Wall clock time and date at job start Tue Mar 31 2020 04:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.46501 * 120.00243 * 2 1 4 4 C 1.53004 * 109.47088 * 269.99921 * 3 2 1 5 5 N 1.46501 * 109.47088 * 179.97438 * 4 3 2 6 6 C 1.34945 * 126.03565 * 125.00490 * 5 4 3 7 7 C 1.35309 * 107.74599 * 179.97438 * 6 5 4 8 8 C 1.39870 * 107.91918 * 359.97438 * 7 6 5 9 9 N 1.30835 * 108.20490 * 359.74227 * 8 7 6 10 10 C 1.34780 * 119.99750 * 179.97438 * 2 1 3 11 11 O 1.21841 * 120.00152 * 179.97438 * 10 2 1 12 12 N 1.33828 * 120.00103 * 359.97438 * 10 2 1 13 13 C 1.32939 * 120.00263 * 179.97438 * 12 10 2 14 14 C 1.41205 * 126.37409 * 359.97438 * 13 12 10 15 15 C 1.34964 * 108.24132 * 180.02562 * 14 13 12 16 16 N 1.36453 * 108.94829 * 0.02562 * 15 14 13 17 17 C 1.46495 * 125.85252 * 179.97438 * 16 15 14 18 18 C 1.50703 * 109.47426 * 85.02220 * 17 16 15 19 19 H 1.08001 * 119.99569 * 0.02562 * 18 17 16 20 20 C 1.37875 * 120.00060 * 179.97438 * 18 17 16 21 21 N 1.31511 * 119.99918 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00042 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46760 * 90.00054 * 22 20 18 24 24 H 1.48495 * 109.47204 * 210.00296 * 22 20 18 25 25 H 1.48496 * 109.47071 * 330.00513 * 22 20 18 26 26 N 1.37418 * 126.38306 * 180.02562 * 13 12 10 27 27 H 0.97005 * 126.35836 * 359.96579 * 26 13 12 28 28 H 1.09001 * 109.47257 * 270.00439 * 1 2 3 29 29 H 1.09007 * 109.47164 * 29.99825 * 1 2 3 30 30 H 1.09003 * 109.47434 * 149.99954 * 1 2 3 31 31 H 1.08996 * 109.47089 * 29.99597 * 3 2 1 32 32 H 1.09002 * 109.46838 * 150.00148 * 3 2 1 33 33 H 1.09009 * 109.47046 * 300.00123 * 4 3 2 34 34 H 1.08999 * 109.47012 * 59.99858 * 4 3 2 35 35 H 1.08003 * 126.12848 * 359.94608 * 6 5 4 36 36 H 1.08003 * 126.04450 * 179.97438 * 7 6 5 37 37 H 1.08007 * 125.89618 * 180.02562 * 8 7 6 38 38 H 1.08002 * 125.88050 * 0.02562 * 14 13 12 39 39 H 1.07999 * 125.52317 * 179.74257 * 15 14 13 40 40 H 1.08997 * 109.46982 * 205.02317 * 17 16 15 41 41 H 1.09004 * 109.47194 * 325.01878 * 17 16 15 42 42 H 0.97007 * 120.00218 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 7 3.1845 2.9794 -1.4425 6 6 4.3555 3.2204 -2.0684 7 6 4.6959 4.5072 -1.8253 8 6 3.6984 5.0721 -1.0239 9 7 2.7890 4.1589 -0.7987 10 6 2.1388 -1.1673 0.0005 11 8 3.3572 -1.1673 0.0001 12 7 1.4696 -2.3262 0.0016 13 6 2.1342 -3.4776 0.0016 14 6 3.5375 -3.6344 0.0000 15 6 3.8150 -4.9552 0.0000 16 7 2.6430 -5.6542 0.0009 17 6 2.5143 -7.1135 0.0007 18 6 2.5942 -7.6251 1.4159 19 1 2.7272 -6.9324 2.2338 20 6 2.4966 -8.9774 1.6666 21 7 2.3342 -9.8207 0.6707 22 14 2.5964 -9.6116 3.4208 23 1 1.2337 -9.6565 4.0092 24 1 3.1809 -10.9767 3.4211 25 1 3.4539 -8.7058 4.2267 26 7 1.5836 -4.7366 0.0021 27 1 0.6374 -4.9505 0.0029 28 1 -0.3634 0.0001 1.0277 29 1 -0.3634 0.8901 -0.5138 30 1 -0.3634 -0.8900 -0.5138 31 1 1.6084 2.0284 0.5138 32 1 3.1499 1.1383 0.5138 33 1 3.0416 0.9506 -1.9564 34 1 1.5001 1.8407 -1.9564 35 1 4.9202 2.5127 -2.6573 36 1 5.5813 5.0094 -2.1863 37 1 3.6796 6.0883 -0.6584 38 1 4.2638 -2.8351 -0.0010 39 1 4.8042 -5.3887 -0.0049 40 1 1.5544 -7.3934 -0.4332 41 1 3.3206 -7.5492 -0.5894 42 1 2.2659 -10.7722 0.8470 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000438313599.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:39:22 Heat of formation + Delta-G solvation = 164.833153 kcal Electronic energy + Delta-G solvation = -25277.354549 eV Core-core repulsion = 21490.909027 eV Total energy + Delta-G solvation = -3786.445521 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.155 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.19958 -40.83438 -39.16624 -35.89145 -34.20612 -33.41381 -32.95078 -31.09845 -30.72645 -30.22680 -28.71484 -26.86376 -26.06094 -24.14346 -22.97999 -21.52384 -21.25578 -21.11342 -20.57145 -19.04243 -17.39626 -17.23480 -16.88287 -16.29117 -15.99246 -15.34130 -15.07847 -14.88933 -14.64129 -14.39337 -14.21951 -14.02082 -13.48571 -13.27733 -13.08711 -12.92047 -12.81896 -12.72193 -12.45143 -12.31458 -12.02799 -11.93174 -11.38458 -11.26646 -11.08791 -10.72291 -10.56013 -10.44628 -9.78135 -9.61392 -9.57016 -9.08068 -8.94460 -8.78233 -8.41536 -8.31349 -6.94424 -6.51433 -4.68055 1.71820 1.82106 2.02590 2.36663 2.75251 3.03989 3.08433 3.12320 3.16542 3.42409 4.04144 4.33384 4.42880 4.58046 4.77613 4.79093 4.86112 4.99880 5.20218 5.23178 5.30279 5.42643 5.49505 5.63943 5.72657 5.78233 5.89532 5.92378 5.95366 6.02324 6.16249 6.49020 6.52661 6.53959 6.67470 6.86888 7.03239 7.21077 7.36488 7.48800 7.57458 7.60900 7.76638 8.14009 8.35859 8.42241 9.02729 9.49674 10.50152 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.031864 B = 0.002095 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.530275 B =13362.410776 C =13615.255836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.616 5.616 3 C 0.129 3.871 4 C 0.119 3.881 5 N -0.365 5.365 6 C 0.060 3.940 7 C -0.281 4.281 8 C 0.041 3.959 9 N -0.299 5.299 10 C 0.686 3.314 11 O -0.629 6.629 12 N -0.709 5.709 13 C 0.486 3.514 14 C -0.334 4.334 15 C 0.162 3.838 16 N -0.344 5.344 17 C 0.255 3.745 18 C -0.558 4.558 19 H 0.070 0.930 20 C 0.070 3.930 21 N -0.886 5.886 22 Si 0.910 3.090 23 H -0.276 1.276 24 H -0.281 1.281 25 H -0.270 1.270 26 N -0.470 5.470 27 H 0.444 0.556 28 H 0.044 0.956 29 H 0.052 0.948 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.100 0.900 34 H 0.082 0.918 35 H 0.173 0.827 36 H 0.145 0.855 37 H 0.181 0.819 38 H 0.183 0.817 39 H 0.187 0.813 40 H 0.051 0.949 41 H 0.068 0.932 42 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.815 17.711 -5.611 18.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.353 5.353 3 C 0.003 3.997 4 C -0.004 4.004 5 N -0.147 5.147 6 C -0.087 4.087 7 C -0.311 4.311 8 C -0.145 4.145 9 N -0.121 5.121 10 C 0.387 3.613 11 O -0.512 6.512 12 N -0.473 5.473 13 C 0.233 3.767 14 C -0.367 4.367 15 C 0.017 3.983 16 N -0.130 5.130 17 C 0.139 3.861 18 C -0.596 4.596 19 H 0.088 0.912 20 C -0.135 4.135 21 N -0.523 5.523 22 Si 0.736 3.264 23 H -0.202 1.202 24 H -0.207 1.207 25 H -0.194 1.194 26 N -0.192 5.192 27 H 0.291 0.709 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.104 0.896 33 H 0.118 0.882 34 H 0.101 0.899 35 H 0.190 0.810 36 H 0.163 0.837 37 H 0.198 0.802 38 H 0.200 0.800 39 H 0.204 0.796 40 H 0.069 0.931 41 H 0.086 0.914 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.768 16.811 -5.091 17.582 hybrid contribution 0.946 -0.445 0.490 1.155 sum 0.179 16.366 -4.601 17.002 Atomic orbital electron populations 1.21502 0.79384 1.02181 1.01109 1.46501 1.06504 1.03678 1.78585 1.21298 0.98900 0.85168 0.94319 1.22252 0.97238 0.80406 1.00539 1.48699 1.17362 1.09715 1.38925 1.22636 0.89086 0.98234 0.98766 1.21486 1.04327 0.95067 1.10221 1.23861 0.92781 0.99331 0.98556 1.77313 1.23795 0.91695 1.19257 1.16599 0.83853 0.83759 0.77133 1.90734 1.14659 1.87893 1.57870 1.68072 1.37472 0.94655 1.47141 1.18726 0.88991 0.84300 0.84718 1.22384 0.96007 0.96188 1.22091 1.22816 0.90364 0.92292 0.92804 1.48008 0.97118 1.04072 1.63806 1.20049 1.00568 0.66062 0.99464 1.21414 1.53672 0.92800 0.91755 0.91224 1.24956 0.93817 0.96257 0.98500 1.69895 1.47300 1.03667 1.31446 0.86290 0.78742 0.78322 0.83044 1.20205 1.20670 1.19430 1.44449 1.04069 1.00084 1.70644 0.70854 0.93767 0.92876 0.89948 0.89904 0.89646 0.88158 0.89926 0.81023 0.83695 0.80232 0.80040 0.79622 0.93094 0.91388 0.91834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.26 10.41 59.84 0.62 1.88 16 2 N -0.62 -9.38 2.87 -187.58 -0.54 -9.91 16 3 C 0.13 1.73 5.60 -4.04 -0.02 1.70 16 4 C 0.12 1.39 6.83 -4.04 -0.03 1.36 16 5 N -0.36 -4.41 3.68 -61.36 -0.23 -4.64 16 6 C 0.06 0.62 11.45 -17.23 -0.20 0.42 16 7 C -0.28 -2.73 10.80 -40.02 -0.43 -3.16 16 8 C 0.04 0.42 12.02 -17.37 -0.21 0.21 16 9 N -0.30 -3.82 12.42 30.63 0.38 -3.44 16 10 C 0.69 12.98 8.19 -87.76 -0.72 12.26 16 11 O -0.63 -13.11 12.84 5.06 0.07 -13.04 16 12 N -0.71 -13.44 9.23 -15.79 -0.15 -13.59 16 13 C 0.49 9.13 8.07 -155.29 -1.25 7.87 16 14 C -0.33 -6.07 9.52 -39.62 -0.38 -6.44 16 15 C 0.16 2.68 11.45 -16.66 -0.19 2.49 16 16 N -0.34 -6.23 3.63 -62.24 -0.23 -6.45 16 17 C 0.25 5.20 6.19 -5.19 -0.03 5.17 16 18 C -0.56 -13.11 9.39 -34.44 -0.32 -13.43 16 19 H 0.07 1.69 7.81 -52.49 -0.41 1.28 16 20 C 0.07 1.69 5.46 -17.82 -0.10 1.59 16 21 N -0.89 -22.27 13.29 55.43 0.74 -21.54 16 22 Si 0.91 19.13 29.54 -169.99 -5.02 14.11 16 23 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 24 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 25 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 26 N -0.47 -8.13 7.38 31.33 0.23 -7.90 16 27 H 0.44 6.75 8.96 -182.55 -1.64 5.12 16 28 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.05 0.52 8.07 -51.93 -0.42 0.10 16 30 H 0.08 1.08 7.31 -51.93 -0.38 0.70 16 31 H 0.08 1.04 8.07 -51.93 -0.42 0.62 16 32 H 0.09 1.33 7.42 -51.93 -0.39 0.95 16 33 H 0.10 1.21 8.07 -51.92 -0.42 0.79 16 34 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.17 1.33 8.06 -52.48 -0.42 0.90 16 36 H 0.15 1.05 8.06 -52.48 -0.42 0.63 16 37 H 0.18 1.26 8.06 -52.48 -0.42 0.84 16 38 H 0.18 3.49 5.77 -52.49 -0.30 3.18 16 39 H 0.19 2.42 8.06 -52.49 -0.42 1.99 16 40 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 41 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 42 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 LS Contribution 366.18 15.07 5.52 5.52 Total: -1.00 -30.27 366.18 -9.37 -39.64 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: -6.89 Total: 9.30 kcal Atomic # 6 Polarization: 15.19 SS G_CDS: -3.26 Total: 11.93 kcal Atomic # 7 Polarization: -67.68 SS G_CDS: 0.21 Total: -67.47 kcal Atomic # 8 Polarization: -13.11 SS G_CDS: 0.07 Total: -13.04 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -5.02 Total: 14.11 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.27 -9.37 -39.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000438313599.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 204.478 kcal (2) G-P(sol) polarization free energy of solvation -30.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 174.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 164.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds