40889 * 265.07312 * 12 11 10 39 39 H 1.08997 * 110.41359 * 142.62571 * 12 11 10 40 40 H 1.09004 * 109.47535 * 50.00001 * 14 13 8 41 41 H 1.09004 * 109.47041 * 290.00040 * 14 13 8 42 42 H 0.97010 * 119.99849 * 0.02562 * 17 15 14 43 43 H 1.09000 * 109.47175 * 60.00333 * 18 17 15 44 44 H 1.09001 * 109.47297 * 299.99840 * 18 17 15 45 45 H 0.96996 * 119.99730 * 179.97438 * 22 21 19 46 46 H 1.07998 * 120.03778 * 179.74524 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2912 2.3754 0.0005 5 6 1.9206 3.6048 0.0000 6 6 3.3017 3.6759 -0.0016 7 6 4.0557 2.5173 -0.0032 8 6 5.5606 2.5984 -0.0055 9 1 5.9930 1.6469 -0.3151 10 6 6.0805 2.9967 1.3925 11 6 7.2810 3.9272 1.1236 12 6 7.3852 4.0135 -0.4143 13 7 6.0191 3.6916 -0.9008 14 6 6.0496 3.2477 -2.3008 15 6 6.2780 4.4356 -3.1997 16 8 6.4036 5.5429 -2.7211 17 7 6.3439 4.2673 -4.5352 18 6 6.5654 5.4221 -5.4090 19 6 6.5968 4.9666 -6.8452 20 1 6.4694 3.9208 -7.0830 21 6 6.7933 5.8843 -7.8553 22 7 6.9538 7.1570 -7.5654 23 14 6.8315 5.3198 -9.6355 24 1 5.5368 4.6794 -9.9797 25 1 7.0562 6.4904 -10.5212 26 1 7.9328 4.3409 -9.8209 27 6 3.4310 1.2850 -0.0080 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3635 0.5139 -0.8899 31 1 0.2126 2.3203 0.0005 32 1 1.3337 4.5114 0.0000 33 1 3.7920 4.6382 -0.0024 34 1 5.3067 3.5276 1.9470 35 1 6.4025 2.1126 1.9426 36 1 7.0965 4.9149 1.5461 37 1 8.1920 3.5007 1.5433 38 1 8.1031 3.2834 -0.7882 39 1 7.6708 5.0199 -0.7202 40 1 5.0991 2.7780 -2.5539 41 1 6.8576 2.5288 -2.4364 42 1 6.2438 3.3815 -4.9180 43 1 7.5155 5.8924 -5.1558 44 1 5.7568 6.1405 -5.2737 45 1 7.0924 7.8025 -8.2760 46 1 4.0205 0.3801 -0.0134 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044894484.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:25 Heat of formation + Delta-G solvation = -66.498048 kcal Electronic energy + Delta-G solvation = -26357.041185 eV Core-core repulsion = 22631.811982 eV Total energy + Delta-G solvation = -3725.229203 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -41.37131 -40.65167 -39.55752 -37.90049 -36.08577 -34.34689 -33.32119 -32.76957 -31.29634 -29.72694 -28.68904 -27.96018 -27.29769 -24.52441 -23.50974 -23.37275 -22.03644 -21.24815 -21.05444 -18.98421 -18.68896 -17.52954 -17.37434 -17.06088 -16.88544 -16.60275 -16.51845 -16.46992 -16.21210 -15.65638 -15.21769 -14.73588 -14.64180 -14.39390 -14.11333 -14.01975 -13.86603 -13.66410 -13.60415 -13.13076 -12.91008 -12.89154 -12.74283 -12.68106 -12.28564 -12.25581 -12.22209 -12.04807 -11.83485 -11.70471 -11.51320 -11.35465 -10.79177 -10.69968 -9.80511 -9.76724 -9.43993 -9.09301 -8.29244 -6.46137 0.35313 0.54394 1.42267 1.46607 1.54768 1.81913 2.25069 2.36849 2.49001 2.80486 3.05274 3.13633 3.67248 3.74256 3.90363 3.94624 4.04333 4.16625 4.21791 4.27671 4.32630 4.36570 4.39900 4.41411 4.48912 4.58940 4.63638 4.73798 4.76457 4.79200 5.01360 5.07210 5.08284 5.11447 5.23402 5.24605 5.28598 5.36038 5.49190 5.55439 5.63981 5.70473 5.81721 5.85201 5.92190 6.04082 6.49128 6.64932 6.96072 7.23512 7.54370 8.82818 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.012326 B = 0.002988 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2270.993052 B = 9367.643617 C =10909.249228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.334 6.334 3 C 0.113 3.887 4 C -0.211 4.211 5 C -0.092 4.092 6 C -0.138 4.138 7 C -0.038 4.038 8 C 0.102 3.898 9 H 0.080 0.920 10 C -0.106 4.106 11 C -0.115 4.115 12 C 0.032 3.968 13 N -0.502 5.502 14 C 0.041 3.959 15 C 0.498 3.502 16 O -0.582 6.582 17 N -0.712 5.712 18 C 0.271 3.729 19 C -0.557 4.557 20 H 0.083 0.917 21 C 0.004 3.996 22 N -0.931 5.931 23 Si 0.985 3.015 24 H -0.262 1.262 25 H -0.285 1.285 26 H -0.261 1.261 27 C -0.154 4.154 28 H 0.119 0.881 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.145 0.855 32 H 0.135 0.865 33 H 0.115 0.885 34 H 0.069 0.931 35 H 0.096 0.904 36 H 0.065 0.935 37 H 0.092 0.908 38 H 0.053 0.947 39 H 0.058 0.942 40 H 0.111 0.889 41 H 0.090 0.910 42 H 0.406 0.594 43 H -0.014 1.014 44 H -0.016 1.016 45 H 0.269 0.731 46 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.067 -17.367 19.273 27.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.249 6.249 3 C 0.067 3.933 4 C -0.229 4.229 5 C -0.111 4.111 6 C -0.157 4.157 7 C -0.038 4.038 8 C -0.006 4.006 9 H 0.098 0.902 10 C -0.144 4.144 11 C -0.153 4.153 12 C -0.096 4.096 13 N -0.227 5.227 14 C -0.091 4.091 15 C 0.284 3.716 16 O -0.462 6.462 17 N -0.363 5.363 18 C 0.148 3.852 19 C -0.595 4.595 20 H 0.101 0.899 21 C -0.196 4.196 22 N -0.570 5.570 23 Si 0.808 3.192 24 H -0.187 1.187 25 H -0.210 1.210 26 H -0.186 1.186 27 C -0.173 4.173 28 H 0.137 0.863 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.163 0.837 32 H 0.153 0.847 33 H 0.133 0.867 34 H 0.088 0.912 35 H 0.114 0.886 36 H 0.084 0.916 37 H 0.110 0.890 38 H 0.071 0.929 39 H 0.077 0.923 40 H 0.129 0.871 41 H 0.108 0.892 42 H 0.242 0.758 43 H 0.004 0.996 44 H 0.002 0.998 45 H 0.078 0.922 46 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -9.217 -16.128 19.539 26.960 hybrid contribution 0.273 -0.210 -1.393 1.435 sum -8.944 -16.338 18.147 26.004 Atomic orbital electron populations 1.23308 0.76675 1.05459 1.02074 1.86030 1.23251 1.26721 1.88852 1.19088 0.92484 0.84603 0.97079 1.21442 1.00964 0.91957 1.08549 1.21191 0.94587 0.97876 0.97398 1.21005 0.93768 0.98726 1.02190 1.19454 0.94648 0.92064 0.97657 1.21639 0.90843 0.93944 0.94161 0.90201 1.22319 0.97467 1.00265 0.94361 1.22269 0.99152 1.00482 0.93423 1.23136 0.88967 1.00998 0.96459 1.64929 1.22412 1.35286 1.00036 1.22053 1.04423 0.93554 0.89052 1.21230 0.76175 0.91198 0.82973 1.90624 1.51421 1.28394 1.75776 1.46198 1.71924 1.12173 1.06022 1.18471 0.93435 0.84433 0.88858 1.21600 1.51616 0.95555 0.90748 0.89885 1.26078 0.93855 0.94596 1.05078 1.70136 1.48709 1.02995 1.35139 0.85209 0.79459 0.77779 0.76783 1.18674 1.21038 1.18583 1.20378 0.91706 0.98136 1.07126 0.86322 0.91707 0.92203 0.83714 0.84725 0.86692 0.91187 0.88557 0.91577 0.88991 0.92912 0.92319 0.87076 0.89210 0.75836 0.99600 0.99825 0.92240 0.84215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 113.37 1.11 1.33 16 2 O -0.33 -6.49 10.50 -92.43 -0.97 -7.46 16 3 C 0.11 2.40 6.69 22.51 0.15 2.55 16 4 C -0.21 -4.22 9.04 22.37 0.20 -4.02 16 5 C -0.09 -2.07 10.04 22.25 0.22 -1.85 16 6 C -0.14 -3.51 9.15 22.28 0.20 -3.31 16 7 C -0.04 -0.85 4.53 -19.88 -0.09 -0.94 16 8 C 0.10 2.13 2.45 44.32 0.11 2.24 16 9 H 0.08 1.40 7.88 -2.39 -0.02 1.38 16 10 C -0.11 -1.86 6.52 31.49 0.21 -1.66 16 11 C -0.12 -2.23 7.00 31.49 0.22 -2.01 16 12 C 0.03 0.85 5.92 86.46 0.51 1.36 16 13 N -0.50 -14.03 3.96 -865.60 -3.43 -17.45 16 14 C 0.04 1.18 5.26 85.56 0.45 1.63 16 15 C 0.50 20.67 7.68 87.66 0.67 21.34 16 16 O -0.58 -29.70 15.22 -3.04 -0.05 -29.74 16 17 N -0.71 -31.11 5.55 -466.78 -2.59 -33.70 16 18 C 0.27 15.26 5.43 85.63 0.46 15.73 16 19 C -0.56 -30.89 9.28 25.60 0.24 -30.65 16 20 H 0.08 4.15 7.60 -2.91 -0.02 4.12 16 21 C 0.00 0.20 5.46 84.66 0.46 0.66 16 22 N -0.93 -57.04 13.29 21.45 0.28 -56.75 16 23 Si 0.98 42.78 29.54 68.60 2.03 44.81 16 24 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 25 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 26 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 27 C -0.15 -3.28 9.62 22.37 0.22 -3.06 16 28 H 0.12 0.81 8.14 -2.38 -0.02 0.79 16 29 H 0.06 0.59 7.66 -2.39 -0.02 0.57 16 30 H 0.06 0.62 7.66 -2.39 -0.02 0.61 16 31 H 0.15 2.16 6.30 -2.91 -0.02 2.15 16 32 H 0.13 2.57 8.06 -2.91 -0.02 2.55 16 33 H 0.11 3.36 7.75 -2.91 -0.02 3.33 16 34 H 0.07 1.32 7.71 -2.39 -0.02 1.30 16 35 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.05 1.24 7.75 -2.39 -0.02 1.22 16 39 H 0.06 2.00 7.24 -2.39 -0.02 1.98 16 40 H 0.11 2.94 7.78 -2.39 -0.02 2.92 16 41 H 0.09 2.10 7.77 -2.38 -0.02 2.08 16 42 H 0.41 14.69 8.32 -92.70 -0.77 13.92 16 43 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 44 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 45 H 0.27 15.38 8.31 -92.71 -0.77 14.60 16 46 H 0.14 2.50 8.04 -2.91 -0.02 2.47 16 Total: -1.00 -75.50 377.91 0.84 -74.66 By element: Atomic # 1 Polarization: 26.10 SS G_CDS: 0.21 Total: 26.31 kcal Atomic # 6 Polarization: -6.02 SS G_CDS: 5.35 Total: -0.67 kcal Atomic # 7 Polarization: -102.17 SS G_CDS: -5.73 Total: -107.90 kcal Atomic # 8 Polarization: -36.19 SS G_CDS: -1.02 Total: -37.20 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Total: -75.50 0.84 -74.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044894484.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.166 kcal (2) G-P(sol) polarization free energy of solvation -75.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds