Wall clock time and date at job start Tue Mar 31 2020 04:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42894 * 109.47402 * 2 1 4 4 C 1.52997 * 109.47229 * 239.99691 * 2 1 3 5 5 C 1.50698 * 109.47190 * 60.00100 * 4 2 1 6 6 C 1.38235 * 119.99988 * 90.00056 * 5 4 2 7 7 C 1.38240 * 119.99886 * 179.97438 * 6 5 4 8 8 C 1.38234 * 119.99979 * 0.06775 * 7 6 5 9 9 C 1.38236 * 119.99918 * 359.90845 * 8 7 6 10 10 C 1.38230 * 120.00008 * 269.97790 * 5 4 2 11 11 C 1.50705 * 109.46713 * 119.99773 * 2 1 3 12 12 O 1.21276 * 119.99829 * 101.60618 * 11 2 1 13 13 N 1.34774 * 120.00198 * 281.59527 * 11 2 1 14 14 C 1.46971 * 120.59188 * 5.05305 * 13 11 2 15 15 C 1.53809 * 108.39808 * 124.75325 * 14 13 11 16 16 N 1.46965 * 108.57663 * 49.63906 * 15 14 13 17 17 C 1.36937 * 120.59327 * 124.62605 * 16 15 14 18 18 H 1.07996 * 120.00402 * 208.16298 * 17 16 15 19 19 C 1.38815 * 119.99964 * 28.16562 * 17 16 15 20 20 N 1.31623 * 120.00306 * 16.24408 * 19 17 16 21 21 Si 1.86800 * 119.99882 * 196.24685 * 19 17 16 22 22 H 1.48503 * 109.47120 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47040 * 119.99781 * 21 19 17 24 24 H 1.48494 * 109.47237 * 239.99688 * 21 19 17 25 25 C 1.46962 * 118.81086 * 304.64078 * 16 15 14 26 26 C 1.46956 * 120.59823 * 185.32735 * 13 11 2 27 27 H 1.09002 * 109.47439 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47560 * 300.00362 * 1 2 3 29 29 H 1.09003 * 109.47507 * 60.00529 * 1 2 3 30 30 H 0.96696 * 114.00776 * 179.97438 * 3 2 1 31 31 H 1.09003 * 109.47413 * 299.99727 * 4 2 1 32 32 H 1.09003 * 109.47307 * 180.02562 * 4 2 1 33 33 H 1.08004 * 120.00009 * 359.69644 * 6 5 4 34 34 H 1.07997 * 119.99418 * 179.97438 * 7 6 5 35 35 H 1.07998 * 119.99630 * 179.97438 * 8 7 6 36 36 H 1.07997 * 119.99943 * 180.02562 * 9 8 7 37 37 H 1.08004 * 119.99769 * 359.97438 * 10 5 4 38 38 H 1.09004 * 109.60832 * 244.54016 * 14 13 11 39 39 H 1.09000 * 109.60856 * 5.04301 * 14 13 11 40 40 H 1.09000 * 109.74055 * 289.84894 * 15 14 13 41 41 H 1.09000 * 109.52876 * 169.30283 * 15 14 13 42 42 H 0.97001 * 120.00079 * 180.02562 * 20 19 17 43 43 H 1.08995 * 109.61161 * 295.48353 * 25 16 15 44 44 H 1.09010 * 109.75043 * 175.05870 * 25 16 15 45 45 H 1.09009 * 109.61267 * 354.95443 * 26 13 11 46 46 H 1.09004 * 109.61550 * 115.28945 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0110 -2.4797 6 6 2.2848 1.0060 -3.0441 7 6 1.8243 1.6572 -4.1731 8 6 0.6160 1.2924 -4.7370 9 6 -0.1309 0.2751 -4.1728 10 6 0.3301 -0.3766 -3.0443 11 6 2.0322 -0.7104 1.2306 12 8 2.4335 -1.8520 1.1503 13 7 2.0356 -0.0770 2.4202 14 6 1.4514 1.2649 2.5547 15 6 0.3937 1.2243 3.6707 16 7 0.9871 0.5880 4.8552 17 6 0.9912 1.2320 6.0637 18 1 1.7684 1.0235 6.7840 19 6 -0.0035 2.1528 6.3629 20 7 -1.1100 2.1812 5.6506 21 14 0.2282 3.3518 7.7765 22 1 1.5481 3.1155 8.4146 23 1 0.1693 4.7430 7.2603 24 1 -0.8489 3.1497 8.7786 25 6 1.5761 -0.7515 4.7194 26 6 2.6288 -0.7131 3.6047 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 2.9703 1.4236 0.0004 31 1 1.6767 -1.7490 -1.2491 32 1 3.1300 -0.7217 -1.2490 33 1 3.2261 1.2948 -2.6003 34 1 2.4078 2.4520 -4.6138 35 1 0.2561 1.8015 -5.6188 36 1 -1.0746 -0.0102 -4.6136 37 1 -0.2532 -1.1717 -2.6037 38 1 2.2327 1.9797 2.8133 39 1 0.9827 1.5558 1.6146 40 1 -0.4694 0.6470 3.3390 41 1 0.0848 2.2401 3.9171 42 1 -1.8049 2.8249 5.8595 43 1 0.7972 -1.4693 4.4625 44 1 2.0475 -1.0435 5.6579 45 1 2.9378 -1.7290 3.3582 46 1 3.4938 -0.1377 3.9345 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000073851913.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:44 Heat of formation + Delta-G solvation = -44.249372 kcal Electronic energy + Delta-G solvation = -27732.350209 eV Core-core repulsion = 24008.085782 eV Total energy + Delta-G solvation = -3724.264428 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.79251 -40.10605 -38.59908 -37.93670 -35.61563 -34.07453 -33.22296 -32.03215 -31.72205 -31.10414 -28.78974 -27.87642 -25.88199 -24.64242 -23.94918 -23.31763 -22.32344 -21.45565 -20.36285 -19.31940 -18.10366 -17.40926 -17.38323 -16.91296 -16.69551 -16.41217 -15.95747 -15.84320 -15.43130 -15.42293 -15.32421 -14.96526 -14.87872 -14.21527 -13.94968 -13.78368 -13.63323 -13.49021 -13.32486 -13.13660 -13.01925 -12.94190 -12.71186 -12.62911 -12.45296 -12.22609 -12.04056 -12.00254 -11.84097 -11.76222 -11.68641 -11.47105 -10.63244 -10.36019 -9.83682 -9.70857 -9.50214 -8.66067 -7.88361 -5.37551 0.50525 0.59979 1.44172 1.48337 1.49937 1.60015 1.99065 2.50794 2.94351 3.10665 3.26504 3.30644 3.61902 3.80195 3.87393 4.01397 4.13742 4.23989 4.24895 4.27609 4.37510 4.42422 4.52079 4.57560 4.66462 4.70693 4.71727 4.76061 4.81090 4.84913 4.89358 4.94256 5.05259 5.12483 5.21696 5.26029 5.29618 5.53427 5.60066 5.65440 5.66079 5.71158 5.78884 6.20662 6.35274 6.40203 6.61587 7.08378 7.10685 7.78124 8.31469 9.16441 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.021032 B = 0.003269 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.971732 B = 8562.099681 C = 9230.997639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.144 3.856 3 O -0.538 6.538 4 C -0.082 4.082 5 C -0.081 4.081 6 C -0.113 4.113 7 C -0.129 4.129 8 C -0.132 4.132 9 C -0.129 4.129 10 C -0.128 4.128 11 C 0.484 3.516 12 O -0.579 6.579 13 N -0.588 5.588 14 C 0.093 3.907 15 C 0.162 3.838 16 N -0.609 5.609 17 C -0.265 4.265 18 H 0.069 0.931 19 C -0.047 4.047 20 N -0.933 5.933 21 Si 0.970 3.030 22 H -0.267 1.267 23 H -0.287 1.287 24 H -0.295 1.295 25 C 0.132 3.868 26 C 0.101 3.899 27 H 0.075 0.925 28 H 0.057 0.943 29 H 0.090 0.910 30 H 0.390 0.610 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.131 0.869 34 H 0.138 0.862 35 H 0.138 0.862 36 H 0.136 0.864 37 H 0.125 0.875 38 H 0.064 0.936 39 H 0.122 0.878 40 H -0.005 1.005 41 H 0.073 0.927 42 H 0.251 0.749 43 H 0.006 0.994 44 H 0.073 0.927 45 H 0.086 0.914 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.217 -1.166 -19.854 20.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.100 3.900 3 O -0.346 6.346 4 C -0.120 4.120 5 C -0.081 4.081 6 C -0.131 4.131 7 C -0.146 4.146 8 C -0.150 4.150 9 C -0.147 4.147 10 C -0.146 4.146 11 C 0.272 3.728 12 O -0.460 6.460 13 N -0.319 5.319 14 C -0.030 4.030 15 C 0.036 3.964 16 N -0.332 5.332 17 C -0.394 4.394 18 H 0.087 0.913 19 C -0.243 4.243 20 N -0.579 5.579 21 Si 0.798 3.202 22 H -0.191 1.191 23 H -0.214 1.214 24 H -0.222 1.222 25 C 0.006 3.994 26 C -0.023 4.023 27 H 0.094 0.906 28 H 0.076 0.924 29 H 0.108 0.892 30 H 0.240 0.760 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.149 0.851 34 H 0.156 0.844 35 H 0.156 0.844 36 H 0.154 0.846 37 H 0.143 0.857 38 H 0.082 0.918 39 H 0.140 0.860 40 H 0.013 0.987 41 H 0.091 0.909 42 H 0.061 0.939 43 H 0.024 0.976 44 H 0.091 0.909 45 H 0.105 0.895 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 5.673 -1.524 -19.828 20.680 hybrid contribution 0.191 0.299 1.229 1.279 sum 5.864 -1.225 -18.600 19.541 Atomic orbital electron populations 1.21956 0.90782 1.03282 1.04046 1.21079 0.96466 0.82656 0.89827 1.86599 1.28179 1.23543 1.96282 1.20928 1.01597 0.99199 0.90239 1.19647 0.95453 0.97155 0.95834 1.21202 1.00350 0.95429 0.96102 1.21417 0.96817 1.00170 0.96232 1.21450 0.95136 0.97637 1.00732 1.21387 1.00604 0.96627 0.96117 1.21260 0.95919 1.00721 0.96696 1.21932 0.78213 0.86681 0.85926 1.90633 1.50072 1.18942 1.86374 1.48147 1.56745 1.18650 1.08368 1.22841 0.96933 0.81859 1.01349 1.21152 0.91629 0.98424 0.85211 1.44277 1.68594 1.14195 1.06182 1.19562 1.06062 1.19345 0.94473 0.91285 1.25813 0.94342 1.03170 1.00968 1.70162 1.06494 1.37678 1.43565 0.85180 0.77561 0.78713 0.78780 1.19124 1.21377 1.22191 1.21340 0.94049 0.86803 0.97245 1.22057 0.96073 0.98696 0.85480 0.90616 0.92360 0.89154 0.76017 0.89900 0.89884 0.85134 0.84431 0.84399 0.84567 0.85709 0.91791 0.86036 0.98659 0.90855 0.93934 0.97567 0.90907 0.89528 0.90882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.72 7.96 71.98 0.57 -3.15 16 2 C 0.14 3.62 0.64 -11.54 -0.01 3.61 16 3 O -0.54 -12.10 9.33 -148.98 -1.39 -13.49 16 4 C -0.08 -1.79 4.07 29.85 0.12 -1.67 16 5 C -0.08 -1.63 4.34 -19.87 -0.09 -1.72 16 6 C -0.11 -2.05 9.27 22.27 0.21 -1.84 16 7 C -0.13 -2.11 10.05 22.27 0.22 -1.89 16 8 C -0.13 -2.11 10.05 22.27 0.22 -1.89 16 9 C -0.13 -2.21 10.05 22.27 0.22 -1.99 16 10 C -0.13 -2.48 7.88 22.27 0.18 -2.30 16 11 C 0.48 15.67 6.62 87.66 0.58 16.25 16 12 O -0.58 -21.58 15.43 -3.02 -0.05 -21.63 16 13 N -0.59 -20.44 2.94 -817.15 -2.40 -22.84 16 14 C 0.09 3.36 5.28 86.56 0.46 3.81 16 15 C 0.16 7.60 5.52 86.56 0.48 8.08 16 16 N -0.61 -30.18 2.97 -697.36 -2.07 -32.25 16 17 C -0.26 -14.20 9.59 84.03 0.81 -13.39 16 18 H 0.07 3.61 7.88 -2.91 -0.02 3.58 16 19 C -0.05 -2.57 4.94 84.86 0.42 -2.16 16 20 N -0.93 -53.79 11.11 21.65 0.24 -53.55 16 21 Si 0.97 43.75 29.58 68.60 2.03 45.78 16 22 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 23 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 24 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 25 C 0.13 5.59 6.67 86.41 0.58 6.17 16 26 C 0.10 3.63 6.60 86.42 0.57 4.20 16 27 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 28 H 0.06 1.75 6.36 -2.39 -0.02 1.73 16 29 H 0.09 2.12 6.18 -2.39 -0.01 2.11 16 30 H 0.39 6.41 9.04 -74.06 -0.67 5.74 16 31 H 0.08 1.98 7.85 -2.39 -0.02 1.96 16 32 H 0.08 1.71 8.09 -2.39 -0.02 1.70 16 33 H 0.13 1.95 8.06 -2.91 -0.02 1.93 16 34 H 0.14 1.66 8.06 -2.91 -0.02 1.64 16 35 H 0.14 1.57 8.06 -2.91 -0.02 1.55 16 36 H 0.14 1.77 8.06 -2.91 -0.02 1.74 16 37 H 0.12 2.22 8.03 -2.91 -0.02 2.19 16 38 H 0.06 2.27 8.14 -2.38 -0.02 2.25 16 39 H 0.12 3.94 3.62 -2.39 -0.01 3.93 16 40 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 41 H 0.07 3.85 5.94 -2.39 -0.01 3.84 16 42 H 0.25 14.01 8.31 -92.71 -0.77 13.24 16 43 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 44 H 0.07 2.92 7.94 -2.38 -0.02 2.90 16 45 H 0.09 3.01 6.99 -2.38 -0.02 3.00 16 46 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 Total: -1.00 -66.33 361.37 2.22 -64.11 By element: Atomic # 1 Polarization: 23.45 SS G_CDS: 0.32 Total: 23.76 kcal Atomic # 6 Polarization: 4.57 SS G_CDS: 5.54 Total: 10.11 kcal Atomic # 7 Polarization: -104.41 SS G_CDS: -4.23 Total: -108.64 kcal Atomic # 8 Polarization: -33.68 SS G_CDS: -1.44 Total: -35.12 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -66.33 2.22 -64.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073851913.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.859 kcal (2) G-P(sol) polarization free energy of solvation -66.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds