Wall clock time and date at job start Tue Mar 31 2020 05:22:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35907 * 116.99894 * 2 1 4 4 C 1.38733 * 120.05269 * 179.97438 * 3 2 1 5 5 C 1.38148 * 119.94206 * 180.02562 * 4 3 2 6 6 C 1.38264 * 120.05440 * 0.02562 * 5 4 3 7 7 C 1.50696 * 119.94449 * 179.97438 * 6 5 4 8 8 C 1.52996 * 109.47218 * 90.00222 * 7 6 5 9 9 C 1.50696 * 109.47218 * 179.97438 * 8 7 6 10 10 O 1.21282 * 120.00323 * 359.97438 * 9 8 7 11 11 N 1.34783 * 120.00050 * 179.97438 * 9 8 7 12 12 C 1.46967 * 120.59522 * 180.02562 * 11 9 8 13 13 C 1.53374 * 108.63231 * 235.25231 * 12 11 9 14 14 N 1.46972 * 108.63217 * 310.57203 * 13 12 11 15 15 C 1.36935 * 120.59045 * 235.20705 * 14 13 12 16 16 H 1.08002 * 119.99725 * 151.84492 * 15 14 13 17 17 C 1.38804 * 120.00405 * 331.57419 * 15 14 13 18 18 N 1.31622 * 119.99787 * 342.82520 * 17 15 14 19 19 Si 1.86800 * 120.00346 * 162.82771 * 17 15 14 20 20 H 1.48493 * 109.47374 * 89.99790 * 19 17 15 21 21 H 1.48496 * 109.47349 * 210.00137 * 19 17 15 22 22 H 1.48504 * 109.47003 * 329.99893 * 19 17 15 23 23 C 1.46962 * 118.81330 * 55.48066 * 14 13 12 24 24 C 1.46958 * 120.59366 * 0.02562 * 11 9 8 25 25 C 1.38271 * 120.11225 * 0.25717 * 6 5 4 26 26 C 1.38144 * 120.05528 * 359.44859 * 25 6 5 27 27 H 1.09004 * 109.46542 * 60.00450 * 1 2 3 28 28 H 1.08999 * 109.47066 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47471 * 300.00558 * 1 2 3 30 30 H 1.07998 * 120.03107 * 359.97438 * 4 3 2 31 31 H 1.07997 * 119.97527 * 180.02562 * 5 4 3 32 32 H 1.09003 * 109.47060 * 329.99909 * 7 6 5 33 33 H 1.09003 * 109.47416 * 210.00665 * 7 6 5 34 34 H 1.09000 * 109.46880 * 60.00029 * 8 7 6 35 35 H 1.09000 * 109.47474 * 300.00033 * 8 7 6 36 36 H 1.08996 * 109.60899 * 115.50126 * 12 11 9 37 37 H 1.09001 * 109.60456 * 354.99104 * 12 11 9 38 38 H 1.09002 * 109.60640 * 190.83592 * 13 12 11 39 39 H 1.08999 * 109.75615 * 70.39807 * 13 12 11 40 40 H 0.96999 * 119.99847 * 179.97438 * 18 17 15 41 41 H 1.08998 * 109.60973 * 64.26416 * 23 14 13 42 42 H 1.08995 * 109.61395 * 184.77560 * 23 14 13 43 43 H 1.09002 * 109.60988 * 244.49705 * 24 11 9 44 44 H 1.09006 * 109.61277 * 4.83592 * 24 11 9 45 45 H 1.08003 * 119.97152 * 179.70323 * 25 6 5 46 46 H 1.07997 * 120.03412 * 180.25190 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4313 1.2849 0.0005 5 6 4.0561 2.5170 0.0011 6 6 3.3019 3.6758 0.0016 7 6 3.9860 5.0185 0.0028 8 6 4.2180 5.4740 -1.4393 9 6 4.9015 6.8170 -1.4381 10 8 5.1757 7.3571 -0.3873 11 7 5.2082 7.4181 -2.6048 12 6 5.8753 8.7276 -2.6190 13 6 5.0303 9.6991 -3.4524 14 7 4.7031 9.0570 -4.7333 15 6 5.0139 9.6681 -5.9186 16 1 5.2059 9.0728 -6.7991 17 6 5.0766 11.0529 -5.9900 18 7 4.5227 11.7862 -5.0478 19 14 5.9472 11.8759 -7.4233 20 1 4.9770 12.1113 -8.5226 21 1 6.5154 13.1736 -6.9783 22 1 7.0414 10.9969 -7.9086 23 6 4.0311 7.7501 -4.7192 24 6 4.8815 6.7759 -3.8856 25 6 1.9210 3.6048 0.0070 26 6 1.2914 2.3752 0.0003 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 4.0208 0.3800 0.0014 31 1 5.1345 2.5751 0.0011 32 1 4.9437 4.9379 0.5169 33 1 3.3578 5.7460 0.5170 34 1 3.2602 5.5546 -1.9533 35 1 4.8462 4.7466 -1.9535 36 1 6.8653 8.6290 -3.0642 37 1 5.9656 9.1031 -1.5996 38 1 5.5966 10.6123 -3.6352 39 1 4.1110 9.9393 -2.9183 40 1 4.5668 12.7539 -5.0975 41 1 3.0424 7.8520 -4.2718 42 1 3.9372 7.3759 -5.7386 43 1 5.8009 6.5386 -4.4209 44 1 4.3181 5.8608 -3.7029 45 1 1.3341 4.5114 0.0122 46 1 0.2129 2.3201 0.0004 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058174910.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:43 Heat of formation + Delta-G solvation = -43.288298 kcal Electronic energy + Delta-G solvation = -26092.278932 eV Core-core repulsion = 22368.056180 eV Total energy + Delta-G solvation = -3724.222753 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.23243 -40.86953 -38.79003 -38.31529 -35.62183 -34.54150 -33.05033 -32.12399 -31.96283 -30.20721 -28.71685 -28.04532 -25.85415 -25.05034 -24.12600 -23.53112 -22.25338 -21.59549 -19.99261 -19.06315 -18.75428 -17.82735 -17.28374 -16.81673 -16.74041 -16.59464 -16.50248 -16.05693 -15.49290 -15.37687 -15.13912 -15.04505 -14.86990 -14.58478 -14.47198 -14.18470 -13.79319 -13.50393 -13.40066 -13.20849 -12.87792 -12.78783 -12.60223 -12.47865 -12.32921 -12.28672 -12.02758 -11.99667 -11.88336 -11.74975 -11.66653 -11.60176 -10.74914 -10.60543 -9.91594 -9.79307 -9.01175 -8.65750 -7.88711 -5.37512 0.42918 0.45892 1.47380 1.49885 1.59060 1.68919 2.10234 2.42423 2.51176 2.81841 3.26326 3.54598 3.60933 3.87083 3.99097 4.08908 4.16850 4.17856 4.25903 4.35540 4.35777 4.41201 4.44353 4.49877 4.53946 4.56845 4.64245 4.70732 4.73575 4.79075 4.82265 4.93033 4.97064 5.06750 5.16241 5.22575 5.25897 5.36255 5.43930 5.47048 5.60981 5.69238 5.75608 5.86327 6.35203 6.48331 6.56959 7.09150 7.23165 7.79151 8.32391 9.16484 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.025894 B = 0.002289 C = 0.002197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.084467 B =12231.256720 C =12739.506279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.337 6.337 3 C 0.108 3.892 4 C -0.161 4.161 5 C -0.077 4.077 6 C -0.122 4.122 7 C -0.052 4.052 8 C -0.121 4.121 9 C 0.504 3.496 10 O -0.594 6.594 11 N -0.605 5.605 12 C 0.102 3.898 13 C 0.170 3.830 14 N -0.610 5.610 15 C -0.261 4.261 16 H 0.076 0.924 17 C -0.053 4.053 18 N -0.937 5.937 19 Si 0.969 3.031 20 H -0.285 1.285 21 H -0.296 1.296 22 H -0.267 1.267 23 C 0.124 3.876 24 C 0.099 3.901 25 C -0.083 4.083 26 C -0.209 4.209 27 H 0.062 0.938 28 H 0.118 0.882 29 H 0.062 0.938 30 H 0.139 0.861 31 H 0.144 0.856 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.107 0.893 35 H 0.117 0.883 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.068 0.932 39 H -0.009 1.009 40 H 0.250 0.750 41 H 0.016 0.984 42 H 0.080 0.920 43 H 0.074 0.926 44 H 0.119 0.881 45 H 0.134 0.866 46 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.539 -23.830 8.634 25.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.251 6.251 3 C 0.063 3.937 4 C -0.179 4.179 5 C -0.095 4.095 6 C -0.122 4.122 7 C -0.090 4.090 8 C -0.161 4.161 9 C 0.295 3.705 10 O -0.475 6.475 11 N -0.337 5.337 12 C -0.023 4.023 13 C 0.043 3.957 14 N -0.333 5.333 15 C -0.391 4.391 16 H 0.093 0.907 17 C -0.248 4.248 18 N -0.583 5.583 19 Si 0.797 3.203 20 H -0.211 1.211 21 H -0.223 1.223 22 H -0.192 1.192 23 C -0.002 4.002 24 C -0.025 4.025 25 C -0.101 4.101 26 C -0.227 4.227 27 H 0.081 0.919 28 H 0.136 0.864 29 H 0.081 0.919 30 H 0.157 0.843 31 H 0.162 0.838 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.125 0.875 35 H 0.135 0.865 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.009 0.991 40 H 0.059 0.941 41 H 0.034 0.966 42 H 0.098 0.902 43 H 0.093 0.907 44 H 0.137 0.863 45 H 0.152 0.848 46 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -5.332 -23.588 9.150 25.856 hybrid contribution -0.033 1.392 -0.631 1.529 sum -5.365 -22.195 8.520 24.372 Atomic orbital electron populations 1.23309 0.76677 1.05448 1.02121 1.86037 1.23281 1.27005 1.88802 1.19269 0.92829 0.84572 0.97036 1.20634 0.91608 0.99156 1.06525 1.21075 1.00748 0.90592 0.97093 1.19791 0.93792 0.94798 1.03846 1.20144 1.00874 0.92919 0.95064 1.21684 1.02458 0.92266 0.99658 1.21450 0.78302 0.88354 0.82424 1.90632 1.56743 1.67875 1.32273 1.48199 1.58524 1.20000 1.06942 1.22062 0.95952 0.84029 1.00252 1.20871 0.95083 0.94669 0.85046 1.44280 1.67644 1.19515 1.01905 1.19555 1.40382 0.89451 0.89741 0.90664 1.25876 1.00745 0.97629 1.00575 1.70186 1.46445 1.04539 1.37171 0.85252 0.78633 0.77487 0.78901 1.21125 1.22266 1.19196 1.21599 0.93314 0.85985 0.99297 1.22480 1.00619 0.96199 0.83163 1.21075 0.94128 0.97718 0.97148 1.21421 1.00966 0.91921 1.08431 0.91897 0.86424 0.91914 0.84341 0.83797 0.90898 0.91659 0.87450 0.86451 0.91795 0.90857 0.91410 0.99083 0.94081 0.96585 0.90192 0.90725 0.86330 0.84850 0.83834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 113.37 1.11 1.29 16 2 O -0.34 -5.89 10.50 -92.50 -0.97 -6.86 16 3 C 0.11 2.00 6.69 22.51 0.15 2.15 16 4 C -0.16 -2.86 9.99 22.37 0.22 -2.63 16 5 C -0.08 -1.33 9.69 22.25 0.22 -1.11 16 6 C -0.12 -2.29 5.13 -19.85 -0.10 -2.40 16 7 C -0.05 -1.12 4.63 29.85 0.14 -0.98 16 8 C -0.12 -2.61 4.02 29.85 0.12 -2.49 16 9 C 0.50 16.27 7.70 87.65 0.67 16.94 16 10 O -0.59 -23.64 15.39 -3.04 -0.05 -23.68 16 11 N -0.60 -20.78 2.95 -817.07 -2.41 -23.19 16 12 C 0.10 4.14 6.59 86.42 0.57 4.70 16 13 C 0.17 8.37 5.51 86.41 0.48 8.85 16 14 N -0.61 -29.64 2.96 -697.26 -2.06 -31.71 16 15 C -0.26 -13.80 9.57 84.03 0.80 -13.00 16 16 H 0.08 3.78 7.89 -2.91 -0.02 3.75 16 17 C -0.05 -2.90 4.91 84.86 0.42 -2.49 16 18 N -0.94 -55.25 11.20 21.65 0.24 -55.01 16 19 Si 0.97 43.90 29.59 68.60 2.03 45.93 16 20 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 21 H -0.30 -13.63 7.11 99.48 0.71 -12.93 16 22 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 23 C 0.12 4.65 6.70 86.58 0.58 5.23 16 24 C 0.10 2.85 6.52 86.58 0.56 3.42 16 25 C -0.08 -1.48 9.69 22.26 0.22 -1.27 16 26 C -0.21 -3.52 9.04 22.37 0.20 -3.32 16 27 H 0.06 0.51 7.66 -2.38 -0.02 0.49 16 28 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.06 0.50 7.66 -2.39 -0.02 0.48 16 30 H 0.14 2.08 8.06 -2.91 -0.02 2.06 16 31 H 0.14 1.96 8.06 -2.91 -0.02 1.94 16 32 H 0.07 1.64 8.04 -2.39 -0.02 1.62 16 33 H 0.06 1.57 8.04 -2.39 -0.02 1.55 16 34 H 0.11 2.06 7.72 -2.39 -0.02 2.04 16 35 H 0.12 1.97 7.91 -2.39 -0.02 1.95 16 36 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 37 H 0.07 3.06 6.99 -2.39 -0.02 3.05 16 38 H 0.07 3.74 6.00 -2.39 -0.01 3.73 16 39 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 40 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 41 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 42 H 0.08 2.76 7.93 -2.39 -0.02 2.74 16 43 H 0.07 2.08 8.14 -2.39 -0.02 2.07 16 44 H 0.12 2.38 5.91 -2.38 -0.01 2.37 16 45 H 0.13 2.11 8.06 -2.91 -0.02 2.09 16 46 H 0.14 1.79 6.30 -2.91 -0.02 1.77 16 Total: -1.00 -70.92 371.36 4.11 -66.81 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: 0.96 Total: 14.80 kcal Atomic # 6 Polarization: 6.55 SS G_CDS: 6.36 Total: 12.91 kcal Atomic # 7 Polarization: -105.68 SS G_CDS: -4.23 Total: -109.91 kcal Atomic # 8 Polarization: -29.52 SS G_CDS: -1.02 Total: -30.54 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -70.92 4.11 -66.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058174910.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.524 kcal (2) G-P(sol) polarization free energy of solvation -70.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds