Wall clock time and date at job start Tue Mar 31 2020 05:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46503 * 120.00094 * 2 1 4 4 C 1.52995 * 109.47077 * 269.99690 * 3 2 1 5 5 O 1.42902 * 110.62833 * 303.10788 * 4 3 2 6 6 C 1.55147 * 110.70588 * 66.40065 * 4 3 2 7 7 C 1.54898 * 101.65365 * 154.03760 * 6 4 3 8 8 N 1.47846 * 104.79512 * 322.93080 * 7 6 4 9 9 C 1.46899 * 111.00134 * 146.36537 * 8 7 6 10 10 C 1.50711 * 109.46912 * 69.15424 * 9 8 7 11 11 C 1.38231 * 120.00221 * 269.72541 * 10 9 8 12 12 C 1.38232 * 119.99922 * 179.78955 * 11 10 9 13 13 C 1.38232 * 120.00267 * 0.46534 * 12 11 10 14 14 C 1.38238 * 119.99817 * 359.76585 * 13 12 11 15 15 C 1.38234 * 119.99919 * 0.02823 * 14 13 12 16 16 C 1.47433 * 108.56867 * 24.09568 * 8 7 6 17 17 C 1.34786 * 119.99980 * 179.97438 * 2 1 3 18 18 O 1.21686 * 119.99696 * 180.02562 * 17 2 1 19 19 C 1.46373 * 119.99966 * 0.02562 * 17 2 1 20 20 H 1.07999 * 119.99983 * 4.84420 * 19 17 2 21 21 C 1.40045 * 119.99962 * 184.84619 * 19 17 2 22 22 N 1.30665 * 120.00095 * 184.05682 * 21 19 17 23 23 Si 1.86807 * 119.99934 * 4.05352 * 21 19 17 24 24 H 1.48503 * 109.46909 * 180.02562 * 23 21 19 25 25 H 1.48496 * 109.47261 * 300.00376 * 23 21 19 26 26 H 1.48504 * 109.47011 * 60.00419 * 23 21 19 27 27 H 1.08997 * 109.47263 * 269.99934 * 1 2 3 28 28 H 1.08994 * 109.47020 * 30.00116 * 1 2 3 29 29 H 1.08998 * 109.46811 * 150.00422 * 1 2 3 30 30 H 1.08996 * 109.46799 * 29.99702 * 3 2 1 31 31 H 1.08998 * 109.47144 * 149.99862 * 3 2 1 32 32 H 0.96695 * 114.00395 * 59.29910 * 5 4 3 33 33 H 1.08999 * 110.98869 * 272.12946 * 6 4 3 34 34 H 1.09002 * 110.98659 * 35.94284 * 6 4 3 35 35 H 1.08998 * 110.37349 * 204.10420 * 7 6 4 36 36 H 1.09003 * 110.47118 * 81.80489 * 7 6 4 37 37 H 1.09002 * 109.47698 * 189.15269 * 9 8 7 38 38 H 1.08996 * 109.47397 * 309.15809 * 9 8 7 39 39 H 1.08003 * 119.99736 * 0.02562 * 11 10 9 40 40 H 1.08003 * 119.99802 * 180.25268 * 12 11 10 41 41 H 1.07997 * 120.00162 * 179.78901 * 13 12 11 42 42 H 1.07995 * 120.00073 * 179.97438 * 14 13 12 43 43 H 1.08003 * 119.99840 * 179.97438 * 15 14 13 44 44 H 1.09005 * 109.89137 * 239.60641 * 16 8 7 45 45 H 1.09009 * 109.89008 * 118.41965 * 16 8 7 46 46 H 0.97004 * 120.00406 * 354.69932 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7103 -1.4425 5 8 3.1623 0.6991 -2.1606 6 6 1.1184 2.0593 -2.1534 7 6 1.5924 3.0644 -3.2324 8 7 2.6576 3.8505 -2.5742 9 6 3.6990 4.2351 -3.5362 10 6 3.1414 5.2495 -4.5013 11 6 2.5439 4.8310 -5.6754 12 6 2.0287 5.7612 -6.5585 13 6 2.1194 7.1105 -6.2721 14 6 2.7212 7.5293 -5.1002 15 6 3.2327 6.5989 -4.2150 16 6 3.2239 3.0465 -1.4758 17 6 2.1389 -1.1673 0.0005 18 8 3.3558 -1.1672 0.0010 19 6 1.4070 -2.4349 0.0005 20 1 0.3300 -2.4366 -0.0789 21 6 2.1035 -3.6455 0.1035 22 7 1.4585 -4.7791 0.0239 23 14 3.9546 -3.6398 0.3547 24 1 4.4481 -5.0383 0.4308 25 1 4.6066 -2.9466 -0.7852 26 1 4.2805 -2.9299 1.6177 27 1 -0.3633 0.0000 1.0276 28 1 -0.3633 0.8899 -0.5138 29 1 -0.3633 -0.8900 -0.5138 30 1 1.6084 2.0283 0.5138 31 1 3.1499 1.1384 0.5138 32 1 2.7025 -0.1506 -2.2013 33 1 0.6770 1.1741 -2.6113 34 1 0.4190 2.5294 -1.4620 35 1 0.7708 3.7150 -3.5320 36 1 1.9913 2.5349 -4.0977 37 1 4.5449 4.6682 -3.0023 38 1 4.0291 3.3538 -4.0860 39 1 2.4763 3.7769 -5.9010 40 1 1.5582 5.4340 -7.4740 41 1 1.7198 7.8374 -6.9637 42 1 2.7925 8.5835 -4.8765 43 1 3.7032 6.9261 -3.2996 44 1 3.0977 3.5712 -0.5288 45 1 4.2819 2.8594 -1.6604 46 1 0.4899 -4.7834 -0.0293 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188082503.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:26 Heat of formation + Delta-G solvation = -82.066191 kcal Electronic energy + Delta-G solvation = -27221.498042 eV Core-core repulsion = 23495.593754 eV Total energy + Delta-G solvation = -3725.904288 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.28032 -40.23737 -39.36259 -36.94286 -35.79793 -35.09057 -33.57197 -31.78068 -31.19218 -30.71961 -28.59959 -27.72996 -26.61501 -25.10882 -23.50193 -22.66804 -21.85015 -21.53741 -21.02527 -19.38337 -18.11641 -17.55121 -17.46656 -17.12040 -16.93753 -16.50687 -16.12571 -15.77523 -15.69871 -15.46581 -15.08105 -14.62651 -14.41606 -14.27687 -14.22632 -13.98399 -13.86918 -13.62129 -13.56257 -13.37870 -13.16840 -12.98685 -12.63450 -12.54893 -12.46290 -12.36072 -12.20733 -11.94724 -11.75173 -11.69803 -11.20136 -11.17444 -10.99191 -10.00298 -9.79674 -9.74272 -9.42589 -9.25996 -9.16981 -7.10391 0.44006 0.53539 1.43362 1.55080 1.95979 2.20638 2.34952 2.63527 2.74923 3.10028 3.16042 3.29783 3.55414 3.79219 3.83770 3.92412 3.98362 4.17151 4.20078 4.23837 4.32845 4.34304 4.43128 4.51116 4.60003 4.60512 4.68386 4.71992 4.78189 4.81114 4.83683 4.91556 4.95182 5.00038 5.09651 5.13117 5.19358 5.36122 5.57896 5.58354 5.64773 5.70369 5.84570 5.85817 5.95473 6.10955 6.14988 6.59406 6.67372 7.00056 7.99558 8.14240 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.027492 B = 0.002847 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.222239 B = 9832.792543 C = 9962.039862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.634 5.634 3 C 0.107 3.893 4 C 0.092 3.908 5 O -0.565 6.565 6 C -0.142 4.142 7 C 0.055 3.945 8 N -0.513 5.513 9 C 0.089 3.911 10 C -0.086 4.086 11 C -0.127 4.127 12 C -0.129 4.129 13 C -0.127 4.127 14 C -0.126 4.126 15 C -0.110 4.110 16 C 0.060 3.940 17 C 0.546 3.454 18 O -0.629 6.629 19 C -0.610 4.610 20 H 0.076 0.924 21 C 0.031 3.969 22 N -0.851 5.851 23 Si 1.161 2.839 24 H -0.315 1.315 25 H -0.296 1.296 26 H -0.300 1.300 27 H 0.046 0.954 28 H 0.088 0.912 29 H 0.057 0.943 30 H 0.106 0.894 31 H 0.058 0.942 32 H 0.372 0.628 33 H 0.068 0.932 34 H 0.100 0.900 35 H 0.087 0.913 36 H 0.036 0.964 37 H 0.089 0.911 38 H 0.031 0.969 39 H 0.113 0.887 40 H 0.136 0.864 41 H 0.142 0.858 42 H 0.142 0.858 43 H 0.130 0.870 44 H 0.111 0.889 45 H 0.055 0.945 46 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.795 24.207 -9.187 26.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.367 5.367 3 C -0.017 4.017 4 C 0.049 3.951 5 O -0.372 6.372 6 C -0.180 4.180 7 C -0.072 4.072 8 N -0.237 5.237 9 C -0.039 4.039 10 C -0.086 4.086 11 C -0.146 4.146 12 C -0.147 4.147 13 C -0.145 4.145 14 C -0.144 4.144 15 C -0.128 4.128 16 C -0.068 4.068 17 C 0.354 3.646 18 O -0.524 6.524 19 C -0.647 4.647 20 H 0.094 0.906 21 C -0.184 4.184 22 N -0.479 5.479 23 Si 0.995 3.005 24 H -0.246 1.246 25 H -0.224 1.224 26 H -0.228 1.228 27 H 0.065 0.935 28 H 0.106 0.894 29 H 0.075 0.925 30 H 0.124 0.876 31 H 0.076 0.924 32 H 0.220 0.780 33 H 0.087 0.913 34 H 0.119 0.881 35 H 0.105 0.895 36 H 0.054 0.946 37 H 0.107 0.893 38 H 0.050 0.950 39 H 0.131 0.869 40 H 0.154 0.846 41 H 0.160 0.840 42 H 0.160 0.840 43 H 0.148 0.852 44 H 0.129 0.871 45 H 0.074 0.926 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.789 24.192 -8.939 25.803 hybrid contribution -1.661 -0.849 -0.344 1.897 sum -2.450 23.343 -9.283 25.241 Atomic orbital electron populations 1.21700 0.79042 1.02713 1.01293 1.47458 1.07005 1.04690 1.77545 1.21860 0.97698 0.86251 0.95941 1.23006 0.92115 0.88438 0.91521 1.86402 1.50410 1.23748 1.76615 1.23340 0.96948 0.99215 0.98512 1.22952 0.94754 0.93964 0.95533 1.63823 1.10656 1.39504 1.09703 1.21247 0.93872 0.96026 0.92736 1.19764 0.99433 0.94579 0.94832 1.21191 0.98984 0.99750 0.94663 1.21373 0.99874 0.93549 0.99864 1.21472 0.99239 0.96052 0.97709 1.21455 0.98122 1.00465 0.94354 1.21212 0.99692 0.92141 0.99783 1.22806 0.97722 0.89384 0.96866 1.18403 0.86207 0.84625 0.75380 1.90159 1.15833 1.85712 1.60649 1.22332 0.96081 0.91394 1.54850 0.90570 1.27653 1.10933 0.91139 0.88640 1.70661 1.11549 1.28381 1.37355 0.81891 0.70023 0.70939 0.77682 1.24639 1.22424 1.22772 0.93496 0.89383 0.92454 0.87581 0.92351 0.77964 0.91290 0.88137 0.89497 0.94551 0.89268 0.95042 0.86887 0.84643 0.83995 0.83983 0.85160 0.87114 0.92639 0.91125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.97 9.87 127.77 1.26 4.23 16 2 N -0.63 -24.54 2.58 -851.91 -2.20 -26.74 16 3 C 0.11 3.48 4.59 86.38 0.40 3.88 16 4 C 0.09 2.80 1.03 -9.61 -0.01 2.79 16 5 O -0.57 -22.37 12.46 -143.19 -1.78 -24.15 16 6 C -0.14 -3.54 4.72 31.98 0.15 -3.39 16 7 C 0.06 1.32 5.61 86.77 0.49 1.81 16 8 N -0.51 -12.17 5.15 -890.11 -4.59 -16.75 16 9 C 0.09 2.02 4.72 85.56 0.40 2.42 16 10 C -0.09 -1.78 5.09 -19.86 -0.10 -1.88 16 11 C -0.13 -2.57 8.93 22.27 0.20 -2.37 16 12 C -0.13 -2.17 10.05 22.27 0.22 -1.94 16 13 C -0.13 -1.88 10.05 22.27 0.22 -1.65 16 14 C -0.13 -1.92 10.05 22.27 0.22 -1.70 16 15 C -0.11 -1.99 9.70 22.27 0.22 -1.77 16 16 C 0.06 1.57 6.23 86.65 0.54 2.11 16 17 C 0.55 27.39 6.07 86.36 0.52 27.92 16 18 O -0.63 -34.90 10.79 1.48 0.02 -34.88 16 19 C -0.61 -32.96 9.19 24.83 0.23 -32.73 16 20 H 0.08 4.02 6.15 -2.91 -0.02 4.00 16 21 C 0.03 1.75 5.52 85.30 0.47 2.23 16 22 N -0.85 -48.43 13.64 21.83 0.30 -48.13 16 23 Si 1.16 61.13 25.94 68.60 1.78 62.91 16 24 H -0.32 -15.85 7.11 99.48 0.71 -15.15 16 25 H -0.30 -16.24 6.83 99.48 0.68 -15.56 16 26 H -0.30 -15.98 7.11 99.48 0.71 -15.27 16 27 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.09 2.06 6.04 -2.39 -0.01 2.05 16 29 H 0.06 1.99 6.04 -2.39 -0.01 1.98 16 30 H 0.11 2.66 8.03 -2.39 -0.02 2.64 16 31 H 0.06 2.24 7.42 -2.39 -0.02 2.22 16 32 H 0.37 16.05 7.12 -74.06 -0.53 15.52 16 33 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.10 2.11 7.22 -2.39 -0.02 2.09 16 35 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.04 0.96 7.00 -2.39 -0.02 0.94 16 37 H 0.09 1.85 7.98 -2.39 -0.02 1.83 16 38 H 0.03 0.82 7.79 -2.39 -0.02 0.80 16 39 H 0.11 2.30 7.50 -2.91 -0.02 2.27 16 40 H 0.14 1.74 8.06 -2.91 -0.02 1.72 16 41 H 0.14 1.38 8.06 -2.91 -0.02 1.35 16 42 H 0.14 1.46 8.06 -2.91 -0.02 1.44 16 43 H 0.13 2.04 8.06 -2.91 -0.02 2.02 16 44 H 0.11 2.44 7.82 -2.38 -0.02 2.42 16 45 H 0.06 1.59 7.47 -2.38 -0.02 1.58 16 46 H 0.28 15.20 8.72 -92.71 -0.81 14.39 16 Total: -1.00 -66.82 361.99 -0.64 -67.46 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: 0.39 Total: 20.35 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: 5.44 Total: -0.06 kcal Atomic # 7 Polarization: -85.14 SS G_CDS: -6.48 Total: -91.62 kcal Atomic # 8 Polarization: -57.27 SS G_CDS: -1.77 Total: -59.04 kcal Atomic # 14 Polarization: 61.13 SS G_CDS: 1.78 Total: 62.91 kcal Total: -66.82 -0.64 -67.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188082503.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.605 kcal (2) G-P(sol) polarization free energy of solvation -66.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds