Wall clock time and date at job start Tue Mar 31 2020 05:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46503 * 120.00094 * 2 1 4 4 C 1.52995 * 109.47077 * 269.99690 * 3 2 1 5 5 O 1.42902 * 110.62833 * 303.10788 * 4 3 2 6 6 C 1.55147 * 110.70588 * 66.40065 * 4 3 2 7 7 C 1.54898 * 101.65365 * 154.03760 * 6 4 3 8 8 N 1.47846 * 104.79512 * 322.93080 * 7 6 4 9 9 C 1.46899 * 111.00134 * 146.36537 * 8 7 6 10 10 C 1.50711 * 109.46912 * 69.15424 * 9 8 7 11 11 C 1.38231 * 120.00221 * 269.72541 * 10 9 8 12 12 C 1.38232 * 119.99922 * 179.78955 * 11 10 9 13 13 C 1.38232 * 120.00267 * 0.46534 * 12 11 10 14 14 C 1.38238 * 119.99817 * 359.76585 * 13 12 11 15 15 C 1.38234 * 119.99919 * 0.02823 * 14 13 12 16 16 C 1.47433 * 108.56867 * 24.09568 * 8 7 6 17 17 C 1.34786 * 119.99980 * 179.97438 * 2 1 3 18 18 O 1.21686 * 119.99696 * 180.02562 * 17 2 1 19 19 C 1.46373 * 119.99966 * 0.02562 * 17 2 1 20 20 H 1.07999 * 119.99983 * 4.84420 * 19 17 2 21 21 C 1.40045 * 119.99962 * 184.84619 * 19 17 2 22 22 N 1.30665 * 120.00095 * 184.05682 * 21 19 17 23 23 Si 1.86807 * 119.99934 * 4.05352 * 21 19 17 24 24 H 1.48503 * 109.46909 * 180.02562 * 23 21 19 25 25 H 1.48496 * 109.47261 * 300.00376 * 23 21 19 26 26 H 1.48504 * 109.47011 * 60.00419 * 23 21 19 27 27 H 1.08997 * 109.47263 * 269.99934 * 1 2 3 28 28 H 1.08994 * 109.47020 * 30.00116 * 1 2 3 29 29 H 1.08998 * 109.46811 * 150.00422 * 1 2 3 30 30 H 1.08996 * 109.46799 * 29.99702 * 3 2 1 31 31 H 1.08998 * 109.47144 * 149.99862 * 3 2 1 32 32 H 0.96695 * 114.00395 * 59.29910 * 5 4 3 33 33 H 1.08999 * 110.98869 * 272.12946 * 6 4 3 34 34 H 1.09002 * 110.98659 * 35.94284 * 6 4 3 35 35 H 1.08998 * 110.37349 * 204.10420 * 7 6 4 36 36 H 1.09003 * 110.47118 * 81.80489 * 7 6 4 37 37 H 1.09002 * 109.47698 * 189.15269 * 9 8 7 38 38 H 1.08996 * 109.47397 * 309.15809 * 9 8 7 39 39 H 1.08003 * 119.99736 * 0.02562 * 11 10 9 40 40 H 1.08003 * 119.99802 * 180.25268 * 12 11 10 41 41 H 1.07997 * 120.00162 * 179.78901 * 13 12 11 42 42 H 1.07995 * 120.00073 * 179.97438 * 14 13 12 43 43 H 1.08003 * 119.99840 * 179.97438 * 15 14 13 44 44 H 1.09005 * 109.89137 * 239.60641 * 16 8 7 45 45 H 1.09009 * 109.89008 * 118.41965 * 16 8 7 46 46 H 0.97004 * 120.00406 * 354.69932 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7103 -1.4425 5 8 3.1623 0.6991 -2.1606 6 6 1.1184 2.0593 -2.1534 7 6 1.5924 3.0644 -3.2324 8 7 2.6576 3.8505 -2.5742 9 6 3.6990 4.2351 -3.5362 10 6 3.1414 5.2495 -4.5013 11 6 2.5439 4.8310 -5.6754 12 6 2.0287 5.7612 -6.5585 13 6 2.1194 7.1105 -6.2721 14 6 2.7212 7.5293 -5.1002 15 6 3.2327 6.5989 -4.2150 16 6 3.2239 3.0465 -1.4758 17 6 2.1389 -1.1673 0.0005 18 8 3.3558 -1.1672 0.0010 19 6 1.4070 -2.4349 0.0005 20 1 0.3300 -2.4366 -0.0789 21 6 2.1035 -3.6455 0.1035 22 7 1.4585 -4.7791 0.0239 23 14 3.9546 -3.6398 0.3547 24 1 4.4481 -5.0383 0.4308 25 1 4.6066 -2.9466 -0.7852 26 1 4.2805 -2.9299 1.6177 27 1 -0.3633 0.0000 1.0276 28 1 -0.3633 0.8899 -0.5138 29 1 -0.3633 -0.8900 -0.5138 30 1 1.6084 2.0283 0.5138 31 1 3.1499 1.1384 0.5138 32 1 2.7025 -0.1506 -2.2013 33 1 0.6770 1.1741 -2.6113 34 1 0.4190 2.5294 -1.4620 35 1 0.7708 3.7150 -3.5320 36 1 1.9913 2.5349 -4.0977 37 1 4.5449 4.6682 -3.0023 38 1 4.0291 3.3538 -4.0860 39 1 2.4763 3.7769 -5.9010 40 1 1.5582 5.4340 -7.4740 41 1 1.7198 7.8374 -6.9637 42 1 2.7925 8.5835 -4.8765 43 1 3.7032 6.9261 -3.2996 44 1 3.0977 3.5712 -0.5288 45 1 4.2819 2.8594 -1.6604 46 1 0.4899 -4.7834 -0.0293 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188082503.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:27 Heat of formation + Delta-G solvation = -60.786783 kcal Electronic energy + Delta-G solvation = -27220.575297 eV Core-core repulsion = 23495.593754 eV Total energy + Delta-G solvation = -3724.981544 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.09577 -39.17278 -37.87058 -35.57324 -34.12170 -32.96253 -32.56769 -31.07209 -30.05814 -29.56747 -27.04451 -26.10413 -25.47123 -23.67035 -22.75825 -21.76727 -20.79035 -20.24757 -19.27585 -17.43768 -17.07692 -16.45382 -15.95900 -15.77919 -15.52388 -15.30627 -15.18863 -14.72259 -14.23994 -13.87051 -13.62727 -13.56172 -13.34063 -13.07866 -12.77079 -12.67523 -12.50424 -12.32886 -12.09826 -12.03240 -11.99812 -11.68567 -11.50316 -11.34542 -11.17584 -11.05002 -10.84897 -10.53914 -10.35620 -10.24121 -9.61302 -9.15921 -9.07516 -9.00718 -8.95962 -8.38767 -7.94049 -7.64479 -7.03509 -4.99076 1.17330 1.24824 3.53718 3.55336 3.66319 3.96561 4.09739 4.19503 4.27158 4.40490 4.56228 4.59081 4.69271 4.78181 4.83469 4.95424 5.04348 5.08797 5.17227 5.32102 5.36199 5.43091 5.47423 5.51420 5.52609 5.66572 5.73812 5.82391 5.85214 5.88157 5.91496 6.00817 6.03304 6.13310 6.20673 6.28900 6.31940 6.33768 6.35458 6.47931 6.82136 6.88957 6.98155 7.14510 7.65314 7.70593 8.04519 8.12428 8.77963 8.86642 9.96484 10.28398 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.027492 B = 0.002847 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.222239 B = 9832.792543 C = 9962.039862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.639 5.639 3 C 0.107 3.893 4 C 0.100 3.900 5 O -0.546 6.546 6 C -0.151 4.151 7 C 0.049 3.951 8 N -0.520 5.520 9 C 0.086 3.914 10 C -0.071 4.071 11 C -0.113 4.113 12 C -0.122 4.122 13 C -0.125 4.125 14 C -0.123 4.123 15 C -0.100 4.100 16 C 0.056 3.944 17 C 0.545 3.455 18 O -0.603 6.603 19 C -0.597 4.597 20 H 0.075 0.925 21 C 0.061 3.939 22 N -0.831 5.831 23 Si 1.129 2.871 24 H -0.324 1.324 25 H -0.280 1.280 26 H -0.292 1.292 27 H 0.036 0.964 28 H 0.049 0.951 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.383 0.617 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.048 0.952 37 H 0.081 0.919 38 H 0.049 0.951 39 H 0.118 0.882 40 H 0.119 0.881 41 H 0.118 0.882 42 H 0.120 0.880 43 H 0.122 0.878 44 H 0.090 0.910 45 H 0.068 0.932 46 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.658 21.233 -8.913 23.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.374 5.374 3 C -0.019 4.019 4 C 0.056 3.944 5 O -0.353 6.353 6 C -0.189 4.189 7 C -0.078 4.078 8 N -0.243 5.243 9 C -0.042 4.042 10 C -0.072 4.072 11 C -0.131 4.131 12 C -0.140 4.140 13 C -0.143 4.143 14 C -0.141 4.141 15 C -0.119 4.119 16 C -0.072 4.072 17 C 0.355 3.645 18 O -0.496 6.496 19 C -0.633 4.633 20 H 0.093 0.907 21 C -0.157 4.157 22 N -0.459 5.459 23 Si 0.962 3.038 24 H -0.256 1.256 25 H -0.207 1.207 26 H -0.219 1.219 27 H 0.055 0.945 28 H 0.068 0.932 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.102 0.898 32 H 0.233 0.767 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.093 0.907 36 H 0.066 0.934 37 H 0.100 0.900 38 H 0.067 0.933 39 H 0.136 0.864 40 H 0.137 0.863 41 H 0.136 0.864 42 H 0.138 0.862 43 H 0.140 0.860 44 H 0.108 0.892 45 H 0.087 0.913 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.377 21.187 -8.667 22.894 hybrid contribution -1.982 -0.083 -0.391 2.022 sum -1.604 21.104 -9.058 23.022 Atomic orbital electron populations 1.21539 0.81352 1.01537 1.00280 1.47594 1.05518 1.05064 1.79241 1.21678 0.98494 0.86879 0.94810 1.22771 0.90493 0.88600 0.92528 1.86392 1.49374 1.23696 1.75878 1.23393 0.98053 0.99203 0.98256 1.23000 0.94485 0.94095 0.96213 1.63724 1.10551 1.40370 1.09694 1.21268 0.93778 0.96329 0.92787 1.19792 0.98386 0.94294 0.94683 1.21110 0.98233 0.99573 0.94193 1.21113 1.00107 0.93271 0.99499 1.21125 0.99935 0.95844 0.97408 1.21137 0.98905 0.99431 0.94652 1.21030 0.99439 0.92395 0.99027 1.22769 0.98714 0.90236 0.95437 1.18556 0.86648 0.83412 0.75869 1.90185 1.14624 1.84927 1.59845 1.22171 0.95822 0.90567 1.54728 0.90691 1.27170 1.09558 0.90589 0.88399 1.70661 1.11388 1.28134 1.35674 0.82365 0.71443 0.71006 0.78940 1.25635 1.20672 1.21927 0.94541 0.93244 0.90901 0.91477 0.89800 0.76679 0.90539 0.90225 0.90688 0.93370 0.90009 0.93285 0.86365 0.86259 0.86376 0.86241 0.86028 0.89157 0.91335 0.91217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.63 9.87 59.85 0.59 2.22 16 2 N -0.64 -12.82 2.58 -183.26 -0.47 -13.29 16 3 C 0.11 1.84 4.59 -4.04 -0.02 1.82 16 4 C 0.10 1.59 1.03 -88.80 -0.09 1.50 16 5 O -0.55 -10.68 12.46 -41.28 -0.51 -11.19 16 6 C -0.15 -2.06 4.72 -24.59 -0.12 -2.17 16 7 C 0.05 0.63 5.61 -2.30 -0.01 0.62 16 8 N -0.52 -6.60 5.15 -232.70 -1.20 -7.80 16 9 C 0.09 1.00 4.72 -4.97 -0.02 0.98 16 10 C -0.07 -0.78 5.09 -104.62 -0.53 -1.31 16 11 C -0.11 -1.18 8.93 -39.59 -0.35 -1.54 16 12 C -0.12 -1.14 10.05 -39.59 -0.40 -1.54 16 13 C -0.12 -1.10 10.05 -39.58 -0.40 -1.49 16 14 C -0.12 -1.11 10.05 -39.58 -0.40 -1.50 16 15 C -0.10 -1.01 9.70 -39.58 -0.38 -1.39 16 16 C 0.06 0.78 6.23 -2.84 -0.02 0.76 16 17 C 0.54 13.67 6.07 -12.98 -0.08 13.60 16 18 O -0.60 -16.55 10.79 -0.85 -0.01 -16.56 16 19 C -0.60 -16.05 9.19 -35.63 -0.33 -16.37 16 20 H 0.08 1.97 6.15 -52.49 -0.32 1.65 16 21 C 0.06 1.70 5.52 -17.37 -0.10 1.61 16 22 N -0.83 -23.49 13.64 55.55 0.76 -22.73 16 23 Si 1.13 29.57 25.94 -169.99 -4.41 25.16 16 24 H -0.32 -8.27 7.11 56.52 0.40 -7.87 16 25 H -0.28 -7.54 6.83 56.52 0.39 -7.15 16 26 H -0.29 -7.75 7.11 56.52 0.40 -7.35 16 27 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.68 6.04 -51.93 -0.31 0.36 16 29 H 0.07 1.32 6.04 -51.93 -0.31 1.00 16 30 H 0.07 0.97 8.03 -51.93 -0.42 0.56 16 31 H 0.08 1.64 7.42 -51.93 -0.39 1.26 16 32 H 0.38 8.07 7.12 45.56 0.32 8.39 16 33 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 34 H 0.08 1.01 7.22 -51.93 -0.38 0.63 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.05 0.64 7.00 -51.93 -0.36 0.28 16 37 H 0.08 0.88 7.98 -51.93 -0.41 0.46 16 38 H 0.05 0.62 7.79 -51.93 -0.40 0.22 16 39 H 0.12 1.20 7.50 -52.48 -0.39 0.80 16 40 H 0.12 0.89 8.06 -52.48 -0.42 0.46 16 41 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 42 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 43 H 0.12 1.08 8.06 -52.48 -0.42 0.65 16 44 H 0.09 1.12 7.82 -51.93 -0.41 0.71 16 45 H 0.07 1.00 7.47 -51.92 -0.39 0.61 16 46 H 0.28 7.50 8.72 -40.82 -0.36 7.14 16 LS Contribution 361.99 15.07 5.46 5.46 Total: -1.00 -30.92 361.99 -9.35 -40.26 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -6.30 Total: 4.91 kcal Atomic # 6 Polarization: -1.56 SS G_CDS: -2.65 Total: -4.22 kcal Atomic # 7 Polarization: -42.91 SS G_CDS: -0.91 Total: -43.82 kcal Atomic # 8 Polarization: -27.23 SS G_CDS: -0.52 Total: -27.76 kcal Atomic # 14 Polarization: 29.57 SS G_CDS: -4.41 Total: 25.16 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.92 -9.35 -40.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188082503.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.523 kcal (2) G-P(sol) polarization free energy of solvation -30.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds