Wall clock time and date at job start Tue Mar 31 2020 05:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35907 * 116.99894 * 2 1 4 4 C 1.38733 * 120.05269 * 179.97438 * 3 2 1 5 5 C 1.38148 * 119.94206 * 180.02562 * 4 3 2 6 6 C 1.38264 * 120.05440 * 0.02562 * 5 4 3 7 7 C 1.50696 * 119.94449 * 179.97438 * 6 5 4 8 8 C 1.52996 * 109.47218 * 90.00222 * 7 6 5 9 9 C 1.50696 * 109.47218 * 179.97438 * 8 7 6 10 10 O 1.21282 * 120.00323 * 359.97438 * 9 8 7 11 11 N 1.34783 * 120.00050 * 179.97438 * 9 8 7 12 12 C 1.46967 * 120.59522 * 180.02562 * 11 9 8 13 13 C 1.53374 * 108.63231 * 235.25231 * 12 11 9 14 14 N 1.46972 * 108.63217 * 310.57203 * 13 12 11 15 15 C 1.36935 * 120.59045 * 235.20705 * 14 13 12 16 16 H 1.08002 * 119.99725 * 151.84492 * 15 14 13 17 17 C 1.38804 * 120.00405 * 331.57419 * 15 14 13 18 18 N 1.31622 * 119.99787 * 342.82520 * 17 15 14 19 19 Si 1.86800 * 120.00346 * 162.82771 * 17 15 14 20 20 H 1.48493 * 109.47374 * 89.99790 * 19 17 15 21 21 H 1.48496 * 109.47349 * 210.00137 * 19 17 15 22 22 H 1.48504 * 109.47003 * 329.99893 * 19 17 15 23 23 C 1.46962 * 118.81330 * 55.48066 * 14 13 12 24 24 C 1.46958 * 120.59366 * 0.02562 * 11 9 8 25 25 C 1.38271 * 120.11225 * 0.25717 * 6 5 4 26 26 C 1.38144 * 120.05528 * 359.44859 * 25 6 5 27 27 H 1.09004 * 109.46542 * 60.00450 * 1 2 3 28 28 H 1.08999 * 109.47066 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47471 * 300.00558 * 1 2 3 30 30 H 1.07998 * 120.03107 * 359.97438 * 4 3 2 31 31 H 1.07997 * 119.97527 * 180.02562 * 5 4 3 32 32 H 1.09003 * 109.47060 * 329.99909 * 7 6 5 33 33 H 1.09003 * 109.47416 * 210.00665 * 7 6 5 34 34 H 1.09000 * 109.46880 * 60.00029 * 8 7 6 35 35 H 1.09000 * 109.47474 * 300.00033 * 8 7 6 36 36 H 1.08996 * 109.60899 * 115.50126 * 12 11 9 37 37 H 1.09001 * 109.60456 * 354.99104 * 12 11 9 38 38 H 1.09002 * 109.60640 * 190.83592 * 13 12 11 39 39 H 1.08999 * 109.75615 * 70.39807 * 13 12 11 40 40 H 0.96999 * 119.99847 * 179.97438 * 18 17 15 41 41 H 1.08998 * 109.60973 * 64.26416 * 23 14 13 42 42 H 1.08995 * 109.61395 * 184.77560 * 23 14 13 43 43 H 1.09002 * 109.60988 * 244.49705 * 24 11 9 44 44 H 1.09006 * 109.61277 * 4.83592 * 24 11 9 45 45 H 1.08003 * 119.97152 * 179.70323 * 25 6 5 46 46 H 1.07997 * 120.03412 * 180.25190 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4313 1.2849 0.0005 5 6 4.0561 2.5170 0.0011 6 6 3.3019 3.6758 0.0016 7 6 3.9860 5.0185 0.0028 8 6 4.2180 5.4740 -1.4393 9 6 4.9015 6.8170 -1.4381 10 8 5.1757 7.3571 -0.3873 11 7 5.2082 7.4181 -2.6048 12 6 5.8753 8.7276 -2.6190 13 6 5.0303 9.6991 -3.4524 14 7 4.7031 9.0570 -4.7333 15 6 5.0139 9.6681 -5.9186 16 1 5.2059 9.0728 -6.7991 17 6 5.0766 11.0529 -5.9900 18 7 4.5227 11.7862 -5.0478 19 14 5.9472 11.8759 -7.4233 20 1 4.9770 12.1113 -8.5226 21 1 6.5154 13.1736 -6.9783 22 1 7.0414 10.9969 -7.9086 23 6 4.0311 7.7501 -4.7192 24 6 4.8815 6.7759 -3.8856 25 6 1.9210 3.6048 0.0070 26 6 1.2914 2.3752 0.0003 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 4.0208 0.3800 0.0014 31 1 5.1345 2.5751 0.0011 32 1 4.9437 4.9379 0.5169 33 1 3.3578 5.7460 0.5170 34 1 3.2602 5.5546 -1.9533 35 1 4.8462 4.7466 -1.9535 36 1 6.8653 8.6290 -3.0642 37 1 5.9656 9.1031 -1.5996 38 1 5.5966 10.6123 -3.6352 39 1 4.1110 9.9393 -2.9183 40 1 4.5668 12.7539 -5.0975 41 1 3.0424 7.8520 -4.2718 42 1 3.9372 7.3759 -5.7386 43 1 5.8009 6.5386 -4.4209 44 1 4.3181 5.8608 -3.7029 45 1 1.3341 4.5114 0.0122 46 1 0.2129 2.3201 0.0004 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058174910.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:45 Heat of formation + Delta-G solvation = -24.962551 kcal Electronic energy + Delta-G solvation = -26091.484268 eV Core-core repulsion = 22368.056180 eV Total energy + Delta-G solvation = -3723.428088 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 2.96 seconds Orbital eigenvalues (eV) -40.40947 -39.62004 -37.96604 -36.78838 -33.90013 -33.58089 -31.30592 -31.18422 -30.56968 -29.24464 -27.65845 -26.82276 -24.55449 -23.49331 -22.86946 -22.58738 -21.15640 -20.26756 -18.48653 -18.40776 -17.21868 -16.55389 -16.23163 -16.02619 -15.41191 -15.30618 -15.25075 -14.79120 -14.44286 -14.11540 -13.77269 -13.68164 -13.55706 -13.39850 -13.27017 -13.06020 -12.86841 -12.31630 -12.19780 -12.12669 -11.70074 -11.48109 -11.25469 -11.21297 -11.08722 -10.85468 -10.80937 -10.72120 -10.58100 -10.25805 -9.97248 -9.85811 -9.33548 -9.20914 -8.60143 -8.27734 -8.22186 -6.72120 -5.85995 -3.31384 1.13348 1.20331 2.99000 3.01981 3.33278 3.40269 3.41340 3.43760 3.61227 4.42961 4.53514 4.61673 4.65566 4.77598 4.80419 5.04023 5.07067 5.09779 5.12943 5.20260 5.27450 5.31370 5.32363 5.44472 5.60635 5.73279 5.76002 5.77695 5.89236 5.92727 6.05406 6.14269 6.15027 6.17174 6.34556 6.38908 6.50075 6.51835 6.55655 6.69028 6.87825 7.12830 7.25935 7.54152 7.71188 7.94221 8.35209 8.59736 9.10875 9.73720 10.30544 11.21393 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.025894 B = 0.002289 C = 0.002197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.084467 B =12231.256720 C =12739.506279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.321 6.321 3 C 0.118 3.882 4 C -0.150 4.150 5 C -0.077 4.077 6 C -0.114 4.114 7 C -0.060 4.060 8 C -0.132 4.132 9 C 0.507 3.493 10 O -0.558 6.558 11 N -0.598 5.598 12 C 0.087 3.913 13 C 0.158 3.842 14 N -0.591 5.591 15 C -0.257 4.257 16 H 0.067 0.933 17 C 0.003 3.997 18 N -0.901 5.901 19 Si 0.904 3.096 20 H -0.286 1.286 21 H -0.289 1.289 22 H -0.279 1.279 23 C 0.131 3.869 24 C 0.088 3.912 25 C -0.075 4.075 26 C -0.205 4.205 27 H 0.055 0.945 28 H 0.098 0.902 29 H 0.055 0.945 30 H 0.129 0.871 31 H 0.130 0.870 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.059 0.941 37 H 0.080 0.920 38 H 0.099 0.901 39 H 0.023 0.977 40 H 0.256 0.744 41 H 0.023 0.977 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.073 0.927 45 H 0.126 0.874 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.388 -21.082 9.368 23.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.234 6.234 3 C 0.073 3.927 4 C -0.169 4.169 5 C -0.095 4.095 6 C -0.114 4.114 7 C -0.098 4.098 8 C -0.172 4.172 9 C 0.295 3.705 10 O -0.438 6.438 11 N -0.330 5.330 12 C -0.037 4.037 13 C 0.032 3.968 14 N -0.314 5.314 15 C -0.387 4.387 16 H 0.085 0.915 17 C -0.196 4.196 18 N -0.545 5.545 19 Si 0.734 3.266 20 H -0.213 1.213 21 H -0.215 1.215 22 H -0.204 1.204 23 C 0.003 3.997 24 C -0.037 4.037 25 C -0.093 4.093 26 C -0.224 4.224 27 H 0.074 0.926 28 H 0.117 0.883 29 H 0.073 0.927 30 H 0.147 0.853 31 H 0.148 0.852 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.110 0.890 35 H 0.108 0.892 36 H 0.077 0.923 37 H 0.098 0.902 38 H 0.117 0.883 39 H 0.041 0.959 40 H 0.066 0.934 41 H 0.041 0.959 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.091 0.909 45 H 0.144 0.856 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -5.168 -20.780 9.896 23.589 hybrid contribution 0.015 0.623 -0.902 1.097 sum -5.153 -20.157 8.994 22.666 Atomic orbital electron populations 1.23043 0.78451 1.03844 1.01419 1.86056 1.21350 1.27117 1.88898 1.19043 0.92414 0.84082 0.97174 1.20414 0.91323 0.98640 1.06475 1.20910 0.99962 0.90928 0.97667 1.19889 0.93557 0.95351 1.02600 1.20276 1.01299 0.92527 0.95693 1.21653 1.01969 0.94965 0.98618 1.20598 0.79213 0.87133 0.83536 1.90645 1.55490 1.66612 1.31024 1.48097 1.58454 1.20852 1.05580 1.22489 0.96394 0.83209 1.01588 1.21186 0.96482 0.94564 0.84564 1.44018 1.66781 1.18054 1.02577 1.19169 1.41560 0.89100 0.88855 0.91510 1.25096 0.99620 0.96847 0.98013 1.70024 1.44578 1.04802 1.35051 0.86279 0.79620 0.78854 0.81890 1.21338 1.21485 1.20411 1.21369 0.93280 0.87410 0.97617 1.22473 1.00334 0.96076 0.84773 1.20909 0.94083 0.97114 0.97233 1.21224 0.99966 0.92351 1.08860 0.92594 0.88330 0.92684 0.85322 0.85237 0.90308 0.90279 0.89010 0.89164 0.92275 0.90166 0.88308 0.95912 0.93440 0.95903 0.91517 0.91617 0.90850 0.85592 0.85568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.32 -3.09 10.50 -19.45 -0.20 -3.29 16 3 C 0.12 1.20 6.69 -39.22 -0.26 0.94 16 4 C -0.15 -1.48 9.99 -39.43 -0.39 -1.87 16 5 C -0.08 -0.75 9.69 -39.60 -0.38 -1.13 16 6 C -0.11 -1.19 5.13 -104.60 -0.54 -1.73 16 7 C -0.06 -0.70 4.63 -27.89 -0.13 -0.83 16 8 C -0.13 -1.63 4.02 -27.89 -0.11 -1.74 16 9 C 0.51 8.60 7.70 -10.98 -0.08 8.52 16 10 O -0.56 -11.21 15.39 5.56 0.09 -11.12 16 11 N -0.60 -10.74 2.95 -172.19 -0.51 -11.25 16 12 C 0.09 1.75 6.59 -3.59 -0.02 1.73 16 13 C 0.16 3.78 5.51 -3.59 -0.02 3.76 16 14 N -0.59 -14.37 2.96 -171.74 -0.51 -14.88 16 15 C -0.26 -6.82 9.57 -15.06 -0.14 -6.96 16 16 H 0.07 1.72 7.89 -52.49 -0.41 1.31 16 17 C 0.00 0.09 4.91 -17.43 -0.09 0.00 16 18 N -0.90 -25.72 11.20 55.49 0.62 -25.09 16 19 Si 0.90 21.16 29.59 -169.99 -5.03 16.13 16 20 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 23 C 0.13 2.56 6.70 -3.35 -0.02 2.54 16 24 C 0.09 1.41 6.52 -3.35 -0.02 1.39 16 25 C -0.08 -0.75 9.69 -39.60 -0.38 -1.14 16 26 C -0.21 -1.94 9.04 -39.43 -0.36 -2.30 16 27 H 0.06 0.29 7.66 -51.93 -0.40 -0.11 16 28 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.05 0.28 7.66 -51.93 -0.40 -0.12 16 30 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 31 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 32 H 0.08 0.94 8.04 -51.93 -0.42 0.52 16 33 H 0.08 0.98 8.04 -51.93 -0.42 0.57 16 34 H 0.09 1.06 7.72 -51.93 -0.40 0.66 16 35 H 0.09 0.97 7.91 -51.93 -0.41 0.55 16 36 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 37 H 0.08 1.63 6.99 -51.93 -0.36 1.27 16 38 H 0.10 2.60 6.00 -51.93 -0.31 2.29 16 39 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 41 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.07 1.23 7.93 -51.93 -0.41 0.82 16 43 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.07 0.92 5.91 -51.93 -0.31 0.61 16 45 H 0.13 1.11 8.06 -52.48 -0.42 0.69 16 46 H 0.13 0.94 6.30 -52.49 -0.33 0.60 16 LS Contribution 371.36 15.07 5.60 5.60 Total: -1.00 -32.10 371.36 -9.01 -41.11 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -7.10 Total: 0.47 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: -1.97 Total: 2.32 kcal Atomic # 7 Polarization: -50.83 SS G_CDS: -0.39 Total: -51.22 kcal Atomic # 8 Polarization: -14.30 SS G_CDS: -0.12 Total: -14.41 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.03 Total: 16.13 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.10 -9.01 -41.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058174910.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.147 kcal (2) G-P(sol) polarization free energy of solvation -32.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.96 seconds