Wall clock time and date at job start Tue Mar 31 2020 04:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.46501 * 120.00243 * 2 1 4 4 C 1.53004 * 109.47088 * 269.99921 * 3 2 1 5 5 N 1.46501 * 109.47088 * 179.97438 * 4 3 2 6 6 C 1.34945 * 126.03565 * 125.00490 * 5 4 3 7 7 C 1.35309 * 107.74599 * 179.97438 * 6 5 4 8 8 C 1.39870 * 107.91918 * 359.97438 * 7 6 5 9 9 N 1.30835 * 108.20490 * 359.74227 * 8 7 6 10 10 C 1.34780 * 119.99750 * 179.97438 * 2 1 3 11 11 O 1.21841 * 120.00152 * 179.97438 * 10 2 1 12 12 N 1.33828 * 120.00103 * 359.97438 * 10 2 1 13 13 C 1.32939 * 120.00263 * 179.97438 * 12 10 2 14 14 C 1.41205 * 126.37409 * 359.97438 * 13 12 10 15 15 C 1.34964 * 108.24132 * 180.02562 * 14 13 12 16 16 N 1.36453 * 108.94829 * 0.02562 * 15 14 13 17 17 C 1.46495 * 125.85252 * 179.97438 * 16 15 14 18 18 C 1.50703 * 109.47426 * 85.02220 * 17 16 15 19 19 H 1.08001 * 119.99569 * 0.02562 * 18 17 16 20 20 C 1.37875 * 120.00060 * 179.97438 * 18 17 16 21 21 N 1.31511 * 119.99918 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00042 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46760 * 90.00054 * 22 20 18 24 24 H 1.48495 * 109.47204 * 210.00296 * 22 20 18 25 25 H 1.48496 * 109.47071 * 330.00513 * 22 20 18 26 26 N 1.37418 * 126.38306 * 180.02562 * 13 12 10 27 27 H 0.97005 * 126.35836 * 359.96579 * 26 13 12 28 28 H 1.09001 * 109.47257 * 270.00439 * 1 2 3 29 29 H 1.09007 * 109.47164 * 29.99825 * 1 2 3 30 30 H 1.09003 * 109.47434 * 149.99954 * 1 2 3 31 31 H 1.08996 * 109.47089 * 29.99597 * 3 2 1 32 32 H 1.09002 * 109.46838 * 150.00148 * 3 2 1 33 33 H 1.09009 * 109.47046 * 300.00123 * 4 3 2 34 34 H 1.08999 * 109.47012 * 59.99858 * 4 3 2 35 35 H 1.08003 * 126.12848 * 359.94608 * 6 5 4 36 36 H 1.08003 * 126.04450 * 179.97438 * 7 6 5 37 37 H 1.08007 * 125.89618 * 180.02562 * 8 7 6 38 38 H 1.08002 * 125.88050 * 0.02562 * 14 13 12 39 39 H 1.07999 * 125.52317 * 179.74257 * 15 14 13 40 40 H 1.08997 * 109.46982 * 205.02317 * 17 16 15 41 41 H 1.09004 * 109.47194 * 325.01878 * 17 16 15 42 42 H 0.97007 * 120.00218 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 7 3.1845 2.9794 -1.4425 6 6 4.3555 3.2204 -2.0684 7 6 4.6959 4.5072 -1.8253 8 6 3.6984 5.0721 -1.0239 9 7 2.7890 4.1589 -0.7987 10 6 2.1388 -1.1673 0.0005 11 8 3.3572 -1.1673 0.0001 12 7 1.4696 -2.3262 0.0016 13 6 2.1342 -3.4776 0.0016 14 6 3.5375 -3.6344 0.0000 15 6 3.8150 -4.9552 0.0000 16 7 2.6430 -5.6542 0.0009 17 6 2.5143 -7.1135 0.0007 18 6 2.5942 -7.6251 1.4159 19 1 2.7272 -6.9324 2.2338 20 6 2.4966 -8.9774 1.6666 21 7 2.3342 -9.8207 0.6707 22 14 2.5964 -9.6116 3.4208 23 1 1.2337 -9.6565 4.0092 24 1 3.1809 -10.9767 3.4211 25 1 3.4539 -8.7058 4.2267 26 7 1.5836 -4.7366 0.0021 27 1 0.6374 -4.9505 0.0029 28 1 -0.3634 0.0001 1.0277 29 1 -0.3634 0.8901 -0.5138 30 1 -0.3634 -0.8900 -0.5138 31 1 1.6084 2.0284 0.5138 32 1 3.1499 1.1383 0.5138 33 1 3.0416 0.9506 -1.9564 34 1 1.5001 1.8407 -1.9564 35 1 4.9202 2.5127 -2.6573 36 1 5.5813 5.0094 -2.1863 37 1 3.6796 6.0883 -0.6584 38 1 4.2638 -2.8351 -0.0010 39 1 4.8042 -5.3887 -0.0049 40 1 1.5544 -7.3934 -0.4332 41 1 3.3206 -7.5492 -0.5894 42 1 2.2659 -10.7722 0.8470 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000438313599.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:39:21 Heat of formation + Delta-G solvation = 146.893394 kcal Electronic energy + Delta-G solvation = -25278.132475 eV Core-core repulsion = 21490.909027 eV Total energy + Delta-G solvation = -3787.223448 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.155 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.26914 -42.00251 -40.51869 -37.12885 -35.83745 -34.68456 -34.28100 -32.49567 -32.24352 -31.08649 -29.71188 -28.42767 -27.21996 -25.40244 -24.47486 -22.84956 -22.58652 -21.94049 -21.48660 -20.36692 -18.90189 -18.43740 -18.26428 -17.61778 -17.32966 -16.64172 -16.57065 -16.02564 -15.91230 -15.66169 -15.41131 -15.11486 -14.66442 -14.46483 -14.37009 -14.10861 -14.06593 -13.87473 -13.65634 -13.58251 -13.28584 -13.09124 -12.95082 -12.75004 -12.31733 -12.29504 -12.07009 -11.56877 -11.23511 -11.20856 -10.77205 -10.49976 -10.44366 -9.89099 -9.71489 -9.41278 -8.54063 -8.20013 -6.55271 0.31025 0.60889 1.00066 1.37800 1.42357 1.48068 1.51065 1.67911 1.99879 2.23998 2.31908 2.92273 2.99387 3.09175 3.55629 3.83821 3.93707 4.06410 4.13155 4.23378 4.25418 4.41992 4.45383 4.52752 4.61431 4.77579 4.79401 4.87620 4.89216 4.92108 4.97650 5.07881 5.19022 5.28425 5.52082 5.71596 5.73924 5.82228 5.85519 6.11806 6.14673 6.31873 6.57229 6.79581 6.80579 6.95821 7.18512 8.06142 8.66600 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.031864 B = 0.002095 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.530275 B =13362.410776 C =13615.255836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.614 5.614 3 C 0.137 3.863 4 C 0.130 3.870 5 N -0.379 5.379 6 C 0.047 3.953 7 C -0.283 4.283 8 C 0.038 3.962 9 N -0.334 5.334 10 C 0.673 3.327 11 O -0.656 6.656 12 N -0.714 5.714 13 C 0.472 3.528 14 C -0.345 4.345 15 C 0.176 3.824 16 N -0.350 5.350 17 C 0.268 3.732 18 C -0.565 4.565 19 H 0.059 0.941 20 C 0.030 3.970 21 N -0.912 5.912 22 Si 0.962 3.038 23 H -0.277 1.277 24 H -0.278 1.278 25 H -0.271 1.271 26 N -0.465 5.465 27 H 0.452 0.548 28 H 0.047 0.953 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.093 0.907 32 H 0.059 0.941 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.193 0.807 36 H 0.170 0.830 37 H 0.209 0.791 38 H 0.172 0.828 39 H 0.222 0.778 40 H 0.044 0.956 41 H 0.072 0.928 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.073 18.591 -5.702 19.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.349 5.349 3 C 0.012 3.988 4 C 0.007 3.993 5 N -0.162 5.162 6 C -0.099 4.099 7 C -0.312 4.312 8 C -0.147 4.147 9 N -0.156 5.156 10 C 0.373 3.627 11 O -0.541 6.541 12 N -0.479 5.479 13 C 0.218 3.782 14 C -0.378 4.378 15 C 0.032 3.968 16 N -0.135 5.135 17 C 0.151 3.849 18 C -0.603 4.603 19 H 0.077 0.923 20 C -0.172 4.172 21 N -0.550 5.550 22 Si 0.787 3.213 23 H -0.203 1.203 24 H -0.203 1.203 25 H -0.195 1.195 26 N -0.189 5.189 27 H 0.300 0.700 28 H 0.066 0.934 29 H 0.101 0.899 30 H 0.092 0.908 31 H 0.111 0.889 32 H 0.077 0.923 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.210 0.790 36 H 0.187 0.813 37 H 0.226 0.774 38 H 0.190 0.810 39 H 0.238 0.762 40 H 0.062 0.938 41 H 0.089 0.911 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.535 17.729 -5.186 18.479 hybrid contribution 0.886 -0.609 0.510 1.190 sum 0.351 17.120 -4.676 17.751 Atomic orbital electron populations 1.21625 0.77565 1.03262 1.01651 1.46593 1.07679 1.03159 1.77492 1.21256 0.97586 0.84488 0.95519 1.22034 0.97754 0.80515 0.99046 1.48737 1.18091 1.09577 1.39793 1.23163 0.88732 0.99249 0.98756 1.21863 1.04866 0.94840 1.09602 1.24461 0.92215 1.00195 0.97842 1.77265 1.25309 0.92409 1.20642 1.16908 0.83799 0.84647 0.77299 1.90708 1.15763 1.88416 1.59182 1.68122 1.37566 0.94829 1.47371 1.18935 0.89600 0.84620 0.85007 1.22291 0.95682 0.96676 1.23140 1.23330 0.91141 0.91571 0.90736 1.47848 0.97795 1.03643 1.64256 1.19725 1.00216 0.67098 0.97854 1.21612 1.53068 0.92760 0.92868 0.92309 1.25582 0.93745 0.96612 1.01304 1.69956 1.48347 1.03896 1.32804 0.85474 0.78437 0.77803 0.79537 1.20278 1.20286 1.19547 1.44411 1.04352 0.99533 1.70565 0.69957 0.93445 0.89894 0.90771 0.88892 0.92277 0.88792 0.88791 0.79007 0.81252 0.77413 0.81045 0.76178 0.93808 0.91064 0.91725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.40 10.41 127.77 1.33 3.73 16 2 N -0.61 -18.51 2.87 -865.55 -2.49 -21.00 16 3 C 0.14 3.65 5.60 86.38 0.48 4.14 16 4 C 0.13 2.98 6.83 86.38 0.59 3.57 16 5 N -0.38 -8.91 3.68 -348.05 -1.28 -10.19 16 6 C 0.05 0.92 11.45 83.54 0.96 1.88 16 7 C -0.28 -4.95 10.80 21.99 0.24 -4.71 16 8 C 0.04 0.73 12.02 85.24 1.02 1.76 16 9 N -0.33 -8.23 12.42 -57.02 -0.71 -8.93 16 10 C 0.67 25.69 8.19 179.35 1.47 27.16 16 11 O -0.66 -27.88 12.84 -4.80 -0.06 -27.94 16 12 N -0.71 -27.14 9.23 -322.55 -2.98 -30.12 16 13 C 0.47 17.68 8.07 133.95 1.08 18.76 16 14 C -0.35 -12.45 9.52 22.25 0.21 -12.24 16 15 C 0.18 5.59 11.45 83.22 0.95 6.55 16 16 N -0.35 -12.32 3.63 -350.84 -1.28 -13.59 16 17 C 0.27 10.73 6.19 85.64 0.53 11.26 16 18 C -0.56 -26.05 9.39 25.60 0.24 -25.81 16 19 H 0.06 2.81 7.81 -2.91 -0.02 2.78 16 20 C 0.03 1.42 5.46 84.65 0.46 1.88 16 21 N -0.91 -45.26 13.29 21.45 0.28 -44.98 16 22 Si 0.96 38.58 29.54 68.60 2.03 40.60 16 23 H -0.28 -11.07 7.11 99.48 0.71 -10.36 16 24 H -0.28 -10.89 7.11 99.48 0.71 -10.19 16 25 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 26 N -0.47 -15.88 7.38 -54.79 -0.40 -16.28 16 27 H 0.45 13.58 8.96 -213.28 -1.91 11.67 16 28 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.08 1.46 8.07 -2.38 -0.02 1.44 16 30 H 0.07 1.89 7.31 -2.39 -0.02 1.88 16 31 H 0.09 2.28 8.07 -2.39 -0.02 2.26 16 32 H 0.06 1.90 7.42 -2.39 -0.02 1.88 16 33 H 0.09 2.27 8.07 -2.38 -0.02 2.25 16 34 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.19 2.72 8.06 -2.91 -0.02 2.70 16 36 H 0.17 2.01 8.06 -2.91 -0.02 1.98 16 37 H 0.21 2.44 8.06 -2.91 -0.02 2.42 16 38 H 0.17 6.66 5.77 -2.91 -0.02 6.64 16 39 H 0.22 5.21 8.06 -2.91 -0.02 5.18 16 40 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 42 H 0.27 12.94 8.31 -92.70 -0.77 12.16 16 Total: -1.00 -64.14 366.18 1.82 -62.31 By element: Atomic # 1 Polarization: 33.06 SS G_CDS: -0.87 Total: 32.20 kcal Atomic # 6 Polarization: 28.34 SS G_CDS: 9.57 Total: 37.91 kcal Atomic # 7 Polarization: -136.24 SS G_CDS: -8.84 Total: -145.09 kcal Atomic # 8 Polarization: -27.88 SS G_CDS: -0.06 Total: -27.94 kcal Atomic # 14 Polarization: 38.58 SS G_CDS: 2.03 Total: 40.60 kcal Total: -64.14 1.82 -62.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000438313599.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 209.208 kcal (2) G-P(sol) polarization free energy of solvation -64.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 146.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds